gi|386221400|ref|AFAB02000225.1| Escherichia coli 2.3916 Contig1887244547, whole genome shotgun .104654, gc%: 50.41%
REGION1
REGION_LENGTH47.5Kb
COMPLETENESS(score)intact(150)
SPECIFIC_KEYWORDtransposase,lysin,terminase,portal,virion,head,tail,plate
REGION_POSITION235-47737
TRNA_NUM0
TOTAL_PROTEIN_NUM67
PHAGE_HIT_PROTEIN_NUM45
HYPOTHETICAL_PROTEIN_NUM20
PHAGE+HYPO_PROTEIN_PERCENTAGE97%
BACTERIAL_PROTEIN_NUM2
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM22
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Haemop_SuMu_NC_019455(15)
PHAGE_Entero_Mu_NC_000929(8)
PHAGE_Entero_phiP27_NC_003356(8)
PHAGE_Escher_D108_NC_013594(7)
PHAGE_Pseudo_PA1/KOR/2010_NC_023700(6)
PHAGE_Pseudo_vB_PaeS_PAO1_Ab30_NC_026601(5)
PHAGE_Pseudo_JBD30_NC_020198(5)
PHAGE_Pseudo_JD024_NC_024330(5)
PHAGE_Escher_ep3_NC_025430(4)
PHAGE_Entero_SfV_NC_003444(4)
PHAGE_Vibrio_12B12_NC_021070(4)
PHAGE_Pseudo_PPpW_3_NC_023006(4)
PHAGE_Pseudo_JBD24_NC_020203(4)
PHAGE_Shigel_SfIV_NC_022749(4)
PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(4)
PHAGE_Pseudo_D3112_NC_005178(4)
PHAGE_Burkho_KS10_NC_011216(3)
PHAGE_Pseudo_MP22_NC_009818(3)
PHAGE_Vibrio_VHML_NC_004456(3)
PHAGE_Pseudo_MP38_NC_011611(3)
PHAGE_Pseudo_MP48_NC_024782(3)
PHAGE_Shigel_SfII_NC_021857(3)
PHAGE_Pseudo_MP29_NC_011613(3)
PHAGE_Pseudo_JBD5_NC_020202(3)
PHAGE_Burkho_BcepMu_NC_005882(3)
PHAGE_Pseudo_B3_NC_006548(3)
PHAGE_Burkho_phiE255_NC_009237(3)
PHAGE_Salmon_ST64B_NC_004313(2)
PHAGE_Entero_HK629_NC_019711(2)
PHAGE_Entero_PsP3_NC_005340(2)
PHAGE_Ralsto_RSY1_NC_025115(2)
PHAGE_Pseudo_JBD88a_NC_020200(2)
PHAGE_Entero_P88_NC_026014(2)
PHAGE_Escher_HK639_NC_016158(2)
PHAGE_Salmon_SP_004_NC_021774(2)
PHAGE_Entero_lambda_NC_001416(2)
PHAGE_Entero_mEp390_NC_019721(2)
PHAGE_Pseudo_DMS3_NC_008717(2)
PHAGE_Pseudo_MP42_NC_018274(2)
PHAGE_Entero_Fels_2_NC_010463(2)
PHAGE_Escher_Av_05_NC_025830(1)
PHAGE_Entero_mEp235_NC_019708(1)
PHAGE_Anomal_entomopoxvirus_NC_023426(1)
PHAGE_Erwini_vB_EamP_S6_NC_019514(1)
PHAGE_Escher_TL_2011b_NC_019445(1)
PHAGE_Stenot_Smp131_NC_023588(1)
PHAGE_Pseudo_SPM_1_NC_023596(1)
PHAGE_Shigel_POCJ13_NC_025434(1)
PHAGE_Entero_vB_EcoM_VR7_NC_014792(1)
PHAGE_Erwini_ENT90_NC_019932(1)
PHAGE_Rhizob_vB_RleM_PPF1_NC_025427(1)
PHAGE_Stx2_converting_II_NC_004914(1)
PHAGE_Entero_YYZ_2008_NC_011356(1)
PHAGE_Mannhe_vB_MhM_1152AP_NC_021778(1)
PHAGE_Cronob_ENT39118_NC_019934(1)
PHAGE_Aeromo_PX29_NC_023688(1)
PHAGE_Entero_VT2_Sakai_NC_000902(1)
PHAGE_Salmon_SPN1S_NC_016761(1)
PHAGE_Stx1_converting_NC_004913(1)
PHAGE_Entero_ST64T_NC_004348(1)
PHAGE_Ralsto_phiRSA1_NC_009382(1)
PHAGE_Entero_T4_NC_000866(1)
PHAGE_Rhodob_RcapMu_NC_016165(1)
PHAGE_Halomo_phiHAP_1_NC_010342(1)
PHAGE_Entero_HK022_NC_002166(1)
PHAGE_Vibrio_VP882_NC_009016(1)
PHAGE_Entero_BP_4795_NC_004813(1)
PHAGE_Salmon_Fels_1_NC_010391(1)
PHAGE_Acinet_Bphi_B1251_NC_019541(1)
PHAGE_Entero_HK140_NC_019710(1)
PHAGE_Bacill_G_NC_023719(1)
PHAGE_Stx2_converting_1717_NC_011357(1)
PHAGE_Pseudo_JG024_NC_017674(1)
PHAGE_Entero_P1_NC_005856(1)
PHAGE_Rhizob_RR1_A_NC_021560(1)
PHAGE_Salmon_RE_2010_NC_019488(1)
PHAGE_Pseudo_NH_4_NC_019451(1)
PHAGE_Plankt_PaV_LD_NC_016564(1)
PHAGE_Pithov_sibericum_NC_023423(1)
PHAGE_Entero_HK630_NC_019723(1)
PHAGE_Entero_mEpX2_NC_019705(1)
PHAGE_Entero_P2_NC_001895(1)
FIRST_MOST_COMMON_PHAGE_NUM15
FIRST_MOST_COMMON_PHAGE_PERCENTAGE22.38%
GC_PERCENTAGE53.48%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region