gi|229350621|ref|ACHY00000000.1| Vibrio cholerae TMA 21 , whole genome shotgun .4023772, gc%: 47.59%
REGION2
REGION_LENGTH40.2Kb
COMPLETENESS(score)intact(150)
SPECIFIC_KEYWORDtransposase,portal,virion,head,tail,plate
REGION_POSITION2731080-2771349
TRNA_NUM0
TOTAL_PROTEIN_NUM56
PHAGE_HIT_PROTEIN_NUM36
HYPOTHETICAL_PROTEIN_NUM18
PHAGE+HYPO_PROTEIN_PERCENTAGE96.4%
BACTERIAL_PROTEIN_NUM2
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM14
MOST_COMMON_PHAGE_NAMEPHAGE_Escher_D108
MOST_COMMON_PHAGE_NUM22
MOST_COMMON_PHAGE_PERCENTAGE39.2%
GC_PERCENTAGE48.88%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region