Streptococcus pneumoniae GA41437, whole genome shotgun sequencing [asmbl_id: NC_000000].2155390, GC%: 39.75%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 71 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1165..177 attL    GGGGGGCTTTTGT 0.0 Click
22480..2491 attL    TTTTCAAAAAAA 0.0 Click
3complement(11001..11207) PROPHAGE_Staphy_N315: transposase; SPAR71_0008; phage(gi15927655) 6e-05 Click
4complement(11541..11744) adenylosuccinate synthetase; SPAR71_0010 0.0 Click
512064..12300 recombination regulator RecX; SPAR71_0011 0.0 Click
612531..13817 PHAGE_Megavi_lba_NC_020232: adenylosuccinate synthetase; SPAR71_0012; phage(gi448826112) 5e-72 Click
7complement(14059..15207) PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp01; SPAR71_0013; phage(gi238821318) 0.0 Click
8complement(15377..16291) PHAGE_Strept_SM1_NC_004996: gp2; SPAR71_0014; phage(gi32469433) 3e-46 Click
9complement(16304..17059) PHAGE_Strept_pyogenes_315_2_NC_004585: putative repressor protein; SPAR71_0015; phage(gi28876261) 6e-88 Click
1017200..17211 attL    CAATTATAAAAA 0.0 Click
1117232..17438 PHAGE_Staphy_29_NC_007061: ORF049; SPAR71_0016; phage(gi66396236) 2e-10 Click
1217460..17642 hypothetical protein; SPAR71_0017 0.0 Click
1317654..17782 PHAGE_Strept_SM1_NC_004996: gp13; SPAR71_0018; phage(gi32469444) 3e-15 Click
14complement(17745..18326) PHAGE_Strept_SM1_NC_004996: gp14; SPAR71_0019; phage(gi32469445) 3e-104 Click
1518477..19190 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp08; SPAR71_0020; phage(gi238821325) 2e-131 Click
1619203..19460 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp09; SPAR71_0021; phage(gi238821326) 7e-41 Click
1719546..19866 PHAGE_Strept_EJ_1_NC_005294: hypothetical protein EJ-1p17; SPAR71_0022; phage(gi39653691) 2e-39 Click
1819882..20175 PHAGE_Strept_SM1_NC_004996: gp18; SPAR71_0023; phage(gi32469449) 5e-07 Click
1920159..20995 PHAGE_Strept_SM1_NC_004996: gp19; SPAR71_0024; phage(gi32469450) 8e-67 Click
2020983..21141 PHAGE_Strept_SM1_NC_004996: gp20; SPAR71_0025; phage(gi32469451) 7e-13 Click
2121264..21905 PHAGE_Strept_SM1_NC_004996: gp21; SPAR71_0026; phage(gi32469452) 9e-105 Click
2221920..22114 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp12; SPAR71_0027; phage(gi238821329) 8e-19 Click
2322114..22341 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp15; SPAR71_0028; phage(gi238821332) 1e-15 Click
2422468..22635 hypothetical protein; SPAR71_0029 0.0 Click
2522806..23120 PHAGE_Strept_phiBHN167_NC_022791: phage protein; SPAR71_0030; phage(gi557745659) 3e-57 Click
2623122..23646 PHAGE_Strept_EJ_1_NC_005294: hypothetical protein EJ-1p26; SPAR71_0031; phage(gi39653700) 2e-33 Click
2723793..23933 PHAGE_Strept_phiBHN167_NC_022791: phage protein; SPAR71_0032; phage(gi557745657) 9e-20 Click
2823933..24106 PHAGE_Strept_MM1_NC_003050: hypothetical protein MM1p25; SPAR71_0033; phage(gi15088766) 5e-24 Click
2924169..24426 PHAGE_Strept_MM1_NC_003050: putative DNA methylase; SPAR71_0034; phage(gi15088756) 2e-41 Click
3024736..25200 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp27; SPAR71_0035; phage(gi238821344) 3e-07 Click
3125308..25850 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp28; SPAR71_0036; phage(gi238821345) 6e-63 Click
3226391..26597 PHAGE_Lactoc_P008_NC_008363: putative HNH endonuclease; SPAR71_0037; phage(gi115304213) 4e-09 Click
3326740..27219 hypothetical protein; SPAR71_0038 0.0 Click
3427212..28924 PHAGE_Leucon_Lmd1_NC_018273: putative terminase large subunit; SPAR71_0039; phage(gi399528546) 3e-65 Click
3529149..30075 PHAGE_Lactoc_P008_NC_008363: putative portal protein; SPAR71_0040; phage(gi115304214) 3e-16 Click
3630122..30664 PHAGE_Entero_phiP27_NC_003356: putative prohead protease; SPAR71_0041; phage(gi18249903) 2e-15 Click
3730678..31931 PHAGE_Lactoc_bIL170_NC_001909: putative minor structural protein; SPAR71_0042; phage(gi9630572) 2e-13 Click
3831957..32292 hypothetical protein; SPAR71_0043 0.0 Click
3932289..32594 hypothetical protein; SPAR71_0044 0.0 Click
4032594..32941 hypothetical protein; SPAR71_0045 0.0 Click
4132949..33272 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp40; SPAR71_0046; phage(gi238821357) 2e-10 Click
4233462..33953 PHAGE_Lactoc_c2_NC_001706: major tail shaft protein; SPAR71_0047; phage(gi9628689) 1e-05 Click
4333955..34437 hypothetical protein; SPAR71_0048 0.0 Click
4434469..34597 hypothetical protein; SPAR71_0049 0.0 Click
4534617..37355 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp44; SPAR71_0050; phage(gi238821361) 0.0 Click
4637352..38074 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp45; SPAR71_0051; phage(gi238821362) 1e-93 Click
4741318..44479 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp46; SPAR71_0052; phage(gi238821363) 5e-85 Click
4844476..44592 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp46; SPAR71_0053; phage(gi238821363) 1e-09 Click
4944573..44776 PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp47; SPAR71_0054; phage(gi238821364) 5e-27 Click
5044779..45129 PHAGE_Strept_SMP_NC_008721: hypothetical protein; SPAR71_0055; phage(gi119953750) 9e-44 Click
5145139..45555 PHAGE_Strept_MM1_NC_003050: putative holin 1; SPAR71_0056; phage(gi15088791) 4e-69 Click
5245559..45891 PHAGE_Strept_MM1_NC_003050: putative holin 2; SPAR71_0057; phage(gi15088792) 4e-53 Click
5345895..46851 PHAGE_Strept_phiBHN167_NC_022791: phage lytic amidase; SPAR71_0058; phage(gi557745681) 0.0 Click
54complement(46989..47168) PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp52; SPAR71_0059; phage(gi238821369) 4e-25 Click
5547213..47224 attR    CAATTATAAAAA 0.0 Click
5647544..47555 attR    TTTTCAAAAAAA 0.0 Click
5747737..48237 PHAGE_Microm_MpV1_NC_014767: hypothetical protein; SPAR71_0060; phage(gi313768407) 2e-07 Click
58complement(48412..49554) PHAGE_Strept_phiBHN167_NC_022791: phage integrase; SPAR71_0061; phage(gi557745680) 0.0 Click
59complement(49632..50678) type I restriction enzyme R domain protein; SPAR71_0062 0.0 Click
60complement(50694..51074) PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp03; SPAR71_0063; phage(gi238821320) 6e-38 Click
61complement(51087..51350) PHAGE_Mycoba_Fruitloop_NC_011288: gp41; SPAR71_0064; phage(gi206599921) 3e-07 Click
62complement(51350..51583) hypothetical protein; SPAR71_0065 0.0 Click
63complement(51583..51951) PHAGE_Strept_PH10_NC_012756: hypothetical protein PH10_gp04; SPAR71_0066; phage(gi238821321) 2e-35 Click
6452248..52379 hypothetical protein; SPAR71_0067 0.0 Click
6552669..52860 PHAGE_Strept_MM1_NC_003050: hypothetical protein MM1p05; SPAR71_0068; phage(gi15088748) 9e-26 Click
6652883..53086 hypothetical protein; SPAR71_0069 0.0 Click
67complement(53241..53408) PHAGE_Entero_P22_NC_002371: hypothetical protein P22gp16; SPAR71_0070; phage(gi9635553) 2e-06 Click
6853479..53793 PHAGE_Strept_phiBHN167_NC_022791: phage lytic amidase; SPAR71_0071; phage(gi557745681) 2e-59 Click
6954067..54510 PHAGE_Clostr_c_st_NC_007581: putative dUTPase; SPAR71_0072; phage(gi80159764) 3e-30 Click
7054470..55027 phosphoglycerate mutase family protein; SPAR71_0073 0.0 Click
7155140..56402 PHAGE_Bacill_W.Ph._NC_016563: gp46; SPAR71_0074; phage(gi371671106) 1e-06 Click
7256475..56972 carbonic anhydrase family protein; SPAR71_0075 0.0 Click
7356997..57656 putative membrane protein; SPAR71_0076 0.0 Click
7457649..57780 ribose-phosphate pyrophosphokinase; SPAR71_0077 0.0 Click
7557925..58893 PHAGE_Salmon_7_11_NC_015938: putative ribose-phosphate pyrophosphokinase; SPAR71_0078; phage(gi345461227) 2e-19 Click
76complement(59015..59308) PROPHAGE_Staphy_N315: transposase; SPAR71_0079; phage(gi15927655) 8e-06 Click
7765267..65279 attR    GGGGGGCTTTTGT 0.0 Click

Region 2, total : 21 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1969819..969830 attL    AAAAATAAAAGT 0.0 Click
2979461..980060 PHAGE_Entero_RB69_NC_004928: Tk thymidine kinase; SPAR71_1073; phage(gi32453595) 4e-47 Click
3980050..980529 acetyltransferase family protein; SPAR71_1074 0.0 Click
4980539..981618 PHAGE_Mycoba_ScottMcG_NC_011269: gp204; SPAR71_1075; phage(gi203459047) 5e-06 Click
5981618..982457 PHAGE_Mythim_'L'_NC_021246: unknown similar to AMEV004; SPAR71_1076; phage(gi506497757) 5e-05 Click
6982441..983043 PHAGE_Pandor_salinus_NC_022098: tRNA threonylcarbamoyl adenosine biosynthesis; SPAR71_1077; phage(gi531037074) 1e-18 Click
7983045..983476 acetyltransferase family protein; SPAR71_1078 0.0 Click
8983537..984793 PHAGE_Aeromo_31_NC_007022: hypothetical protein PHG31p8; SPAR71_1079; phage(gi66391812) 3e-102 Click
9984801..985775 PHAGE_Clostr_phiMMP02_NC_019421: hypothetical protein; SPAR71_1080; phage(gi414090433) 7e-08 Click
10985775..986389 PHAGE_Bacill_MG_B1_NC_021336: morphogenesis protein; SPAR71_1081; phage(gi509141248) 3e-28 Click
11986463..987437 hypothetical protein; SPAR71_1082 0.0 Click
12987511..989142 PHAGE_Acanth_moumouvirus_NC_020104: SAM-dependent methyltransferase; SPAR71_1083; phage(gi441432344) 4e-28 Click
13989878..990096 transcriptional regulator; SPAR71_1084 0.0 Click
14990489..991127 iron ABC transporter, iron-binding protein; SPAR71_1085 0.0 Click
15991124..991513 iron-compound ABC transporter, iron compound-binding protein; SPAR71_1086 0.0 Click
16991503..992510 fecCD transport family protein; SPAR71_1087 0.0 Click
17992510..992971 fecCD transport family protein; SPAR71_1088 0.0 Click
18complement(992991..993404) hypothetical protein; SPAR71_1089 0.0 Click
19993391..993516 putative membrane protein; SPAR71_1090 0.0 Click
20993569..994309 PHAGE_Amsact_moorei_entomopoxvirus__L__NC_002520: putative ATP-binding cassette transporter; SPAR71_1091; phage(gi9964444) 1e-13 Click
21995235..995366 hypothetical protein; SPAR71_1092 0.0 Click
22996050..996211 hypothetical protein; SPAR71_1093 0.0 Click
23996312..996323 attR    AAAAATAAAAGT 0.0 Click
24996394..997980 PHAGE_Deep_s_D6E_NC_019544: recombinase; SPAR71_1094; phage(gi423262352) 1e-34 Click

Region 3, total : 9 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11462513..1463481 PHAGE_Lactoc_949_NC_015263: putative ribonucleotide diphosphate reductase alpha subunit; SPAR71_1587; phage(gi327197952) 1e-05 Click
21463645..1463656 attL    TTGCCCCTTTTT 0.0 Click
3complement(1463735..1464691) PHAGE_Strept_MM1_NC_003050: N-acetylmuramoyl-L-alanine amidase; SPAR71_1588; phage(gi15088793) 0.0 Click
4complement(1464695..1465027) PHAGE_Strept_MM1_NC_003050: putative holin 2; SPAR71_1589; phage(gi15088792) 2e-43 Click
5complement(1465031..1465447) PHAGE_Strept_MM1_NC_003050: putative holin 1; SPAR71_1590; phage(gi15088791) 2e-71 Click
6complement(1465457..1465720) PHAGE_Strept_MM1_NC_003050: hypothetical protein MM1p50; SPAR71_1591; phage(gi15088790) 8e-43 Click
7complement(1465780..1467147) PHAGE_Strept_MM1_NC_003050: hypothetical protein MM1p49; SPAR71_1592; phage(gi15088789) 0.0 Click
8complement(1467171..1467857) PHAGE_Strept_MM1_NC_003050: hypothetical protein MM1p49; SPAR71_1593; phage(gi15088789) 1e-127 Click
9complement(1467868..1469742) PHAGE_Strept_MM1_NC_003050: putative anti-receptor protein; SPAR71_1594; phage(gi15088788) 0.0 Click
101469773..1470030 PHAGE_Strept_MM1_NC_003050: integrase; SPAR71_1595; phage(gi15088744) 2e-35 Click
111470044..1470055 attR    TTGCCCCTTTTT 0.0 Click