gi|227863502|ref|ACKR00000000.1| Lactobacillus crispatus JV-V01 , whole genome shotgun .2066562, gc%: 36.89%
REGION1
REGION_LENGTH26.8Kb
COMPLETENESS(score)incomplete(20)
SPECIFIC_KEYWORDintegrase
REGION_POSITION476329-503214
TRNA_NUM0
TOTAL_PROTEIN_NUM21
PHAGE_HIT_PROTEIN_NUM12
HYPOTHETICAL_PROTEIN_NUM8
PHAGE+HYPO_PROTEIN_PERCENTAGE95.2%
BACTERIAL_PROTEIN_NUM1
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Lactob_prophage_Lj965(5)
PHAGE_Lactob_johnsonii_prophage_Lj771(5)
PHAGE_Lactob_phiadh(3)
PHAGE_Lactob_prophage_Lj928(2)
PHAGE_Staphy_EW(2)
PHAGE_Riemer_RAP44(1)
PHAGE_Lactob_JCL1032(1)
PHAGE_Strept_pyogenes_315_5(1)
PHAGE_Staphy_85(1)
PHAGE_Strept_MM1(1)
PHAGE_Strept_SM1(1)
PHAGE_Lister_A500(1)
PHAGE_Bacill_IEBH(1)
PHAGE_Brocho_BL3(1)
PHAGE_Parame_bursaria_Chlorella_virus_AR158(1)
PHAGE_Temper_phiNIH1_1(1)
PHAGE_Lactob_LF1(1)
PHAGE_Staphy_77(1)
PHAGE_Entero_phiFL3A(1)
PHAGE_Strept_YMC_2011(1)
PHAGE_Deep_s_D6E(1)
PHAGE_Lactob_c5(1)
PHAGE_Strept_pyogenes_315_4(1)
PHAGE_Entero_phiFL2A(1)
PHAGE_Lactob_KC5a(1)
PHAGE_Entero_phiEf11(1)
PHAGE_Staphy_vB_SepiS_phiIPLA5(1)
PHAGE_Staphy_StauST398_3(1)
PHAGE_Strept_O1205(1)
PHAGE_Strept_TP_J34(1)
PHAGE_Entero_phiFL1A(1)
PHAGE_Strept_M102(1)
PHAGE_Strept_pyogenes_315_6(1)
FIRST_MOST_COMMON_PHAGE_NUM5
FIRST_MOST_COMMON_PHAGE_PERCENTAGE23.8%
GC_PERCENTAGE38.59%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region