gi|381320234|ref|ABXO00000000.1| Streptococcus pneumoniae 459-5, whole genome shotgun sequencing .2169192, gc%: 39.38%
REGION3
REGION_LENGTH62.9Kb
COMPLETENESS(score)intact(144)
SPECIFIC_KEYWORDtail,capsid,terminase,integrase
REGION_POSITION1431915-1494876
TRNA_NUM0
TOTAL_PROTEIN_NUM53
PHAGE_HIT_PROTEIN_NUM52
HYPOTHETICAL_PROTEIN_NUM1
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM2
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Strept_MM1_NC_003050(51)
PHAGE_Strept_phiBHN167_NC_022791(44)
PHAGE_Strept_phiNJ2_NC_019418(24)
PHAGE_Strept_pyogenes_315_4_NC_004587(12)
PHAGE_Temper_phiNIH1_1_NC_003157(9)
PHAGE_Strept_5093_NC_012753(8)
PHAGE_Strept_PH15_NC_010945(8)
PHAGE_Strept_SM1_NC_004996(7)
PHAGE_Strept_EJ_1_NC_005294(4)
PHAGE_Strept_TP_778L_NC_022776(3)
PHAGE_Strept_phi3396_NC_009018(3)
PHAGE_Lactob_phiadh_NC_000896(2)
PHAGE_Strept_pyogenes_315_1_NC_004584(2)
PHAGE_Strept_Dp_1_NC_015274(2)
PHAGE_Strept_YMC_2011_NC_018285(2)
PHAGE_Lactoc_bIL312_NC_002671(2)
PHAGE_Strept_PH10_NC_012756(2)
PHAGE_Entero_phiEf11_NC_013696(2)
PHAGE_Clostr_phiCD38_2_NC_015568(2)
PHAGE_Strept_TP_J34_NC_020197(2)
PHAGE_Mycoba_L5_NC_001335(1)
PHAGE_Lactoc_P335_sensu_lato_NC_004746(1)
PHAGE_Bacill_GA_1_NC_002649(1)
PHAGE_Clostr_phiC2_NC_009231(1)
PHAGE_Strept_pyogenes_315_5_NC_004588(1)
PHAGE_Megavi_chiliensis_NC_016072(1)
PHAGE_Bacill_BCJA1c_NC_006557(1)
PHAGE_Lister_A500_NC_009810(1)
PHAGE_Entero_EF62phi_NC_017732(1)
PHAGE_Mycoba_SWU1_NC_017973(1)
PHAGE_Clostr_phiMMP02_NC_019421(1)
PHAGE_Megavi_lba_NC_020232(1)
PHAGE_Entero_phiFL3A_NC_013648(1)
PHAGE_Bacill_phi29_NC_011048(1)
PHAGE_Strept_858_NC_010353(1)
PHAGE_Lactob_8014_B1_NC_019916(1)
PHAGE_Lactoc_949_NC_015263(1)
PHAGE_Strept_2972_NC_007019(1)
PHAGE_Lactoc_BM13_NC_021861(1)
PHAGE_Lactoc_Tuc2009_NC_002703(1)
PHAGE_Strept_SMP_NC_008721(1)
PHAGE_Lactoc_bIL309_NC_002668(1)
PHAGE_Strept_O1205_NC_004303(1)
PHAGE_Pedioc_clP1_NC_016161(1)
PHAGE_Lactob_Lrm1_NC_011104(1)
PHAGE_Entero_phiFL1A_NC_013646(1)
PHAGE_Strept_pyogenes_315_6_NC_004589(1)
PHAGE_Lactoc_TP901_1_NC_002747(1)
FIRST_MOST_COMMON_PHAGE_NUM51
FIRST_MOST_COMMON_PHAGE_PERCENTAGE96.22%
GC_PERCENTAGE39.73%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region