gi|227863502|ref|ACKR00000000.1| Lactobacillus crispatus JV-V01 , whole genome shotgun .2066562, gc%: 36.89%
REGION2
REGION_LENGTH31.6Kb
COMPLETENESS(score)incomplete(60)
SPECIFIC_KEYWORDtail,lysin
REGION_POSITION498693-530344
TRNA_NUM0
TOTAL_PROTEIN_NUM40
PHAGE_HIT_PROTEIN_NUM27
HYPOTHETICAL_PROTEIN_NUM12
PHAGE+HYPO_PROTEIN_PERCENTAGE97.5%
BACTERIAL_PROTEIN_NUM1
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Lister_B054(16)
PHAGE_Deep_s_D6E(7)
PHAGE_Lactob_AQ113(6)
PHAGE_Lactob_Lv_1(3)
PHAGE_Xantho_vB_XveM_DIBBI(3)
PHAGE_Lactob_KC5a(3)
PHAGE_Aggreg_S1249(3)
PHAGE_Lactob_johnsonii_prophage_Lj771(3)
PHAGE_Synech_S_CBS4(2)
PHAGE_Lactob_phiadh(2)
PHAGE_Haemop_Aaphi23(2)
PHAGE_Lactob_LF1(2)
PHAGE_Edward_PEi2(2)
PHAGE_Lactob_prophage_Lj965(1)
PHAGE_Psychr_pOW20_A(1)
PHAGE_Klebsi_JD001(1)
PHAGE_Lactob_phig1e(1)
PHAGE_Paenib_phiIBB_Pl23(1)
PHAGE_Lactob_JCL1032(1)
PHAGE_Erwini_phiEt88(1)
PHAGE_Aeromo_vB_AsaM_56(1)
PHAGE_Brocho_NF5(1)
PHAGE_Pseudo_vB_PaeM_C2_10_Ab1(1)
PHAGE_Lister_A500(1)
PHAGE_Iodoba_phiPLPE(1)
PHAGE_Pseudo_PAK_P1(1)
PHAGE_Phage_OH2(1)
PHAGE_Bacill_B103(1)
PHAGE_Entero_EF62phi(1)
PHAGE_Lactob_prophage_Lj928(1)
PHAGE_Halovi_HRTV_8(1)
PHAGE_Pectob_ZF40(1)
PHAGE_Lactoc_bIL286(1)
PHAGE_Acinet_AP22(1)
PHAGE_Clostr_phi_CD119(1)
PHAGE_Cyanop_PSS2(1)
PHAGE_Erwini_vB_EamM_Y2(1)
PHAGE_Edward_MSW_3(1)
PHAGE_Lactob_Lc_Nu(1)
PHAGE_Lactob_LL_H(1)
PHAGE_Bacill_phi105(1)
PHAGE_Synech_S_CBS2(1)
PHAGE_Lactoc_bIL310(1)
PHAGE_Pseudo_JG004(1)
PHAGE_Entero_vB_EcoS_ACG_M12(1)
PHAGE_Pseudo_PaP1(1)
FIRST_MOST_COMMON_PHAGE_NUM17
FIRST_MOST_COMMON_PHAGE_PERCENTAGE40%
GC_PERCENTAGE42.97%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region