gi|84380033|ref|AAMR00000000.1| Vibrio splendidus 12B01 1099451319047, whole genome shotgun .5596386, gc%: 44.06%
REGION1
REGION_LENGTH15.9Kb
COMPLETENESS(score)incomplete(30)
SPECIFIC_KEYWORDintegrase,tail
REGION_POSITION3633020-3649015
TRNA_NUM0
TOTAL_PROTEIN_NUM16
PHAGE_HIT_PROTEIN_NUM7
HYPOTHETICAL_PROTEIN_NUM9
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Pectob_ZF40(2)
PHAGE_Entero_N15(1)
PHAGE_Salmon_vB_SemP_Emek(1)
PHAGE_Entero_mEp235(1)
PHAGE_Klebsi_phiKO2(1)
PHAGE_Staphy_phi7401PVL(1)
PHAGE_Entero_phiV10(1)
PHAGE_Entero_mEp390(1)
PHAGE_Burkho_BcepIL02(1)
PHAGE_Marino_P12026(1)
PHAGE_Entero_HK544(1)
PHAGE_Gifsy_1(1)
PHAGE_Bacill_SP10(1)
PHAGE_Glossi_pallidipes_salivary_gland_hypertrophy_virus(1)
PHAGE_Staphy_phiMR11(1)
PHAGE_Burkho_DC1(1)
PHAGE_Pseudo_phi297(1)
PHAGE_Entero_HK140(1)
PHAGE_Entero_IME10(1)
PHAGE_Salmon_vB_SosS_Oslo(1)
PHAGE_Burkho_phiE125(1)
PHAGE_Staphy_X2(1)
PHAGE_Burkho_phi1026b(1)
PHAGE_Salmon_SPN3UB(1)
PHAGE_Staphy_37(1)
FIRST_MOST_COMMON_PHAGE_NUM1
FIRST_MOST_COMMON_PHAGE_PERCENTAGE12.5%
GC_PERCENTAGE41.44%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region