gi|238729530|ref|AALF00000000.2| Yersinia intermedia ATCC 29909 , whole genome shotgun .4711317, gc%: 47.44%
REGION1
REGION_LENGTH19.6Kb
COMPLETENESS(score)intact(100)
SPECIFIC_KEYWORDterminase,portal,head,tail
REGION_POSITION439577-459204
TRNA_NUM0
TOTAL_PROTEIN_NUM19
PHAGE_HIT_PROTEIN_NUM16
HYPOTHETICAL_PROTEIN_NUM3
PHAGE+HYPO_PROTEIN_PERCENTAGE100%
BACTERIAL_PROTEIN_NUM0
ATT_SITE_SHOWUPno
PHAGE_SPECIES_NUM8
MOST_COMMON_PHAGE_NAME(hit_genes_count)PHAGE_Entero_c_1(7)
PHAGE_Entero_mEp213(7)
PHAGE_Entero_mEp460(5)
PHAGE_Entero_HK446(3)
PHAGE_Pseudo_vB_PaeS_PMG1(3)
PHAGE_Salmon_Fels_1(3)
PHAGE_Pseudo_PAJU2(3)
PHAGE_Gifsy_2(3)
PHAGE_Pseudo_D3(3)
PHAGE_Entero_cdtI(3)
PHAGE_Entero_HK544(2)
PHAGE_Pseudo_phi297(2)
PHAGE_Escher_HK75(2)
PHAGE_Salmon_ST160(2)
PHAGE_Cronob_ENT39118(2)
PHAGE_Entero_ST64T(2)
PHAGE_Salmon_SE1(1)
PHAGE_Entero_lambda(1)
PHAGE_Entero_RB43(1)
PHAGE_Entero_mEpX1(1)
PHAGE_Entero_Lw1(1)
PHAGE_Entero_mEp390(1)
PHAGE_Entero_HK629(1)
PHAGE_Salmon_SE2(1)
PHAGE_Entero_HK542(1)
PHAGE_Stx2_converting_1717(1)
PHAGE_Entero_RB16(1)
PHAGE_Entero_mEp237(1)
PHAGE_Entero_HK225(1)
PHAGE_Entero_N15(1)
PHAGE_Entero_HK97(1)
PHAGE_Salmon_SPN9CC(1)
PHAGE_Entero_YYZ_2008(1)
PHAGE_Entero_ST104(1)
PHAGE_Yersin_PY54(1)
PHAGE_Entero_HK630(1)
FIRST_MOST_COMMON_PHAGE_NUM7
FIRST_MOST_COMMON_PHAGE_PERCENTAGE36.84%
GC_PERCENTAGE50.25%
Legend:
REGION: the number assigned to the region
REGION_LENGTH: the length of the sequence of that region (in bp)
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region