gi|341951772|ref|AFQP00000000.1| Haemophilus haemolyticus M21127 M21127_001, whole genome shotgun .1945624, gc%: 38.57%
REGION2
REGION_LENGTH12Kb
COMPLETENESS(score)questionable(80)
SPECIFIC_KEYWORDterminase,head,capsid
REGION_POSITION441470-453562
TRNA_NUM0
TOTAL_PROTEIN_NUM18
PHAGE_HIT_PROTEIN_NUM10
HYPOTHETICAL_PROTEIN_NUM5
PHAGE+HYPO_PROTEIN_PERCENTAGE83.3%
BACTERIAL_PROTEIN_NUM3
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM6
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Salmon_ST64B(4)
PHAGE_Entero_mEp235(3)
PHAGE_Megavi_chiliensis(2)
PHAGE_Klebsi_phiKO2(2)
PHAGE_Bacill_phi105(2)
PHAGE_Entero_SfV(2)
PHAGE_Shigel_SfII(2)
PHAGE_Clostr_phi3626(2)
PHAGE_Geobac_virus_E2(2)
PHAGE_Entero_phiP27(2)
PHAGE_Entero_EFRM31(1)
PHAGE_Pseudo_PAJU2(1)
PHAGE_Pseudo_vB_PaeS_PMG1(1)
PHAGE_Azospi_Cd(1)
PHAGE_Burkho_phi644_2(1)
PHAGE_Xantho_phiL7(1)
PHAGE_Entero_HK022(1)
PHAGE_Rhizob_16_3(1)
PHAGE_Nocard_NBR1(1)
PHAGE_Pseudo_D3(1)
PHAGE_Entero_EFAP_1(1)
PHAGE_Yersin_PY54(1)
PHAGE_Burkho_Bcep176(1)
PHAGE_Lactoc_bIL309(1)
PHAGE_Entero_HK140(1)
PHAGE_Burkho_phiE125(1)
PHAGE_Burkho_phi1026b(1)
PHAGE_Entero_mEpX2(1)
PHAGE_Burkho_KS9(1)
PHAGE_Acanth_mimivirus(1)
PHAGE_Megavi_lba(1)
FIRST_MOST_COMMON_PHAGE_NUM4
FIRST_MOST_COMMON_PHAGE_PERCENTAGE22.22%
GC_PERCENTAGE39.33%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region