gi|399118181|ref|AB647160.1| Helicobacter phage KHP30 DNA, complete genome. [asmbl_id: NC_000000].26215, gc%: 35.77% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 138..404 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810541) 2e-43 MRQKNETAISFDRLSEITQAIQIKKNSAQKLENADKSETESQSTPKPKGTANAKNSALKPTKRAFSERQKTTVRDNLQASVKEIKRGC 212..223 attL N/A AAACAGCGCGCA 404..1528 PHAGE_Helico_KHP30_NC_019928: putative phage integrase; -; phage(gi431810542) 0.0 MHTHTIYLRDNTLYLNYTKNSKRHRVSLNRLTKRLNLSNDQALEYLEDLSLDQILKMLKQDFTPDKKQKRKSLLSPKKIKETTIEQATESFLRKKIGLKETSLSFMRSRFRTISKLLNVKKSYKVSKITKESIVNYHNNAFKKYQKNTLINFNALLKSFLEFCEQEGFIEKSPFFKITLKNAKYGLKDDPFSLDEIKTILHHAPNLRLKAFLITAFFTGLRTGEQLALLWSDIDFENKKINIDKSLNPSGAFTSPKNQTSIRQVDLLEPVERILKELKESEPNNKKMIFLSIPKRTQEFQKAFKALLKALNLKEKKLYTTRHTFASLMISMGEDPLWISKNMGHNDLNTTYSNYARYIPQPQKERAAFLKELII 1525..1767 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810543) 6e-41 MKENKNQDKNQNHKEKTMGIFQYLTYQTNKERDAELSFFDFIKKLEELQQTHTIRSSVCNVRNKRITSYSILLQKKGGLT 1764..2072 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810544) 2e-55 MKQEPLKAIDLEVLKALSKQAYLPKTADKISKDLNIDYYYTLKIFNKLEKKGLCDTWVVNRKKEKETKNNYYKICHLNDLGKDLCTYLKRLDSVKTNKKDQQ 2069..3037 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810545) 0.0 MNYILKQPMKFGYTQISNEICDDERVSDIAIAIYAYVKKHATTFKLTIEDIAKRFNRSTKTIYKYLNELKELGYIEFERERKNDGTFGKFFQFIMGNFSKNSSQNQAKKQEKTARNHMENKAMWIKPQIQASNADDTEAQSTSNYFPAFTLIKDQNKHENIRVSENFSTQEFEEKNQDSANQQDLKNPGKNSSFKSSKISNPSLFNRFSAFFSSILGNLDTKHLNQYERLAFEEFLNYRSEKHKLSYSTKKALLHQCEALKAQGCDLVACINQSIRRNYNEIYEVMHFEKPSYKSEAEQRNDEITDQFDYKPNPKYNGLCIW 3048..3404 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810546) 1e-61 MRSLIYKHANRNFKPKVWTNSVLLEGGILEILEALKAIENRSRSQVLERLIIFFIETQKGQTNEKAWERSKRAYKRTLTNQTKKNQLKRKQLERVAKAQKKKQLQANANHSFSFFKRS 3235..3501 PHAGE_Helico_KHP30_NC_019928: DNA helicase; -; phage(gi431810547) 2e-43 MKKHGNDRSELIKELLRTKQKKISLRESNLKELQRLKRKNNYKLTQIIRLAFLKGVNQFKKENLLVHLTLREFDSFLEVLEEKNQKKR 3512..4678 PHAGE_Helico_KHP30_NC_019928: putative DNA helicase, putative DNA repair protein; -; phage(gi431810548) 0.0 MENLIMKSFLDYPKQIDDFLEVISVESFTPFNQKIIKVLLEMKNKNQVVQLETIRLKIGDEAFESKEFSGILEADSYPNYLDLRSDFKTYLGLKMQEHLANELIKATRKSEIFDFDFLGKYIKLGSNRNGKYYWEWEEFFKSKPKTEKIHTGIDFLDNITDGGFEVGQLILFSGDPEAGKTLLGIQYITNAQQKHKVTYFGFEFSVRKHIETLNSKAFKLNKENYFIDDLSCEINELVSQIRGLSKEGHKLFIIDSQMKIQAPIVGRTIEEAETAKFTTLADLSKRLQVIIILIIQNSKSDKYSPTGSRKGAHEAHVMIRIEKIKKGELTYIKNYNERSKCRKILVLKNKQTGLQGVQFFRIDDYRLFEISANYRELKESDDYDLNDF 4697..6280 PHAGE_Helico_KHP30_NC_019928: putative primase; -; phage(gi431810549) 0.0 MITNFEGLKNIVSVVDVIENYLDLYKCGANLKACCPFHDERSASFFVSQEKNLFKCFGCGVSGDSFKFLQEFKKISFTEAVEEVAKIYNYHLEYESDAKTERNNHLKEILAFANNLFKERLKNDPKVLNYLTQKRAISLEMIEAYSLGYCLHEDLEVLKERFSEDDLIACGLFSNKNEKKELRSFCNYRITIPLKDSKGQIRSFSARLCISRLLESKNAPKYINGRETILYNKTFFLYNYHRAMESIKQKNQAIICEGFFDVLAYEHFNYKNVICTSGTAFTKEHLAFLNKLTVELCFSFDNDMAGIEATIRALELCLFNHTTNLSVIKIKDKDIKDMGDYLERNKRPNLVKINGFKFYCAYLLRSEFDNKTKDLNYKRILRAIKDLDPFTKGDFLKILKSFLPTKDPQIENAKKPVLSLLEARIYATMIESEEFRYIARRHLSPADVEFRDIFKKIVLNDFRGLDFLKKYKTIKENNGIYCLNELKIKGLKNSLKYAVENKDYKLIEALNNKIKEIQEGFISHELD 6267..7922 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810550) 0.0 MSWIDIGVGSGSSGSSSNLLRGFINSLGNALGNASIQWPSGFPRQINNVNDQIVGYYDDPTGYYQVVKRFLAQKNYYSNERLKNAFEHIIYQENRIREINQEITAKQNAINNLNSQKNNLNNQIDKQKEPYNALNQEIASLNNEIIAQKRAIKQEEEKLNALELQTNAKKQIIESLKKLEELKQELKRLKKQSKWEKQFTFLTDNPPNIQAQQEYALNRASDKNALMNFFLTEPYAIFPKGFIYEYHNAGKETYNALNAPNNMDGINNQFRTNALNQVLDNSYQKFLPGNASYNALGNIEQVKALKFYDLALNYNSPSENLEGALFFKQISQYAKGLKLKILIAKSNNQDLKEVKKLENTINQEEERLQAYDLNTIQQEIQKEQENALKLKESIKDIQNHTETLKNAINQKEHAKNTIEQQKQELERQINTIERQKQELERQINTIERQKPNLNNEINAIGNERINIKELGTKYNFLGIQPFLNNNGRGRTYARAFFSDKNKSIREYYEAETKIKNILGFYRIGESYERVLRRFLELNQYQQNELALLMLN 7994..12895 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810551) 0.0 MQNTEVDLKNLPSTPLYPLKNPILTPEQLEQKRKDLIIDLNQKSKELTELGLLDRLGGFVGYQTENAKEREKQLTDLKTQALDNKLEFKDLPNAIKDEYYNKAETSLLNPLKTKNEIAKEDYQKDLQRKAILNKTSKELTESDKELISDDSGFFNNALDAITGKSEVEKLKEYKEKEKAKDITKEIQKAYSAFSNIDKNKDFFSLFLSEDKQAQEKAKQDFETIAKNLYHFDSVIYNEKNEPFVVKGDKVYKINDGFIDNFTQSLLNNKFSIAGSVAGGLSGAKYGKNAGVLGLVGGAIAGAALGATAGAASDAIITNLALDRENKADEIIRHALSEGALSLATDTIMLGAGKVLKPLAKAPLKLAEMSMPFQFTKNFFTGNAKRASEIIETTLSKEQQQALKEFSAQFGGETKINANNANDFLSDKIKSVFKNDENKLKAYNKVKEILTLDNHKEQQQAFIRAIRSDETGNTLAFLIEAANLSPKANANLKSILNQTTENLTKSLKQFDLKDYEVKSVFDNLEQGTKESYDKALNEIIGKLYDNSYKVNLRDSVQDATNFEKFLNDLKAQGEIDPQAKSFLRQIEENVYNPNGVTYEQLKNSRQLINAYLRNVKDPSTLGYIQKASANFLKNDIDNAIESLLKQNKSAYEKISELQKSAISDYREMKQALELVDKAKIRDKNTHESDAVNSLINIIRAQGQKDLSNYRALTKGLQESDKQRLELTMLNRLMEESLKQDESLKVFDSTHFFNKLNEFKDEVFSTPKAKEYIDIASGFHRLFKNDAKIAESLKPVTTKNLSQGLATTLSGALKYQWTKFTLGTLYRNAPNRILGVKLPKALNEATAGAALKYHIKRALERSHSISDFSKQLELSAQNSKFTNNTLKIIEELNNGVKQASEELRAKAFNFSNEKLTNEQVKELLNNAKIPTSGRDAVVFGKNNLTPEIVEFMHKNNKKMIIEKASNKELELLQDANFRHPENIRASLDHDAITHILKKHGVNSVNVKNGEIPITYDDIANYRNIVDNADAIIRTIDKYDKEAIAAFKQVKGYAVVIEQAINKKNELVLKTMYKSNGDYKNNDVYKEFSSTSLNANAKMPHRLSSYSGATENAAKKPLTSQEELQENALRTQENTLKTTQAPLSPLEQANSEKLAKLESERLESEQEFLKAKEQEIKRKEALKRKLEYERGNAGNIESQTKIEVGEDIPAQTQAQIPKSRVRLNEREIYDLNYAIVKAKDLKPSFSTGGTQKRTDMNEEQIKSIAQNFDPKKIFGSGGFEDLPIILHDGQVIAGNHRVQGMLNFTPKSRFAYERAIKEYYHIDLKPDELLVRVPSKRLNNTEINNLAASSNQGRFNSESDHAIAVLSHYESKLKELESQLNADSVYSLKNIVAKNLNFDKATHPNVGDSNLALLMFNMPRTKTQGIELLNRWQKEFSNDIKSYEKVKKMFVDNAGSFHNLIHNMNFPKVSLNAYLSDIMDRSFANLKNYQSTSESLKDLSEKFYKTNSLDMFEKSDQSVSDISEILGGAIARFARFDDPSKALFEALKSENIKKGLKEFKIADVTKDMFDPNSKEFKDIDIYDFTHYLLMANREPNENNPTLKRLIEAVKDMQKENEKTIKGVSKKSYEKNIKEND 12949..13536 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810552) 5e-104 MIEVSEVIAKVRERLNDNEVGNYEILDSVLVENINQALLKICLEFRLKKAITRSLITEEERFLTLNNLLGIESVKLDKKEIESRNTIEKDTGELELLILSDRISVTPFKIGELEVVYYTYEEIRNILETIKLPKICLDVLVYSVLCNLLEIPNNETNFSVLANYKQLLKLAKDNLTNYLSLMYSKNIHFSKVVRV 13776..14336 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810553) 1e-102 MGIKEKEIELETLKREIAQAEASLEQDFIKHMVDKTNEKVEDLFFSDKPEFYKFVFTEQNNYLREKLTDKVSKAMDLSDEIQRDKDAEEIEKDKQAFLNKHPEVDFNELLEFYEEELPKRIKTQIDKLEGAAFFEAILDYFNAINAREEEPKKESKEEYSSLPKEALGNGVSGVGYANNENIMTRY 14347..15492 PHAGE_Helico_KHP30_NC_019928: structural protein; -; phage(gi431810554) 0.0 MLEKLNNINFNNISNNLNLGIEVGREIQNASWIKSPFFSITGTGADRGVRLFSVASQQPFRPRIKAQLSGSGVSGNTDFEANYDNLEILSQTIYPDAFGNSLRSKIKAYSELERIDFIKESVDSLTTWMNEERDKRIVASLTNDFTNYLYTQTMNVATIRKAIFHARNGLKGDNSKAFPIKPIRATMQSVGNVMVQNTSYIILLDSYQANQLKADSEFKELRKLYAFAGEDKGMLYSGLLGVIDNCPVIDAGVWNKFNVGMPNSSISDSDFMRYLNKANVSSIVTPRQFKEKLNQEKDEKKRSINKEISIGCLIGASAVLLAGSKETRFYIDETVDAGRKSLVGVDCLLGVSKARYQSTDGVVTPYDNQDYAVIGLVSDME 15506..15886 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810555) 1e-65 MKQKVHSVSYLAKAEFKFNNGVYNLVALPSGAEVVKVSLEVVGNPIATSTTSVSVGFEDETTKNYFLTLDNLAVDDASKKHTTSAKDYTATSNKVVVAEVKNANDNNVKGVLRVLYFLPSVIEVEY 15919..16356 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810556) 3e-81 MFFKNPLNDPNYFKPQDAINTQERFNGPKNFGLLNYSKTSYSDFLNDYKPTPTPKTSKFSNFVENVGGYGGLGMLGGAIGGLGSLIVGAINYSEQNKNAKESMRMAKEQFELEKQRYNAREQERLQNRQAIDNIAKANADIMTRF 16416..18224 PHAGE_Helico_KHP30_NC_019928: putative portal protein; -; phage(gi431810557) 0.0 MDFTTLQNDFTNDYQKALIANNEFLEAKKYYNGNQLPQDVLNIILERGQTPIIENMFKVIVNKILGYKIESISEIRLSPKQEEDRALSDLLNSLLQVFIQQENYDKSMIERDKNLLIGGLGVIQLWVSQDKDKNVEIEIKAIKPESFVIDYFSTDKNALDARRFHKMLEVSEQEALLLFGDSVIVNYSNVNHERIASVIESWYKEYNEETQSYEWNRYLWNRNTGIYKSEKKPFKNGACPFIVSKLYTDELNNYYGLFRDIKPMQDFINYAENRMGNMMGSFKAMFEEDAVVDVAEFVETMSLDNAIAKVRPNALKDHKIQFMNNQADLSALSQKAEQKRQLLRLLAGLNDESLGMAVNRQSGVAIAQRKESGLMGLQTFLKATDDMDRLIFRLAVSFICEYFTKEQVFKIVDKKLGDRYFKINSNDDNKIRPLKFDLILKSQLKTESRDEKWYNWNELLKILAPIRPDLVPSLVPLMLNDMDSPITNDVLEAIQNANALQQQNAEANAPYNQQIQALQIQKLQAEIMELQAKAHKYAEQGALSQTTNESEKINQAVAITEMQQQNANNANNEESNNKPKKKLKTSDKTTWRKYPSAQNLDY 18322..19878 PHAGE_Helico_KHP30_NC_019928: putative terminase; -; phage(gi431810558) 0.0 MNKQRALKELAVRELARRDFYQFVRLKWERYENKPFLDNWHIKYLCKVLECTQPNTCQSDELIRRLILNMPPSYGKTEIIARCFIAWSLGKDRTKKIFYISYSDELCRKIANQVRDLMSSFFYQTIFFDEPLEFLQNNAREFILREGGGLFVTTLKSALTGFHANQILIDDPIKVSGMNSKKEVSLVNYNFKESVISRLQDTRSNITILMQRLGSNDLCGFLQSELEFDKETIRRWKVIQLKALNENQEFYKIKDFEHTREKDTPLFEAKHNKEQLEALRLQMGNDEFSAQYQQDPVVSSGGYFDPQYFSKVFTHELGEMNTYIFVDNALSLSQNADNRAIVVVGVENYKESVRYIVLDCFFGIWSEEETIKHILMAKEKYKDAKTFIESDGGGLILYRLLLVALARHNEQNKQNNKELLSDEIICYTPSRKISKVDKIKAIRPFYNTGFLVFSYSSNNTGQIEKELFSFNPDKPFKKDDCIDALSSAITHESVKAPLKREIKETYNTRFHAKPTWRI 19934..20143 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810559) 2e-33 MKNINYIKNFKNIESIKKKRLACKKANGISLKRLKNKGYRDFIAKVKNKQQSDDEIVENLELSYLNAGI 20153..20338 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810560) 6e-28 MWSEKVVKIIPAILFLICLLGIFELGLIISSMNKTEKLEHQIQQSLKMLKTINKIKQCSSI 20323..20649 PHAGE_Helico_KHP30_NC_019928: putative holin; -; phage(gi431810561) 1e-55 MQQHLVILGYETSKLIPYLLVATIGLFVGFLYVLRTIRPKELKNKTEKAFYIIQGVGSSMLITWISYEIADYFFKLPISLCVAISGGVGYLGSDSVSVLVLDILKKRL 20657..21100 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810562) 6e-82 MTNLENALNNGNFKEQVYSSLEGVYQISKVLNQLDLLKNFSDHDLEINSFYQNKTANLRDGNKIVSTYRTTCIFETPSEQADYKIAVFARKHKDLWVNMNYTANTSGFETSFLNNANFRGLTTQSIPTTYTTTGYFTSIPKRSFMKL 21102..21323 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810563) 9e-37 MKLLFLACVFSVSFTACAKKVIYRDVKVPIKCDVELPTRPSEHLEALEYLRALLIYTETLENDLKFCTKQNTR 21378..21923 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810564) 9e-104 MYLVLLERKHDLRSLERKCKKESGMLGSFRVFESTHEEGISDKAIIKHYEEEKALFSCFSLENSGEPTDTPNLDRPIIARDYELEWSDTSCTVPKEYQNKKCNNLRHEVLQLVDPNNKDFKNRKILIHVGNSAHDTLGCVLLGMQHDEEMIYKSNEAVKKFFDLVKDKGVNNFLFKVIDKA 21767..21778 attR N/A AAACAGCGCGCA 21927..22724 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810565) 5e-143 MDTTRFIRNFILFKDALQKQNFNNKDLNTTSMQAALQSEQLALSEESQYLQSEQVRAKMQIDFLGMQANLQNAKAETLNKLIQCQAMLKSLKDNAMINRANALVSLLQVQANAANGITTSNFEAAFKIIAQIGSEYNQITLNNGNVSVQEKEQTNELKTILNSLSKELEKLNQQSEVNSIQIFSDKLEVLKDAPARLWGFSTLSNAKEGFYNEANEQIASGSVCLFRSDKVRKHTITFKAINTKTSLSKNITISVIANKLKERMS 22724..23296 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810566) 1e-104 MAYFESITAGRGGLDSFNQALNNQRYANLILNESMGNFANTVANAGSLFDNAKIREEALKYQRMRDLANDKKQAEAFDLQKRQAEQGMDFAKRQQIMSEESHKQNKVLNDLRAKAMKLENTLNQQQQKWLMKATPSTKASVLVDNNAIKTPTTPTKQNTLPTQSAPIAKPKPAIMEEVKSYINSNPFFRY 23335..23616 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810567) 1e-46 MPYAIIVILLIFNNNLKVKLALAEERLTNNEAHLIKQNETIEALELESQQYKANKLLETTKIKDKYHKVIVKDNTCEAKLQGYEALINAFKKI 23675..23806 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810568) 3e-17 MKLYNKIQEFINESELIKQKNNEVLGLARNELSELVNTKLKKI 23969..24784 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810569) 4e-152 MNEKTESEIFEEQNSLYKPIKQEKKTPSTPESEDKNDQSLANANQSLEAEPPYLSTGIGYLDDKIKNRSITAFDYYMAKKFLGLDLSVNLNGNLNIKSENKTRLASINKATQDIFDDLKALDLGDDLIKKAQEHSGITNQVKLWLNYKTGGLKGVDYDLAKTDNARLSYANRVAKTMAQGGQVTQKLRDEAKALTSWGFRSKEENTARATQTQEILLNSLRKNLQMLESLGGSVSPLMLEKLKEHQGKINYINDTGGKIDLKKYQSLAGGN 24784..25560 PHAGE_Helico_KHP30_NC_019928: hypothetical protein; -; phage(gi431810570) 1e-140 MEEKKENENKKVNRAYSNDFKLRVKRYYERSLESKQKIASKFGISNRTLALWVMDGEWENKAILKEIRAMYETHGLSLNALSKKYHVSVSLIRKFKIRDKWEKKKIVNEAAAVLEDKLTTDKMGLFLDTKKEEVKEVLKQSLESLDLDPVVVEAIAETSSDELILKAMNTAYIKKQILFCAIVARGELIKMIKKAGDKVKDNINIIVAAEKVSKLFIDAGVSLFGKEQIQAIEYKENSDYRQMNITELIALANADDNV