gi|386780297|ref|AB679717.1| Staphylococcus aureus DNA, pathogenicity island SaPIj50, complete .15206, gc%: 30.21%
REGION1
REGION_LENGTH15.1Kb
COMPLETENESS(score)incomplete(30)
SPECIFIC_KEYWORDintegrase,capsid
REGION_POSITION1-15192
TRNA_NUM0
TOTAL_PROTEIN_NUM22
PHAGE_HIT_PROTEIN_NUM17
HYPOTHETICAL_PROTEIN_NUM4
PHAGE+HYPO_PROTEIN_PERCENTAGE95.4%
BACTERIAL_PROTEIN_NUM1
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM8
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Staphy_PT1028_NC_007045(9)
PHAGE_Lactoc_bIL311_NC_002670(3)
PHAGE_Bacill_BtCS33_NC_018085(2)
PHAGE_Strept_pyogenes_315_5_NC_004588(2)
PHAGE_Staphy_SpaA1_NC_018277(2)
PHAGE_Strept_pyogenes_315_2_NC_004585(2)
PHAGE_Staphy_phiN315_NC_004740(1)
PHAGE_Staphy_phiNM3_NC_008617(1)
PHAGE_Staphy_92_NC_007064(1)
PHAGE_Staphy_85_NC_007050(1)
PHAGE_Staphy_EW_NC_007056(1)
PHAGE_Strept_PH15_NC_010945(1)
PHAGE_Staphy_71_NC_007059(1)
PHAGE_Clostr_phi3626_NC_003524(1)
PHAGE_Strept_SMP_NC_008721(1)
PHAGE_Staphy_StauST398_1_NC_021326(1)
PHAGE_Staphy_phi5967PVL_NC_019921(1)
PHAGE_Staphy_phiMR25_NC_010808(1)
PHAGE_Clostr_phiMMP02_NC_019421(1)
PHAGE_Bacill_phIS3501_NC_019502(1)
PHAGE_Bacill_CampHawk_NC_022761(1)
PHAGE_Bacill_phiCM3_NC_023599(1)
PHAGE_Lactob_phiJB_NC_022775(1)
PHAGE_Campyl_CP30A_NC_018861(1)
PHAGE_Staphy_StauST398_5_NC_023500(1)
PHAGE_Staphy_phiSauS_IPLA88_NC_011614(1)
FIRST_MOST_COMMON_PHAGE_NUM9
FIRST_MOST_COMMON_PHAGE_PERCENTAGE40.9%
GC_PERCENTAGE30.17%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region