gi|325688684|ref|AEXV00000000.1| Streptococcus sanguinis SK72 , whole genome shotgun .2364553, gc%: 43.31%
REGION1
REGION_LENGTH25.6Kb
COMPLETENESS(score)incomplete(30)
SPECIFIC_KEYWORDprotease,recombinase
REGION_POSITION998977-1024582
TRNA_NUM0
TOTAL_PROTEIN_NUM24
PHAGE_HIT_PROTEIN_NUM11
HYPOTHETICAL_PROTEIN_NUM3
PHAGE+HYPO_PROTEIN_PERCENTAGE58.3%
BACTERIAL_PROTEIN_NUM10
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM10
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Lactoc_949(2)
PHAGE_Bacill_MG_B1(1)
PHAGE_Pseudo_73(1)
PHAGE_Cronob_vB_CsaM_GAP32(1)
PHAGE_Mycoba_ScottMcG(1)
PHAGE_Staphy_52A(1)
PHAGE_Clostr_phiC2(1)
PHAGE_Entero_vB_KleM_RaK2(1)
PHAGE_Staphy_phiSauS_IPLA35(1)
PHAGE_Megavi_chiliensis(1)
PHAGE_Staphy_SMSAP5(1)
PHAGE_Yersin_phiR1_RT(1)
PHAGE_Aeromo_31(1)
PHAGE_Pandor_dulcis(1)
PHAGE_Lactob_Lb338_1(1)
PHAGE_Klebsi_KP27(1)
PHAGE_Helico_2(1)
PHAGE_Synech_S_SM2(1)
PHAGE_Clostr_phiMMP02(1)
PHAGE_Aeromo_44RR2_8t(1)
PHAGE_Staphy_77(1)
PHAGE_Staphy_tp310_2(1)
PHAGE_Entero_RB69(1)
PHAGE_Megavi_lba(1)
FIRST_MOST_COMMON_PHAGE_NUM2
FIRST_MOST_COMMON_PHAGE_PERCENTAGE8.33%
GC_PERCENTAGE43.08%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region