Escherichia coli XH140A , whole genome shotgun sequence. [asmbl_id: NC_000000].4411216, GC%: 50.80%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 25 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1709004..709016 attL    GAAGCCCTGCCTG 0.0 Click
2709366..710607 PHAGE_Entero_P4: integrase; IAE_03377; phage(gi9627511) 1e-65 Click
3complement(710851..711807) hypothetical protein; IAE_03382 0.0 Click
4711851..712063 PHAGE_Entero_P4: transcriptional regulator; DNA-binding; phage transcriptional activator; IAE_03387(gi9627517) 9e-05 Click
5712192..713601 PHAGE_Entero_TLS: YfiJ; IAE_03392; phage(gi148734544) 1e-06 Click
6713754..714380 hypothetical protein; IAE_03397 0.0 Click
7complement(714558..716747) hypothetical protein; IAE_03402 0.0 Click
8complement(716744..718360) hypothetical protein; IAE_03407 0.0 Click
9complement(718720..718983) hypothetical protein; IAE_03412 0.0 Click
10719125..720198 CP4-57 prophage; RNase LS; IAE_03417 0.0 Click
11720191..720562 hypothetical protein; IAE_03422 0.0 Click
12721043..721783 CP4-57 prophage; putative GTP-binding protein; IAE_03427 0.0 Click
13721875..722696 PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; IAE_03432; phage(gi414086954) 6e-45 Click
14722913..723614 CP4-57 prophage; putative DNA-binding transcriptional regulator; IAE_03437 0.0 Click
15723655..723891 hypothetical protein; IAE_03442 0.0 Click
16723891..724334 hypothetical protein; IAE_03447 0.0 Click
17724358..724825 hypothetical protein; IAE_03452 0.0 Click
18complement(725050..725364) CP4-57 prophage; protein; IAE_03457 0.0 Click
19complement(725377..725970) CP4-57 prophage; inner membrane protein; IAE_03462 0.0 Click
20complement(726046..726246) hypothetical protein; IAE_03467 0.0 Click
21726528..728231 CP4-57 prophage; putative inner membrane protein; IAE_03472 0.0 Click
22729129..729587 PHAGE_Pseudo_YuA: hypothetical protein; putative; phage antirestriction protein; IAE_03477(gi162135127) 4e-15 Click
23729599..730078 CP4-57 prophage; putative DNA repair protein; IAE_03482 0.0 Click
24730087..730287 hypothetical protein; IAE_03487 0.0 Click
25730325..730642 CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system; IAE_03492 0.0 Click
26730663..730992 CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system; IAE_03497 0.0 Click
27730698..730710 attR    GAAGCCCTGCCTG 0.0 Click

Region 2, total : 14 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11950181..1950192 attL    CCTGCAATTAGC 0.0 Click
2complement(1950893..1951165) PHAGE_Entero_SfV: hypothetical protein SfVp30; IAE_09362; phage(gi19549017) 3e-44 Click
3complement(1951293..1952117) PHAGE_Entero_SfV: hypothetical protein SfVp31; IAE_09367; phage(gi19549018) 3e-151 Click
4complement(1952183..1952545) PHAGE_Entero_SfV: hypothetical protein SfVp32; IAE_09372; phage(gi19549019) 6e-63 Click
5complement(1952592..1952759) hypothetical protein; IAE_09377 0.0 Click
61952903..1953271 PHAGE_Entero_HK140: DNA replication protein O; IAE_09382; phage(gi428781991) 3e-14 Click
71953268..1953762 PHAGE_Entero_SfV: hypothetical protein SfVp40; IAE_09387; phage(gi19549027) 2e-87 Click
81953762..1954037 PHAGE_Entero_SfV: DNA adenine methylase; methyltransferase;; phage IAE_09392(gi19549028) 2e-50 Click
91954012..1954605 PHAGE_Entero_SfV: hypothetical protein SfVp21; IAE_09397; phage(gi19548989) 2e-51 Click
101954632..1955072 PHAGE_Entero_mEp213: tail fiber assembly protein; IAE_09402; phage(gi428782612) 2e-26 Click
11complement(1955044..1955346) PHAGE_Entero_HK106: tail fiber assembly protein; IAE_09407; phage(gi428783304) 2e-46 Click
12complement(1955687..1957018) CPS-53 (KpLE1) prophage; putative inner membrane protein; IAE_09412 0.0 Click
13complement(1957015..1957935) PHAGE_Entero_SfV: bactoprenol glucosyltransferase; bactoprenol; phage glucosyl transferase; IAE_09417(gi19549012) 6e-163 Click
14complement(1957932..1958294) PHAGE_Entero_SfV: putative flippase; IAE_09422; phage(gi19549013) 1e-58 Click
15complement(1958447..1959604) PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; putative; phage prophage CPS-53 integrase; IAE_09427(gi16130281) 0.0 Click
161959789..1959800 attR    CCTGCAATTAGC 0.0 Click

Region 3, total : 10 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12908342..2908355 attL    AACATGATGCCGAC 0.0 Click
22918568..2919518 PHAGE_Microm_MpV1: hypothetical protein; IAE_13935; phage(gi313768237) 2e-38 Click
32919515..2920528 PHAGE_Microm_MpV1: hypothetical protein; IAE_13940; phage(gi313768235) 2e-45 Click
42921005..2922216 putative 3-hydroxyphenylpropionic transporter MhpT; IAE_13945 0.0 Click
52922347..2923309 PHAGE_Entero_HK629: tail fiber; IAE_13952; phage(gi428782035) 2e-89 Click
62923309..2923884 PHAGE_Entero_HK629: tail fiber assembly protein; putative; phage tail fibre assembly protein; IAE_13957(gi428782036) 2e-102 Click
7complement(2923982..2924572) PHAGE_Escher_D108: G region invertase; putative; phage site-specific recombinase; IAE_13962(gi281199698) 5e-25 Click
8complement(2924889..2925155) putative DNA-binding transcriptional regulator; IAE_13967 0.0 Click
92925909..2927192 PHAGE_Burkho_phi1026b: gp59; IAE_13972; phage(gi38707949) 1e-33 Click
102927281..2928741 PHAGE_Microm_MpV1: hypothetical protein; IAE_13977; phage(gi313768442) 1e-40 Click
11complement(2928776..2928979) PHAGE_Salmon_SSU5: putative selenium-binding protein YdfZ; IAE_13982; phage(gi410491512) 1e-13 Click
122941006..2941019 attR    AACATGATGCCGAC 0.0 Click

Region 4, total : 28 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
14299548..4299559 attL    ATGTTATTTATC 0.0 Click
24313318..4314718 PHAGE_Bacill_SP10: levanase; IAE_20663; phage(gi418489513) 3e-15 Click
34314748..4315752 sucrose operon repressor; IAE_20668 0.0 Click
4complement(4316050..4316306) PHAGE_Entero_2008: antitermination protein Q; IAE_20673; phage(gi209427762) 5e-41 Click
5complement(4316529..4316891) PHAGE_Entero_mEp237: Holliday junction resolvase RusA; IAE_20678; phage(gi435439318) 5e-62 Click
6complement(4316888..4317178) PHAGE_Entero_mEp237: hypothetical protein; IAE_20683; phage(gi435439317) 8e-49 Click
7complement(4317341..4317796) PHAGE_Cronob_phiES15: hypothetical protein; IAE_20688; phage(gi401817579) 6e-61 Click
8complement(4318011..4318808) putative DNA-binding transcriptional regulator; IAE_20693 0.0 Click
9complement(4318818..4319369) putative kinase inhibitor; IAE_20698 0.0 Click
10complement(4319834..4321360) PHAGE_Bacill_WBeta: putative site-specific recombinase; predicted; phage recombinase; IAE_20703(gi85701406) 5e-09 Click
11complement(4321615..4321947) PHAGE_Acinet_Acj61: putative quaternary ammonium compound-resistance protein qacE; IAE_20708; phage(gi311992758) 1e-10 Click
12complement(4322015..4322253) PHAGE_Entero_lambda: ren exclusion protein; IAE_20713; phage(gi9626297) 2e-26 Click
13complement(4322823..4323029) PHAGE_Entero_lambda: hypothetical protein lambdap79; IAE_20718; phage(gi19263397) 1e-32 Click
144323315..4323725 PHAGE_Entero_lambda: putative envelope protein; IAE_20723; phage(gi19263396) 7e-75 Click
154324016..4324309 PHAGE_Escher_TL_2011c: Bor protein precursor; IAE_20728; phage(gi418487071) 2e-49 Click
16complement(4324341..4324802) PHAGE_Entero_lambda: cell lysis protein; IAE_20733; phage(gi9626310) 2e-79 Click
17complement(4324799..4325296) PHAGE_Entero_cdtI: lysin; IAE_20738; phage(gi148609440) 3e-92 Click
18complement(4325296..4325511) PHAGE_Stx2_c_II: holin; IAE_20743; phage(gi302393164) 1e-28 Click
194326024..4327145 outer membrane porin; DLP12 prophage; IAE_20748 0.0 Click
204327647..4328057 PHAGE_Entero_lambda: putative envelope protein; IAE_20753; phage(gi19263396) 2e-60 Click
21complement(4328209..4328382) hypothetical protein; IAE_20758 0.0 Click
22complement(4329055..4329267) PHAGE_Lactoc_bIL312: Csp; IAE_20763; phage(gi13095918) 1e-15 Click
23complement(4329630..4330127) PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; IAE_20768; phage(gi16765210) 2e-53 Click
24complement(4330124..4330657) PHAGE_Entero_mEp460: endolysin; IAE_20773; phage(gi428782372) 2e-97 Click
25complement(4330654..4330965) PHAGE_Entero_mEp460: hypothetical protein; IAE_20778; phage(gi428782371) 1e-29 Click
26complement(4330970..4331185) PHAGE_Stx2_c_II: holin; IAE_20783; phage(gi302393164) 1e-27 Click
274331218..4331337 hypothetical protein; IAE_20788 0.0 Click
28complement(4331913..4332182) glutamate decarboxylase B, PLP-dependent; IAE_20793 0.0 Click
294332281..4332292 attR    ATGTTATTTATC 0.0 Click
30complement(4332544..4335327) PHAGE_Acanth_moumouvirus: putative Zn-dependent peptidase; IAE_20798; phage(gi441432193) 6e-20 Click