gi|315518911|ref|AB597179.1| Ralstonia phage RSB2 DNA, complete genome. .40411, gc%: 61.75%
REGION1
REGION_LENGTH32.4Kb
COMPLETENESS(score)intact(100)
SPECIFIC_KEYWORDvirion,tail,capsid
REGION_POSITION7145-39643
TRNA_NUM0
TOTAL_PROTEIN_NUM33
PHAGE_HIT_PROTEIN_NUM25
HYPOTHETICAL_PROTEIN_NUM8
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM11
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Vibrio_N4(12)
PHAGE_Vibrio_VP4(11)
PHAGE_Vibrio_ICP3(11)
PHAGE_Pseudo_1(8)
PHAGE_Pseudo_phiIBB_PF7A(6)
PHAGE_Yersin_12(5)
PHAGE_Stenot_IME15(5)
PHAGE_Entero_285P(5)
PHAGE_Kluyve_Kvp1(5)
PHAGE_Salmon_JL2(4)
PHAGE_Pseudo_phi15(4)
PHAGE_Pseudo_Phi_S1(4)
PHAGE_Entero_BA14(3)
PHAGE_Entero_K1F(3)
PHAGE_Klebsi_K11(3)
PHAGE_Entero_EcoDS1(3)
PHAGE_Yersin_phiA1122(3)
PHAGE_Entero_K30(3)
PHAGE_Morgan_MmP1(2)
PHAGE_Entero_T7(2)
PHAGE_Entero_T3(2)
PHAGE_Entero_13a(2)
PHAGE_Yersin_Berlin(2)
PHAGE_Ralsto_RSB1(2)
PHAGE_Salmon_Vi06(2)
PHAGE_Liston_phiHSIC(1)
PHAGE_Klebsi_KP32(1)
PHAGE_Burkho_BcepGomr(1)
PHAGE_Yersin_Yepe2(1)
PHAGE_Saimir_1(1)
PHAGE_Erwini_vB_EamP_L1(1)
FIRST_MOST_COMMON_PHAGE_NUM11
FIRST_MOST_COMMON_PHAGE_PERCENTAGE36.36%
GC_PERCENTAGE62.14%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region