gi|381320234|ref|ABXO00000000.1| Streptococcus pneumoniae 459-5, whole genome shotgun sequencing .2169192, gc%: 39.38%
REGION1
REGION_LENGTH14.8Kb
COMPLETENESS(score)incomplete(50)
SPECIFIC_KEYWORDtransposase,integrase
REGION_POSITION118-14960
TRNA_NUM0
TOTAL_PROTEIN_NUM26
PHAGE_HIT_PROTEIN_NUM15
HYPOTHETICAL_PROTEIN_NUM5
PHAGE+HYPO_PROTEIN_PERCENTAGE76.9%
BACTERIAL_PROTEIN_NUM6
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM10
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Strept_MM1_NC_003050(5)
PHAGE_Strept_phiBHN167_NC_022791(4)
PHAGE_Strept_SM1_NC_004996(3)
PHAGE_Strept_PH10_NC_012756(3)
PHAGE_Lactoc_bIL312_NC_002671(2)
PHAGE_Strept_pyogenes_315_6_NC_004589(2)
PHAGE_Salisa_1_NC_017983(1)
PHAGE_Bacill_W.Ph._NC_016563(1)
PHAGE_Entero_P22_NC_002371(1)
PHAGE_Staphy_phi_12_NC_004616(1)
PHAGE_Salmon_SE1_NC_011802(1)
PHAGE_Megavi_chiliensis_NC_016072(1)
PHAGE_Lactob_phiadh_NC_000896(1)
PHAGE_Cellul_phiST_NC_020842(1)
PHAGE_Strept_pyogenes_315_1_NC_004584(1)
PHAGE_Pandor_dulcis_NC_021858(1)
PHAGE_Salmon_7_11_NC_015938(1)
PHAGE_Mycoba_ET08_NC_013650(1)
PHAGE_Cronob_vB_CsaP_GAP52_NC_019402(1)
PHAGE_Aeromo_65_NC_015251(1)
PHAGE_Strept_Dp_1_NC_015274(1)
PHAGE_Strept_EJ_1_NC_005294(1)
PHAGE_Ostreo_2_NC_014789(1)
PHAGE_Ostreo_OlV5_NC_020852(1)
PHAGE_Staphy_47_NC_007054(1)
PHAGE_Microm_MpV1_NC_014767(1)
PHAGE_Bacill_BPS13_NC_018857(1)
PHAGE_Clostr_c_st_NC_007581(1)
PHAGE_Megavi_lba_NC_020232(1)
PHAGE_Strept_YMC_2011_NC_018285(1)
PHAGE_Mycoba_ScottMcG_NC_011269(1)
PHAGE_Ostreo_OlV1_NC_014766(1)
PHAGE_Salmon_PVP_SE1_NC_016071(1)
PHAGE_Entero_4MG_NC_022968(1)
PHAGE_Lactoc_bIL285_NC_002666(1)
PHAGE_Mycoba_Fruitloop_NC_011288(1)
PHAGE_Strept_pyogenes_315_4_NC_004587(1)
PHAGE_Lactoc_Tuc2009_NC_002703(1)
PHAGE_Entero_phiEf11_NC_013696(1)
PHAGE_Microm_12T_NC_020864(1)
PHAGE_Lactoc_bIL309_NC_002668(1)
PHAGE_Cronob_CR3_NC_017974(1)
PHAGE_Lactoc_phiLC3_NC_005822(1)
FIRST_MOST_COMMON_PHAGE_NUM6
FIRST_MOST_COMMON_PHAGE_PERCENTAGE19.23%
GC_PERCENTAGE38.68%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region