gi|558695336|ref|AB828060.1| Staphylococcus epidermidis DNA, pathogenicity island region, .22080, gc%: 30.55%
REGION1
REGION_LENGTH15.3Kb
COMPLETENESS(score)incomplete(20)
SPECIFIC_KEYWORDintegrase
REGION_POSITION1-15307
TRNA_NUM1
TOTAL_PROTEIN_NUM23
PHAGE_HIT_PROTEIN_NUM17
HYPOTHETICAL_PROTEIN_NUM4
PHAGE+HYPO_PROTEIN_PERCENTAGE91.3%
BACTERIAL_PROTEIN_NUM2
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM9
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Staphy_PT1028_NC_007045(10)
PHAGE_Bacill_BtCS33_NC_018085(2)
PHAGE_Staphy_SpaA1_NC_018277(2)
PHAGE_Staphy_phiMR25_NC_010808(2)
PHAGE_Staphy_YMC/09/04/R1988_NC_022758(1)
PHAGE_Staphy_92_NC_007064(1)
PHAGE_Staphy_85_NC_007050(1)
PHAGE_Staphy_SMSAP5_NC_019513(1)
PHAGE_Staphy_phi7401PVL_NC_020199(1)
PHAGE_Staphy_SA12_NC_021801(1)
PHAGE_Strept_PH15_NC_010945(1)
PHAGE_Anomal_entomopoxvirus_NC_023426(1)
PHAGE_Staphy_phi2958PVL_NC_011344(1)
PHAGE_Staphy_phiETA3_NC_008799(1)
PHAGE_Staphy_StB27_NC_019914(1)
PHAGE_Clostr_phi3626_NC_003524(1)
PHAGE_Strept_P9_NC_009819(1)
PHAGE_Acanth_moumouvirus_NC_020104(1)
PHAGE_Entero_phiFL4A_NC_013644(1)
PHAGE_Bacill_SPBc2_NC_001884(1)
PHAGE_Choris_'L'_NC_021249(1)
PHAGE_Clostr_phiMMP02_NC_019421(1)
PHAGE_Bacill_phIS3501_NC_019502(1)
PHAGE_Bacill_phiCM3_NC_023599(1)
PHAGE_Strept_pyogenes_315_6_NC_004589(1)
PHAGE_Staphy_tp310_2_NC_009762(1)
PHAGE_Staphy_phiSauS_IPLA88_NC_011614(1)
PHAGE_Staphy_StauST398_5_NC_023500(1)
PHAGE_Staphy_37_NC_007055(1)
FIRST_MOST_COMMON_PHAGE_NUM9
FIRST_MOST_COMMON_PHAGE_PERCENTAGE43.47%
GC_PERCENTAGE30.15%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region