gi|238729530|ref|AALF00000000.2| Yersinia intermedia ATCC 29909 , whole genome shotgun .4711317, gc%: 47.44%
REGION4
REGION_LENGTH17.6Kb
COMPLETENESS(score)incomplete(30)
SPECIFIC_KEYWORDplate,integrase
REGION_POSITION3643218-3660848
TRNA_NUM0
TOTAL_PROTEIN_NUM9
PHAGE_HIT_PROTEIN_NUM7
HYPOTHETICAL_PROTEIN_NUM0
PHAGE+HYPO_PROTEIN_PERCENTAGE77.7%
BACTERIAL_PROTEIN_NUM2
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM6
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Salmon_SP_004(2)
PHAGE_Yersin_L_413C(2)
PHAGE_Feldma_species_virus(2)
PHAGE_Entero_PsP3(2)
PHAGE_Entero_P2(2)
PHAGE_Ectoca_siliculosus_virus_1(1)
PHAGE_Entero_N15(1)
PHAGE_Erwini_ENT90(1)
PHAGE_Ostreo_OlV1(1)
PHAGE_Megavi_chiliensis(1)
PHAGE_Klebsi_phiKO2(1)
PHAGE_Vibrio_kappa(1)
PHAGE_Ostreo_OlV5(1)
PHAGE_Ostreo_2(1)
PHAGE_Ostreo_virus_OsV5(1)
PHAGE_Acanth_mimivirus(1)
PHAGE_Megavi_lba(1)
FIRST_MOST_COMMON_PHAGE_NUM2
FIRST_MOST_COMMON_PHAGE_PERCENTAGE22.22%
GC_PERCENTAGE48.48%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region