gi|189213624|ref|ABLN00000000| Mycobacterium tuberculosis T92 .1, whole genome shotgun .4260358, gc%: 65.13%
REGION3
REGION_LENGTH24.8Kb
COMPLETENESS(score)incomplete(60)
SPECIFIC_KEYWORDintegrase,capsid,head,terminase,recombinase
REGION_POSITION3228210-3253026
TRNA_NUM0
TOTAL_PROTEIN_NUM14
PHAGE_HIT_PROTEIN_NUM7
HYPOTHETICAL_PROTEIN_NUM1
PHAGE+HYPO_PROTEIN_PERCENTAGE57.1%
BACTERIAL_PROTEIN_NUM6
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAMEPHAGE_Strept_R4
MOST_COMMON_PHAGE_NUM1
MOST_COMMON_PHAGE_PERCENTAGE7.1%
GC_PERCENTAGE65.55%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region