gi|393714847|ref|AB690438.1| Staphylococcus aureus DNA, pathogenicity island, complete .12111, gc%: 31.85%
REGION1
REGION_LENGTH10.6Kb
COMPLETENESS(score)questionable(75)
SPECIFIC_KEYWORDNA
REGION_POSITION1372-12014
TRNA_NUM0
TOTAL_PROTEIN_NUM18
PHAGE_HIT_PROTEIN_NUM16
HYPOTHETICAL_PROTEIN_NUM2
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Staphy_PT1028_NC_007045(11)
PHAGE_Staphy_StauST398_2_NC_021323(2)
PHAGE_Strept_pyogenes_315_5_NC_004588(2)
PHAGE_Staphy_phiMR25_NC_010808(2)
PHAGE_Lactoc_bIL286_NC_002667(2)
PHAGE_Lactob_Sha1_NC_019489(2)
PHAGE_Strept_20617_NC_023503(1)
PHAGE_Strept_Sfi21_NC_000872(1)
PHAGE_Staphy_YMC/09/04/R1988_NC_022758(1)
PHAGE_Bacill_PBC1_NC_017976(1)
PHAGE_Staphy_phiSauS_IPLA35_NC_011612(1)
PHAGE_Staphy_92_NC_007064(1)
PHAGE_Staphy_tp310_3_NC_009763(1)
PHAGE_Staphy_85_NC_007050(1)
PHAGE_Staphy_SMSAP5_NC_019513(1)
PHAGE_Staphy_SA12_NC_021801(1)
PHAGE_Staphy_71_NC_007059(1)
PHAGE_Staphy_phi2958PVL_NC_011344(1)
PHAGE_Staphy_phi5967PVL_NC_019921(1)
PHAGE_Strept_pyogenes_315_2_NC_004585(1)
PHAGE_Staphy_37_NC_007055(1)
PHAGE_Staphy_phiN315_NC_004740(1)
PHAGE_Staphy_phiNM3_NC_008617(1)
PHAGE_Staphy_phi7401PVL_NC_020199(1)
PHAGE_Lactob_Lc_Nu_NC_007501(1)
PHAGE_Staphy_phiETA3_NC_008799(1)
PHAGE_Staphy_StB27_NC_019914(1)
PHAGE_Lactob_A2_NC_004112(1)
PHAGE_Staphy_StauST398_1_NC_021326(1)
PHAGE_Entero_phiFL4A_NC_013644(1)
PHAGE_Lactob_Lrm1_NC_011104(1)
PHAGE_Staphy_tp310_2_NC_009762(1)
PHAGE_Staphy_phiSauS_IPLA88_NC_011614(1)
PHAGE_Staphy_StauST398_5_NC_023500(1)
FIRST_MOST_COMMON_PHAGE_NUM10
FIRST_MOST_COMMON_PHAGE_PERCENTAGE61.11%
GC_PERCENTAGE31.96%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region