gi|4589740|ref|AB011549.2| Escherichia coli O157:H7 str. Sakai plasmid pO157 DNA, complete .92721, gc%: 47.60%
REGION1
REGION_LENGTH23.5Kb
COMPLETENESS(score)incomplete(40)
SPECIFIC_KEYWORDintegrase,transposase
REGION_POSITION24181-47683
TRNA_NUM0
TOTAL_PROTEIN_NUM7
PHAGE_HIT_PROTEIN_NUM6
HYPOTHETICAL_PROTEIN_NUM0
PHAGE+HYPO_PROTEIN_PERCENTAGE85.7%
BACTERIAL_PROTEIN_NUM1
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM4
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Entero_N15_NC_001901(2)
PHAGE_Entero_P1_NC_005856(2)
PHAGE_Klebsi_phiKO2_NC_005857(2)
PHAGE_Stx2_converting_II_NC_004914(2)
PHAGE_Entero_VT2phi_272_NC_028656(2)
PHAGE_Yersin_PY54_NC_005069(2)
PHAGE_Mycoba_Giles_NC_009993(1)
PHAGE_Bordet_BIP_1_NC_005809(1)
PHAGE_Bordet_BMP_1_NC_005808(1)
PHAGE_Mycoba_Squirty_NC_026588(1)
PHAGE_Melano_sanguinipes_entomopoxvirus_NC_001993(1)
PHAGE_Brevib_Jenst_NC_028805(1)
PHAGE_Entero_BP_4795_NC_004813(1)
PHAGE_Mycoba_Redi_NC_023730(1)
PHAGE_Vibrio_VP58.5_NC_027981(1)
PHAGE_Brevib_Sundance_NC_028749(1)
PHAGE_Stx2_converting_1717_NC_011357(1)
PHAGE_Mycoba_Carcharodon_NC_028779(1)
PHAGE_Bordet_BPP_1_NC_005357(1)
FIRST_MOST_COMMON_PHAGE_NUM2
FIRST_MOST_COMMON_PHAGE_PERCENTAGE28.57%
GC_PERCENTAGE53.47%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region