gi|159875372|ref|ABHH00000000.1| Carnobacterium sp. AT7 1101238000986, whole genome shotgun .2442118, gc%: 35.28%
REGION2
REGION_LENGTH36.4Kb
COMPLETENESS(score)incomplete(40)
SPECIFIC_KEYWORDtransposase,integrase
REGION_POSITION911448-947913
TRNA_NUM0
TOTAL_PROTEIN_NUM36
PHAGE_HIT_PROTEIN_NUM27
HYPOTHETICAL_PROTEIN_NUM6
PHAGE+HYPO_PROTEIN_PERCENTAGE91.6%
BACTERIAL_PROTEIN_NUM3
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM22
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Lister_B054(5)
PHAGE_Brocho_NF5(4)
PHAGE_Strept_SM1(4)
PHAGE_Entero_phiFL1A(3)
PHAGE_Entero_phiFL3A(3)
PHAGE_Lactoc_bIL312(3)
PHAGE_Bacill_WBeta(2)
PHAGE_Staphy_SA12(2)
PHAGE_Strept_pyogenes_315_3(2)
PHAGE_Strept_PH10(2)
PHAGE_Entero_phiEf11(2)
PHAGE_Clostr_PhiS63(2)
PHAGE_Lactob_Lv_1(2)
PHAGE_Staphy_phiN315(2)
PHAGE_Lactob_Lc_Nu(2)
PHAGE_Bacill_SPP1(2)
PHAGE_Clostr_phiCD27(2)
PHAGE_Entero_phiFL2A(2)
PHAGE_Staphy_phiETA3(2)
PHAGE_Staphy_StB27(2)
PHAGE_Entero_phiFL4A(2)
PHAGE_Bacill_phBC6A52(2)
PHAGE_Clostr_phiC2(1)
PHAGE_Lactob_phig1e(1)
PHAGE_Bacill_Fah(1)
PHAGE_Strept_MM1(1)
PHAGE_Staphy_SA13(1)
PHAGE_Staphy_prophage_phiPV83(1)
PHAGE_Lactob_phiadh(1)
PHAGE_Staphy_phiSLT(1)
PHAGE_Staphy_PH15(1)
PHAGE_Staphy_phiPVL108(1)
PHAGE_Phage_OH2(1)
PHAGE_Strept_EJ_1(1)
PHAGE_Ostreo_OlV5(1)
PHAGE_Ostreo_2(1)
PHAGE_Entero_EF62phi(1)
PHAGE_Lactob_prophage_Lj928(1)
PHAGE_Staphy_phi5967PVL(1)
PHAGE_Bacill_phIS3501(1)
PHAGE_Lactob_AQ113(1)
PHAGE_Clostr_phi_CD119(1)
PHAGE_Staphy_phiNM3(1)
PHAGE_Bacill_Gamma(1)
PHAGE_Bacill_Cherry(1)
PHAGE_Bacill_virus_1(1)
PHAGE_Bacill_SP10(1)
PHAGE_Lister_B025(1)
PHAGE_Paenib_PG1(1)
PHAGE_Lactoc_bIL309(1)
PHAGE_Cellul_phi19:3(1)
PHAGE_Strept_pyogenes_315_5(1)
PHAGE_Bacill_BCJA1c(1)
PHAGE_Pseudo_KPP12(1)
PHAGE_Clostr_phiCD6356(1)
PHAGE_Pseudo_phi297(1)
PHAGE_Bacill_SPBc2(1)
PHAGE_Microm_MpV1(1)
PHAGE_Lactoc_bIL285(1)
PHAGE_Amsact_moorei_entomopoxvirus__L_(1)
PHAGE_Strept_PH15(1)
PHAGE_Plankt_PaV_LD(1)
PHAGE_Bacill_0305phi8_36(1)
PHAGE_Cellul_phi13:2(1)
PHAGE_Clostr_phi3626(1)
PHAGE_Strept_SMP(1)
PHAGE_Staphy_TEM123(1)
PHAGE_Staphy_tp310_1(1)
PHAGE_Lactob_Lrm1(1)
PHAGE_Lactob_phiAT3(1)
PHAGE_Geobac_GBSV1(1)
FIRST_MOST_COMMON_PHAGE_NUM3
FIRST_MOST_COMMON_PHAGE_PERCENTAGE13.88%
GC_PERCENTAGE34.41%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region