gi|227863502|ref|ACKR00000000.1| Lactobacillus crispatus JV-V01 , whole genome shotgun .2066562, gc%: 36.89%
REGION3
REGION_LENGTH50.9Kb
COMPLETENESS(score)intact(100)
SPECIFIC_KEYWORDlysin,tail,capsid,protease,integrase
REGION_POSITION1529544-1580542
TRNA_NUM1
TOTAL_PROTEIN_NUM61
PHAGE_HIT_PROTEIN_NUM34
HYPOTHETICAL_PROTEIN_NUM26
PHAGE+HYPO_PROTEIN_PERCENTAGE98.3%
BACTERIAL_PROTEIN_NUM1
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM12
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Lactob_phiadh(19)
PHAGE_Lactoc_bIL286(7)
PHAGE_Lactob_Lv_1(7)
PHAGE_Lactoc_BK5_T(6)
PHAGE_Lactob_Sha1(6)
PHAGE_Lactoc_P335_sensu_lato(5)
PHAGE_Strept_Sfi21(5)
PHAGE_Lactob_prophage_Lj965(3)
PHAGE_Lactob_prophage_Lj928(3)
PHAGE_Strept_YMC_2011(3)
PHAGE_Strept_DT1(3)
PHAGE_Strept_Abc2(3)
PHAGE_Lactob_LL_H(3)
PHAGE_Lactob_johnsonii_prophage_Lj771(3)
PHAGE_Staphy_PVL(2)
PHAGE_Lactob_JCL1032(2)
PHAGE_Bacill_phBC6A51(2)
PHAGE_Lactob_AQ113(2)
PHAGE_Strept_SMP(2)
PHAGE_Strept_7201(2)
PHAGE_Strept_M102(2)
PHAGE_Staphy_P954(2)
PHAGE_Clostr_phiC2(1)
PHAGE_Staphy_JS01(1)
PHAGE_Staphy_71(1)
PHAGE_Temper_phiNIH1_1(1)
PHAGE_Strept_pyogenes_315_2(1)
PHAGE_Bacill_SPBc2(1)
PHAGE_Lactob_LF1(1)
PHAGE_Staphy_77(1)
PHAGE_Strept_pyogenes_315_3(1)
PHAGE_Staphy_phiN315(1)
PHAGE_Strept_Sfi19(1)
PHAGE_Deep_s_D6E(1)
PHAGE_Lactob_c5(1)
PHAGE_Staphy_phi13(1)
PHAGE_Strept_pyogenes_315_4(1)
PHAGE_Staphy_2638A(1)
PHAGE_Lactob_KC5a(1)
PHAGE_Staphy_vB_SepiS_phiIPLA5(1)
PHAGE_Lactoc_bIL309(1)
PHAGE_Lactoc_r1t(1)
PHAGE_Staphy_GH15(1)
PHAGE_Lactob_phiAT3(1)
PHAGE_Staphy_tp310_2(1)
PHAGE_Bacill_phBC6A52(1)
PHAGE_Lactoc_TP901_1(1)
PHAGE_Staphy_JD007(1)
PHAGE_Staphy_3A(1)
PHAGE_Staphy_phiSauS_IPLA88(1)
FIRST_MOST_COMMON_PHAGE_NUM19
FIRST_MOST_COMMON_PHAGE_PERCENTAGE31.14%
GC_PERCENTAGE34.62%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region