gi|238729530|ref|AALF00000000.2| Yersinia intermedia ATCC 29909 , whole genome shotgun .4711317, gc%: 47.44%
REGION2
REGION_LENGTH29.3Kb
COMPLETENESS(score)incomplete(30)
SPECIFIC_KEYWORDterminase,tail
REGION_POSITION455291-484673
TRNA_NUM0
TOTAL_PROTEIN_NUM11
PHAGE_HIT_PROTEIN_NUM10
HYPOTHETICAL_PROTEIN_NUM1
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPyes
PHAGE_SPECIES_NUM7
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Salmon_ST160(3)
PHAGE_Entero_ST104(3)
PHAGE_Entero_ST64T(3)
PHAGE_Salmon_SE1(2)
PHAGE_Escher_TL_2011b(2)
PHAGE_Bacter_APSE_2(1)
PHAGE_Pseudo_F116(1)
PHAGE_Entero_P22(1)
PHAGE_Burkho_Bcep22(1)
PHAGE_Salmon_c341(1)
PHAGE_Gifsy_2(1)
PHAGE_Erwini_PEp14(1)
PHAGE_Pseudo_vB_PaeS_PMG1(1)
PHAGE_Salmon_SPN9CC(1)
PHAGE_Entero_mEpX1(1)
PHAGE_Entero_YYZ_2008(1)
PHAGE_Pseudo_D3(1)
PHAGE_Entero_mEp460(1)
PHAGE_Acidia_two_tailed_virus(1)
PHAGE_Entero_cdtI(1)
PHAGE_Burkho_DC1(1)
PHAGE_Parame_bursaria_Chlorella_virus_AR158(1)
PHAGE_Cronob_ENT47670(1)
PHAGE_Cronob_phiES15(1)
PHAGE_Entero_mEp237(1)
FIRST_MOST_COMMON_PHAGE_NUM3
FIRST_MOST_COMMON_PHAGE_PERCENTAGE27.27%
GC_PERCENTAGE45.82%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region