gi|84380033|ref|AAMR00000000.1| Vibrio splendidus 12B01 1099451319047, whole genome shotgun .5596386, gc%: 44.06%
REGION4
REGION_LENGTH38.9Kb
COMPLETENESS(score)intact(150)
SPECIFIC_KEYWORDtail,lysin,head,terminase,capsid,portal,integrase
REGION_POSITION4195766-4234694
TRNA_NUM0
TOTAL_PROTEIN_NUM48
PHAGE_HIT_PROTEIN_NUM40
HYPOTHETICAL_PROTEIN_NUM8
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Vibrio_kappa(31)
PHAGE_Vibrio_K139(26)
PHAGE_Aeromo_phiO18P(24)
PHAGE_Haemop_HP2(15)
PHAGE_Haemop_HP1(15)
PHAGE_Pasteu_F108(12)
PHAGE_Erwini_ENT90(4)
PHAGE_Entero_PsP3(3)
PHAGE_Mannhe_vB_MhM_1152AP(2)
PHAGE_Escher_HK639(1)
PHAGE_Entero_P1(1)
PHAGE_Salmon_RE_2010(1)
PHAGE_Salmon_ST64B(1)
PHAGE_Vibrio_vB_VpaM_MAR(1)
PHAGE_Vibrio_VHML(1)
PHAGE_Burkho_phiE12_2(1)
PHAGE_Entero_EcoDS1(1)
PHAGE_Vibrio_VP882(1)
PHAGE_Mannhe_phiMHaA1(1)
PHAGE_Burkho_phi52237(1)
PHAGE_Entero_phiEf11(1)
PHAGE_Entero_mEp460(1)
PHAGE_Entero_cdtI(1)
PHAGE_Entero_Fels_2(1)
PHAGE_Vibrio_12B3(1)
PHAGE_Cronob_phiES15(1)
PHAGE_Clostr_phiMMP02(1)
PHAGE_Vibrio_12B12(1)
PHAGE_Vibrio_pYD38_A(1)
PHAGE_Escher_ADB_2(1)
PHAGE_Burkho_phiE202(1)
FIRST_MOST_COMMON_PHAGE_NUM32
FIRST_MOST_COMMON_PHAGE_PERCENTAGE64.58%
GC_PERCENTAGE45.27%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region