gi|325688684|ref|AEXV00000000.1| Streptococcus sanguinis SK72 , whole genome shotgun .2364553, gc%: 43.31%
REGION3
REGION_LENGTH20.8Kb
COMPLETENESS(score)incomplete(20)
SPECIFIC_KEYWORDrecombinase
REGION_POSITION1309166-1330026
TRNA_NUM0
TOTAL_PROTEIN_NUM24
PHAGE_HIT_PROTEIN_NUM13
HYPOTHETICAL_PROTEIN_NUM10
PHAGE+HYPO_PROTEIN_PERCENTAGE95.8%
BACTERIAL_PROTEIN_NUM1
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM10
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Staphy_StauST398_2(4)
PHAGE_Staphy_2638A(4)
PHAGE_Staphy_phiSauS_IPLA35(3)
PHAGE_Entero_phiFL4A(3)
PHAGE_Strept_pyogenes_315_6(3)
PHAGE_Staphy_tp310_2(3)
PHAGE_Staphy_42E(2)
PHAGE_Staphy_SMSAP5(2)
PHAGE_Staphy_phi2958PVL(2)
PHAGE_Staphy_phi7401PVL(2)
PHAGE_Cronob_ENT39118(2)
PHAGE_Strept_P9(2)
PHAGE_Bacter_APSE_2(1)
PHAGE_Bacill_Fah(1)
PHAGE_Staphy_prophage_phiPV83(1)
PHAGE_Burkho_BcepC6B(1)
PHAGE_Yersin_phiR1_RT(1)
PHAGE_Cellul_phiST(1)
PHAGE_Acyrth_pisum_secondary_endosymbiont_1(1)
PHAGE_Entero_mEp390(1)
PHAGE_Bacill_phBC6A51(1)
PHAGE_Cronob_vB_CskP_GAP227(1)
PHAGE_Entero_mEp234(1)
PHAGE_Staphy_47(1)
PHAGE_Salmon_vB_SosS_Oslo(1)
PHAGE_Staphy_phi5967PVL(1)
PHAGE_Strept_pyogenes_315_2(1)
PHAGE_Bacill_SPBc2(1)
PHAGE_Escher_HK75(1)
PHAGE_Clostr_c_st(1)
PHAGE_Strept_phiNJ2(1)
PHAGE_Vibrio_pYD21_A(1)
PHAGE_Bacill_Gamma(1)
PHAGE_Strept_PH15(1)
PHAGE_Bacill_phi105(1)
PHAGE_Bacill_Cherry(1)
PHAGE_Staphy_3A(1)
FIRST_MOST_COMMON_PHAGE_NUM4
FIRST_MOST_COMMON_PHAGE_PERCENTAGE16.66%
GC_PERCENTAGE39.14%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region