gi|238729530|ref|AALF00000000.2| Yersinia intermedia ATCC 29909 , whole genome shotgun .4711317, gc%: 47.44%
REGION3
REGION_LENGTH7.8Kb
COMPLETENESS(score)questionable(80)
SPECIFIC_KEYWORDintegrase,tail,transposase,plate
REGION_POSITION1468404-1476295
TRNA_NUM2
TOTAL_PROTEIN_NUM12
PHAGE_HIT_PROTEIN_NUM9
HYPOTHETICAL_PROTEIN_NUM3
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Erwini_ENT90(3)
PHAGE_Salmon_RE_2010(3)
PHAGE_Entero_Fels_2(3)
PHAGE_Ralsto_phiRSA1(1)
PHAGE_Escher_HK639(1)
PHAGE_Sodali_phiSG1(1)
PHAGE_Salmon_ST64B(1)
PHAGE_Salmon_SP_004(1)
PHAGE_Pectob_ZF40(1)
PHAGE_Cafete_BV_PW1(1)
PHAGE_Burkho_KS5(1)
PHAGE_Entero_P2(1)
PHAGE_Entero_PsP3(1)
PHAGE_Yersin_L_413C(1)
PHAGE_Entero_mEp390(1)
FIRST_MOST_COMMON_PHAGE_NUM3
FIRST_MOST_COMMON_PHAGE_PERCENTAGE25%
GC_PERCENTAGE44.83%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region