gi|341951772|ref|AFQP00000000.1| Haemophilus haemolyticus M21127 M21127_001, whole genome shotgun .1945624, gc%: 38.57%
REGION1
REGION_LENGTH50.1Kb
COMPLETENESS(score)intact(150)
SPECIFIC_KEYWORDintegrase,tail,plate,lysin,head,terminase,capsid
REGION_POSITION401144-451253
TRNA_NUM0
TOTAL_PROTEIN_NUM52
PHAGE_HIT_PROTEIN_NUM38
HYPOTHETICAL_PROTEIN_NUM12
PHAGE+HYPO_PROTEIN_PERCENTAGE96.1%
BACTERIAL_PROTEIN_NUM2
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM10
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Mannhe_vB_MhM_1152AP(25)
PHAGE_Mannhe_phiMHaA1(24)
PHAGE_Haemop_HP1(9)
PHAGE_Ralsto_phiRSA1(7)
PHAGE_Burkho_KS5(7)
PHAGE_Entero_Fels_2(7)
PHAGE_Erwini_ENT90(6)
PHAGE_Salmon_RE_2010(6)
PHAGE_Burkho_KL3(5)
PHAGE_Entero_P2(5)
PHAGE_Burkho_phiE202(5)
PHAGE_Yersin_L_413C(4)
PHAGE_Haemop_HP2(4)
PHAGE_Entero_PsP3(4)
PHAGE_Salmon_SP_004(3)
PHAGE_Pasteu_F108(3)
PHAGE_Burkho_phi52237(3)
PHAGE_Burkho_KS14(3)
PHAGE_Burkho_phiE12_2(3)
PHAGE_Pseudo_phiCTX(2)
PHAGE_Haemop_SuMu(2)
PHAGE_Entero_P4(1)
PHAGE_Pseudo_14_1(1)
PHAGE_Haemop_Aaphi23(1)
PHAGE_Strept_ALQ13_2(1)
PHAGE_Cronob_phiES15(1)
PHAGE_Strept_TG1(1)
PHAGE_Pseudo_JG024(1)
PHAGE_Strept_phiNJ2(1)
PHAGE_Strept_YMC_2011(1)
PHAGE_Pseudo_PAJU2(1)
PHAGE_Vibrio_vB_VpaM_MAR(1)
PHAGE_Strept_phiC31(1)
PHAGE_Stenot_S1(1)
PHAGE_Strept_PH15(1)
PHAGE_Burkho_DC1(1)
PHAGE_Burkho_BcepMigl(1)
PHAGE_Aggreg_S1249(1)
FIRST_MOST_COMMON_PHAGE_NUM24
FIRST_MOST_COMMON_PHAGE_PERCENTAGE48.07%
GC_PERCENTAGE40.42%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region