gi|296500658|ref|ADUE01000179.1| Escherichia coli MS 185-1 E_coli185-1-1.0_Cont443.5, whole genome .40398, gc%: 50.06%
REGION1
REGION_LENGTH27.9Kb
COMPLETENESS(score)intact(108)
SPECIFIC_KEYWORDtail,lysis
REGION_POSITION3973-31945
TRNA_NUM0
TOTAL_PROTEIN_NUM38
PHAGE_HIT_PROTEIN_NUM35
HYPOTHETICAL_PROTEIN_NUM1
PHAGE+HYPO_PROTEIN_PERCENTAGE94.7%
BACTERIAL_PROTEIN_NUM2
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM6
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Yersin_L_413C_NC_004745(29)
PHAGE_Entero_P2_NC_001895(29)
PHAGE_Salmon_SP_004_NC_021774(28)
PHAGE_Entero_fiAA91_ss_NC_022750(26)
PHAGE_Entero_PsP3_NC_005340(19)
PHAGE_Ectoca_siliculosus_virus_1_NC_002687(2)
PHAGE_Erwini_ENT90_NC_019932(2)
PHAGE_Entero_Mu_NC_000929(2)
PHAGE_Feldma_species_virus_NC_011183(2)
PHAGE_Strept_Sfi11_NC_002214(1)
PHAGE_Prochl_P_HM2_NC_015284(1)
PHAGE_Prochl_MED4_213_NC_020845(1)
PHAGE_Escher_D108_NC_013594(1)
PHAGE_Strept_20617_NC_023503(1)
PHAGE_Entero_P1_NC_005856(1)
PHAGE_Synech_syn9_NC_008296(1)
PHAGE_Erwini_phiEt88_NC_015295(1)
PHAGE_Prochl_P_HM1_NC_015280(1)
PHAGE_Synech_S_MbCM7_NC_023587(1)
PHAGE_Entero_Fels_2_NC_010463(1)
PHAGE_Strept_O1205_NC_004303(1)
PHAGE_Strept_TP_J34_NC_020197(1)
FIRST_MOST_COMMON_PHAGE_NUM29
FIRST_MOST_COMMON_PHAGE_PERCENTAGE76.31%
GC_PERCENTAGE51.45%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region