gi|21914413|ref|AF527608.1| Bacteriophage P22-pbi, complete sequence. .41724, gc%: 47.09%
REGION1
REGION_LENGTH41.2Kb
COMPLETENESS(score)intact(145)
SPECIFIC_KEYWORDterminase,portal,coat,head,virion,injection,tail
REGION_POSITION203-41437
TRNA_NUM0
TOTAL_PROTEIN_NUM71
PHAGE_HIT_PROTEIN_NUM71
HYPOTHETICAL_PROTEIN_NUM0
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM2
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Entero_P22_NC_002371(70)
PHAGE_Salmon_ST160_NC_014900(28)
PHAGE_Salmon_SE1_NC_011802(26)
PHAGE_Entero_ST104_NC_005841(24)
PHAGE_Entero_ST64T_NC_004348(21)
PHAGE_Salmon_epsilon34_NC_011976(19)
PHAGE_Salmon_vB_SemP_Emek_NC_018275(18)
PHAGE_Salmon_SPN9CC_NC_017985(17)
PHAGE_Entero_ES18_NC_006949(10)
PHAGE_Salmon_vB_SosS_Oslo_NC_018279(9)
PHAGE_Salmon_c341_NC_013059(9)
PHAGE_Entero_HK446_NC_019714(5)
PHAGE_Entero_Sf6_NC_005344(4)
PHAGE_Entero_HK106_NC_019768(4)
PHAGE_Entero_HK544_NC_019767(4)
PHAGE_Entero_mEp234_NC_019715(4)
PHAGE_Entero_HK620_NC_002730(4)
PHAGE_Entero_mEp235_NC_019708(3)
PHAGE_Entero_HK629_NC_019711(3)
PHAGE_Entero_HK542_NC_019769(3)
PHAGE_Escher_HK75_NC_016160(2)
PHAGE_Entero_HK97_NC_002167(2)
PHAGE_Entero_epsilon15_NC_004775(2)
PHAGE_Bacter_APSE_2_NC_011551(1)
PHAGE_Escher_HK639_NC_016158(1)
PHAGE_Acinet_Acj61_NC_014661(1)
PHAGE_Stx2_converting_I_NC_003525(1)
PHAGE_Klebsi_phiKO2_NC_005857(1)
PHAGE_Acyrth_pisum_secondary_endosymbiont_1_NC_000935(1)
PHAGE_Entero_mEp390_NC_019721(1)
PHAGE_Entero_HK140_NC_019710(1)
PHAGE_Entero_IME10_NC_019501(1)
PHAGE_Stx2_converting_1717_NC_011357(1)
PHAGE_Acinet_AP22_NC_017984(1)
PHAGE_Entero_HK225_NC_019717(1)
PHAGE_Pseudo_PAJU2_NC_011373(1)
PHAGE_Entero_c_1_NC_019706(1)
PHAGE_Pseudo_F10_NC_007805(1)
PHAGE_Stx2_converting_86_NC_008464(1)
PHAGE_Vibrio_VHML_NC_004456(1)
PHAGE_Stx2_converting_II_NC_004914(1)
PHAGE_Entero_YYZ_2008_NC_011356(1)
PHAGE_Entero_N4_NC_008720(1)
PHAGE_Yersin_PY54_NC_005069(1)
PHAGE_Entero_mEp460_NC_019716(1)
PHAGE_Entero_mEpX2_NC_019705(1)
PHAGE_Entero_HK630_NC_019723(1)
PHAGE_Salmon_SPN1S_NC_016761(1)
PHAGE_Escher_P13374_NC_018846(1)
PHAGE_Stx1_converting_NC_004913(1)
FIRST_MOST_COMMON_PHAGE_NUM70
FIRST_MOST_COMMON_PHAGE_PERCENTAGE98.59%
GC_PERCENTAGE47.05%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region