gi|84380033|ref|AAMR00000000.1| Vibrio splendidus 12B01 1099451319047, whole genome shotgun .5596386, gc%: 44.06%
REGION3
REGION_LENGTH21.7Kb
COMPLETENESS(score)incomplete(30)
SPECIFIC_KEYWORDintegrase
REGION_POSITION3994726-4016481
TRNA_NUM0
TOTAL_PROTEIN_NUM24
PHAGE_HIT_PROTEIN_NUM10
HYPOTHETICAL_PROTEIN_NUM13
PHAGE+HYPO_PROTEIN_PERCENTAGE95.8%
BACTERIAL_PROTEIN_NUM1
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM6
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Pseudo_PM2(2)
PHAGE_Entero_mEp460(2)
PHAGE_Cronob_phiES15(2)
PHAGE_Aeromo_phiO18P(2)
PHAGE_Burkho_AH2(2)
PHAGE_Erwini_ENT90(1)
PHAGE_Entero_JSE(1)
PHAGE_Pseudo_PAJU2(1)
PHAGE_Entero_RB49(1)
PHAGE_Megavi_chiliensis(1)
PHAGE_Vibrio_12B8(1)
PHAGE_Pseudo_MP38(1)
PHAGE_Vibrio_PWH3a_P1(1)
PHAGE_Pectob_phiTE(1)
PHAGE_Acanth_turfacea_Chlorella_virus_1(1)
PHAGE_Pasteu_F108(1)
PHAGE_Pseudo_JBD30(1)
PHAGE_Burkho_BcepIL02(1)
PHAGE_Entero_Phi1(1)
PHAGE_Punice_HMO_2011(1)
PHAGE_Shigel_SfII(1)
PHAGE_Burkho_DC1(1)
PHAGE_Acanth_moumouvirus(1)
PHAGE_Burkho_BcepMigl(1)
PHAGE_Entero_PsP3(1)
PHAGE_Pseudo_PA11(1)
PHAGE_Entero_phiP27(1)
PHAGE_Vibrio_12B12(1)
PHAGE_Megavi_lba(1)
FIRST_MOST_COMMON_PHAGE_NUM3
FIRST_MOST_COMMON_PHAGE_PERCENTAGE8.33%
GC_PERCENTAGE43.14%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region