gi|341951772|ref|AFQP00000000.1| Haemophilus haemolyticus M21127 M21127_001, whole genome shotgun .1945624, gc%: 38.57%
REGION3
REGION_LENGTH25.4Kb
COMPLETENESS(score)intact(150)
SPECIFIC_KEYWORDterminase,portal,protease,tail
REGION_POSITION470877-496300
TRNA_NUM0
TOTAL_PROTEIN_NUM37
PHAGE_HIT_PROTEIN_NUM29
HYPOTHETICAL_PROTEIN_NUM5
PHAGE+HYPO_PROTEIN_PERCENTAGE91.8%
BACTERIAL_PROTEIN_NUM3
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM16
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Entero_c_1(7)
PHAGE_Gifsy_2(7)
PHAGE_Entero_mEp213(7)
PHAGE_Entero_cdtI(7)
PHAGE_Entero_mEp460(6)
PHAGE_Aggreg_S1249(6)
PHAGE_Entero_HK629(5)
PHAGE_Entero_HK630(5)
PHAGE_Entero_lambda(4)
PHAGE_Haemop_Aaphi23(4)
PHAGE_Salmon_Fels_1(3)
PHAGE_Pseudo_PAJU2(3)
PHAGE_Entero_YYZ_2008(3)
PHAGE_Entero_mEpX1(2)
PHAGE_Haemop_HP2(2)
PHAGE_Entero_EF62phi(2)
PHAGE_Cronob_phiES15(2)
PHAGE_Stx2_converting_1717(2)
PHAGE_Haemop_HP1(2)
PHAGE_Pseudo_F10(2)
PHAGE_Bacter_APSE_2(1)
PHAGE_Deftia_phiW_14(1)
PHAGE_Stx2_converting_I(1)
PHAGE_Erwini_phiEt88(1)
PHAGE_Entero_Min27(1)
PHAGE_Entero_mEp235(1)
PHAGE_Synech_S_SKS1(1)
PHAGE_Acyrth_pisum_secondary_endosymbiont_1(1)
PHAGE_Escher_TL_2011b(1)
PHAGE_Entero_BP_4795(1)
PHAGE_Gifsy_1(1)
PHAGE_Aeromo_65(1)
PHAGE_Sulfit_pCB2047_A(1)
PHAGE_Synech_S_CBS3(1)
PHAGE_Clostr_phiCD6356(1)
PHAGE_Lactob_LF1(1)
PHAGE_Aeromo_phiO18P(1)
PHAGE_Entero_mEp237(1)
PHAGE_Salmon_SPN3UB(1)
PHAGE_Clostr_phiMMP04(1)
PHAGE_Clostr_c_st(1)
PHAGE_Entero_HK225(1)
PHAGE_Aeromo_Aeh1(1)
PHAGE_Sulfit_pCB2047_C(1)
PHAGE_Clostr_phi_CD119(1)
PHAGE_Entero_N15(1)
PHAGE_Vibrio_vB_VpaM_MAR(1)
PHAGE_Stx2_converting_86(1)
PHAGE_Salmon_SPN9CC(1)
PHAGE_Entero_phiV10(1)
PHAGE_Salmon_SP_031(1)
PHAGE_Escher_TL_2011c(1)
PHAGE_Yersin_phiR1_37(1)
PHAGE_Clostr_phiCD38_2(1)
PHAGE_Salmon_SS3e(1)
PHAGE_Cellul_phi14:2(1)
PHAGE_Aeromo_phiAS5(1)
PHAGE_Escher_P13374(1)
PHAGE_Aeromo_CC2(1)
FIRST_MOST_COMMON_PHAGE_NUM7
FIRST_MOST_COMMON_PHAGE_PERCENTAGE18.91%
GC_PERCENTAGE40.15%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region