Staphylococcus epidermidis VCU028 , whole genome shotgun [asmbl_id: NC_000000].2449850, GC%: 32.04%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 19 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(252..1385) PHAGE_Staphy_phiETA3: amidase; SEVCU028_1027; phage(gi122891851) 0.0 Click
21386..2388 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_1022; phage(gi399529138) 0.0 Click
31896..1907 attL    AAATAATAATGG 0.0 Click
42393..2731 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_1023; phage(gi399529139) 7e-61 Click
52733..2873 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; SEVCU028_1024; phage(gi399528916) 1e-21 Click
62910..3209 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_1025; phage(gi399529140) 3e-51 Click
73348..4310 PHAGE_Staphy_vB_SepiS_phiIPLA7: amidase; SEVCU028_1026; phage(gi399529141) 0.0 Click
84385..5023 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0954; phage(gi399529135) 2e-116 Click
95024..5593 Cna protein B-type domain protein; SEVCU028_0179 0.0 Click
10complement(5594..6123) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_1001; phage(gi399529138) 7e-97 Click
116208..6367 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0945; phage(gi399529133) 7e-24 Click
126370..9415 PHAGE_Staphy_vB_SepiS_phiIPLA7: tail tape measure protein; SEVCU028_0946; phage(gi399529134) 0.0 Click
13complement(9416..9553) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0004; phage(gi399529155) 8e-20 Click
14complement(9608..9784) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0005; phage(gi399529154) 4e-24 Click
15complement(9850..10059) PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; SEVCU028_0006; phage(gi399528932) 4e-34 Click
16complement(10072..10788) PHAGE_Staphy_StB20: transcription antirepressor; SEVCU028_0007; phage(gi431809735) 5e-90 Click
17complement(10802..11017) PHAGE_Staphy_X2: ORF032; SEVCU028_0008; phage(gi66394701) 4e-26 Click
1811214..11825 PHAGE_Staphy_phi2958PVL: probable transcriptional repressor; SEVCU028_0009; phage(gi209363558) 2e-71 Click
1911881..12825 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0010; phage(gi399529148) 5e-59 Click
2012627..12638 attR    AAATAATAATGG 0.0 Click
2112889..13938 PHAGE_Staphy_vB_SepiS_phiIPLA5: integrase; SEVCU028_0011; phage(gi399528924) 0.0 Click

Region 2, total : 20 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(856068..856307) PHAGE_Staphy_StB20: single-strand DNA binding protein; SEVCU028_0997; phage(gi431809742) 9e-40 Click
2complement(856307..856978) PHAGE_Staphy_StB20: ERF-like recombinase; SEVCU028_0998; phage(gi431809741) 2e-101 Click
3complement(856971..857198) PHAGE_Staphy_StB20: hypothetical protein; SEVCU028_0999; phage(gi431809740) 2e-31 Click
4complement(857318..857482) PHAGE_Staphy_phiPV83: transposase; SEVCU028_0335; phage(gi9635722) 2e-09 Click
5complement(857963..858499) PHAGE_Bacill_SPBc2: putative DNase/RNase endonuclease; SEVCU028_0336; phage(gi9630131) 9e-26 Click
6858664..858852 hypothetical protein; SEVCU028_0337 0.0 Click
7complement(859021..859623) response regulator receiver domain protein; SEVCU028_0338 0.0 Click
8complement(859620..860714) histidine kinase; SEVCU028_0339 0.0 Click
9complement(860714..861445) ABC-2 type transporter; SEVCU028_0340 0.0 Click
10complement(861448..862128) PHAGE_Amsact_: putative ATP-binding cassette transporter; SEVCU028_0341; phage(gi9964444) 5e-12 Click
11complement(862496..863968) PHAGE_Monkey_16: C19L; SEVCU028_0342; phage(gi17974958) 2e-05 Click
12complement(864026..864223) hypothetical protein; SEVCU028_0343 0.0 Click
13864537..865562 Beta-eliminating lyase; SEVCU028_0344 0.0 Click
14865632..866315 PHAGE_Lactob_Lj965: putative superinfection immunity protein; SEVCU028_0345; phage(gi41179219) 2e-23 Click
15complement(866566..866949) PHAGE_Staphy_StB27: scaffold protein; SEVCU028_0346; phage(gi431809709) 2e-27 Click
16complement(866946..867113) PHAGE_Staphy_StB27: scaffold protein; SEVCU028_0347; phage(gi431809709) 9e-06 Click
17complement(867274..867468) hypothetical protein; SEVCU028_0348 0.0 Click
18complement(867470..867823) PHAGE_Clostr_phiC2: putative head morphogenesis protein; SEVCU028_0349; phage(gi134287339) 2e-09 Click
19complement(867866..868513) PHAGE_Staphy_StB27: minor head protein; SEVCU028_0350; phage(gi431809708) 2e-64 Click
20complement(868777..870117) PHAGE_Megavi_lba: putative glutamine synthetase; SEVCU028_0351; phage(gi448825676) 7e-12 Click

Region 3, total : 44 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11310025..1310463 PHAGE_Staphy_vB_SepiS_phiIPLA7: amidase; SEVCU028_1121; phage(gi399529141) 4e-80 Click
21310542..1310811 PHAGE_Staphy_vB_SepiS_phiIPLA7: holin; SEVCU028_1122; phage(gi399529144) 2e-40 Click
31310811..1311080 PHAGE_Staphy_71: ORF007; SEVCU028_1123; phage(gi66396047) 2e-40 Click
4complement(1311081..1311179) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0955; phage(gi399529132) 5e-11 Click
5complement(1311238..1311777) PHAGE_Staphy_vB_SepiS_phiIPLA7: major tail protein; SEVCU028_0956; phage(gi399529131) 4e-100 Click
6complement(1311764..1312201) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0957; phage(gi399529130) 2e-78 Click
7complement(1312214..1312627) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0958; phage(gi399529129) 8e-79 Click
8complement(1312620..1312949) PHAGE_Staphy_vB_SepiS_phiIPLA7: head tail adaptor; SEVCU028_0959; phage(gi399529128) 8e-60 Click
9complement(1312942..1313256) PHAGE_Staphy_vB_SepiS_phiIPLA7: head protein; SEVCU028_0960; phage(gi399529127) 2e-56 Click
10complement(1313256..1313546) PHAGE_Staphy_vB_SepiS_phiIPLA7: rho termination protein; SEVCU028_0961; phage(gi399529126) 3e-49 Click
11complement(1313563..1314393) PHAGE_Staphy_vB_SepiS_phiIPLA7: major head protein; SEVCU028_0962; phage(gi399529125) 2e-152 Click
12complement(1314411..1315007) PHAGE_Staphy_PH15: putative phage minor capsid protein; SEVCU028_0963; phage(gi119967838) 1e-103 Click
13complement(1315121..1315327) PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; SEVCU028_0964; phage(gi399528899) 1e-26 Click
14complement(1315435..1316388) PHAGE_Staphy_vB_SepiS_phiIPLA7: minor head protein; SEVCU028_0965; phage(gi399529123) 2e-173 Click
15complement(1316345..1317781) PHAGE_Staphy_vB_SepiS_phiIPLA7: portal protein; SEVCU028_0966; phage(gi399529122) 0.0 Click
16complement(1317787..1319049) PHAGE_Staphy_vB_SepiS_phiIPLA7: terminase large subunit; SEVCU028_0967; phage(gi399529121) 0.0 Click
17complement(1319036..1319470) PHAGE_Staphy_PH15: putative small terminase subunit; SEVCU028_0968; phage(gi119967834) 7e-77 Click
18complement(1319924..1320340) PHAGE_Staphy_vB_SepiS_phiIPLA7: RinA; SEVCU028_0969; phage(gi399529178) 2e-77 Click
19complement(1320358..1320576) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0970; phage(gi399529177) 5e-36 Click
20complement(1320580..1320720) PHAGE_Staphy_PH15: hypothetical protein ph66; SEVCU028_0971; phage(gi119967898) 1e-19 Click
21complement(1320708..1321106) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0972; phage(gi399529176) 5e-37 Click
22complement(1321108..1321278) PHAGE_Staphy_vB_SepiS_phiIPLA7: RinB; SEVCU028_0973; phage(gi399529175) 3e-27 Click
23complement(1321284..1321481) PHAGE_Staphy_2638A: ORF040; SEVCU028_0974; phage(gi66395484) 8e-06 Click
24complement(1321497..1321700) hypothetical protein; SEVCU028_0975 0.0 Click
25complement(1321740..1322267) PHAGE_Staphy_TEM123: dUTPase; SEVCU028_0976; phage(gi388570353) 1e-56 Click
26complement(1322260..1322439) PHAGE_Staphy_PH15: hypothetical protein ph61; SEVCU028_0977; phage(gi119967893) 1e-27 Click
27complement(1322429..1322677) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0978; phage(gi399529172) 9e-40 Click
28complement(1322667..1322966) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0979; phage(gi399529171) 1e-08 Click
29complement(1322969..1323250) PHAGE_Staphy_vB_SepiS_phiIPLA5: nuclease; SEVCU028_0980; phage(gi399528953) 3e-47 Click
30complement(1323326..1323724) PHAGE_Staphy_3A: ORF026; SEVCU028_0981; phage(gi66395614) 2e-15 Click
31complement(1323743..1323922) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0982; phage(gi399529169) 1e-25 Click
32complement(1324103..1324783) PHAGE_Staphy_vB_SepiS_phiIPLA7: endonuclease; SEVCU028_0983; phage(gi399529168) 8e-130 Click
33complement(1324786..1325220) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0984; phage(gi399529167) 1e-46 Click
34complement(1325217..1325576) PHAGE_Staphy_CNPH82: hypothetical protein cn53; SEVCU028_0985; phage(gi119953731) 1e-63 Click
35complement(1325577..1325768) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0986; phage(gi399529165) 2e-26 Click
36complement(1325768..1326190) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0987; phage(gi399529170) 3e-10 Click
37complement(1326177..1326593) PHAGE_Staphy_CNPH82: hypothetical protein cn50; SEVCU028_0988; phage(gi119953728) 3e-70 Click
38complement(1326603..1326848) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0989; phage(gi399529163) 3e-41 Click
39complement(1326826..1327047) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0990; phage(gi399529162) 1e-37 Click
40complement(1327044..1328279) PHAGE_Staphy_vB_SepiS_phiIPLA7: DNA helicase; SEVCU028_0991; phage(gi399529161) 0.0 Click
41complement(1328272..1328631) PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_0992; phage(gi399529160) 2e-66 Click
42complement(1328631..1329296) PHAGE_Staphy_vB_SepiS_phiIPLA7: replication protein; SEVCU028_0993; phage(gi399529159) 7e-123 Click
431329368..1329493 hypothetical protein; SEVCU028_1270 0.0 Click
44complement(1329574..1330842) PHAGE_Lactoc_P087: putative cysteine synthase; SEVCU028_1271; phage(gi229605000) 8e-08 Click

Region 4, total : 19 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11595300..1595313 attL    AGTCGTTTAATTTC 0.0 Click
2complement(1599679..1600677) PHAGE_Parame_1: hypothetical protein; SEVCU028_1703; phage(gi9631622) 5e-39 Click
3complement(1600690..1601850) putative LL-diaminopimelate aminotransferase; SEVCU028_1704 0.0 Click
4complement(1602177..1602576) PHAGE_Staphy_vB_SauM_Romulus: tail lysin; SEVCU028_1705; phage(gi472437801) 3e-11 Click
5complement(1602577..1603954) PHAGE_Staphy_phiPVL108: putative transposase; SEVCU028_1108; phage(gi119443708) 0.0 Click
6complement(1604731..1605864) PHAGE_Staphy_PH15: phage amidase; SEVCU028_1105; phage(gi119967860) 6e-105 Click
7complement(1605865..1606002) PHAGE_Staphy_PH15: hypothetical protein ph44; SEVCU028_0012; phage(gi119967876) 1e-20 Click
81606372..1606578 PHAGE_Staphy_PH15: hypothetical protein ph41; SEVCU028_0013; phage(gi119967873) 5e-32 Click
9complement(1606564..1606728) PHAGE_Staphy_PH15: hypothetical protein ph40; SEVCU028_0014; phage(gi119967872) 2e-20 Click
10complement(1606731..1607504) PHAGE_Staphy_PH15: putative antirepressor; SEVCU028_0015; phage(gi119967871) 5e-125 Click
11complement(1607518..1607754) PHAGE_Staphy_phiMR11: putative transcriptional regulator protein; SEVCU028_0016; phage(gi162290112) 1e-36 Click
121607908..1608222 PHAGE_Staphy_phiSLT: repressor; SEVCU028_0017; phage(gi12719398) 2e-52 Click
131608234..1608695 PHAGE_Staphy_PH15: conserved phage protein; SEVCU028_0018; phage(gi119967866) 7e-84 Click
141608714..1609190 PHAGE_Staphy_PH15: hypothetical protein ph33; SEVCU028_0019; phage(gi119967865) 3e-83 Click
151609192..1609674 PHAGE_Staphy_PH15: hypothetical protein ph32; SEVCU028_0020; phage(gi119967864) 2e-88 Click
161609727..1610995 PHAGE_Staphy_PH15: putative site-specific recombinase; SEVCU028_0021; phage(gi119967863) 0.0 Click
17complement(1611682..1612134) peroxide-responsive repressor PerR; SEVCU028_1706 0.0 Click
18complement(1612230..1613180) PHAGE_Parame_1: hypothetical protein; SEVCU028_1707; phage(gi9631622) 3e-10 Click
19complement(1613183..1613641) antioxidant, AhpC/TSA family; SEVCU028_1708 0.0 Click
201613722..1615011 PHAGE_Mycoba_Myrna: gp183; SEVCU028_1709; phage(gi203454746) 7e-07 Click
211625335..1625348 attR    AGTCGTTTAATTTC 0.0 Click

Region 5, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11724635..1724647 attL    TATAAGGAGATTA 0.0 Click
2complement(1735143..1735760) PHAGE_Lactob_LP65: hypothetical protein LP65_gp067; SEVCU028_0330; phage(gi56693115) 5e-13 Click
31735827..1736333 PHAGE_Sphing_PAU: gp37; SEVCU028_0331; phage(gi435844540) 1e-04 Click
41736501..1737379 Cof-like hydrolase; SEVCU028_0332 0.0 Click
51737384..1737950 FMN-dependent NADPH-azoreductase; SEVCU028_0333 0.0 Click
61738514..1741105 PHAGE_Megavi_chiliensis: hypothetical protein; SEVCU028_0334; phage(gi363540066) 4e-20 Click
71742803..1743241 PHAGE_Staphy_vB_SepiS_phiIPLA7: amidase; SEVCU028_1116; phage(gi399529141) 7e-80 Click
81743294..1743803 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_1117; phage(gi399529142) 4e-93 Click
91743803..1744330 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; SEVCU028_1118; phage(gi399529143) 1e-98 Click
101744386..1744655 PHAGE_Staphy_vB_SepiS_phiIPLA7: holin; SEVCU028_1119; phage(gi399529144) 3e-40 Click
111744655..1744924 PHAGE_Staphy_71: ORF007; SEVCU028_1120; phage(gi66396047) 3e-40 Click
12complement(1744925..1745098) PROPHAGE_Brucel_1330: transposase, putative; SEVCU028_0584; phage(gi23502708) 3e-09 Click
131745914..1746657 PHAGE_Staphy_JD007: glycerophosphoryl diester phosphodiesterase; SEVCU028_0585; phage(gi428783010) 3e-14 Click
141746754..1747182 MaoC-like protein; SEVCU028_0586 0.0 Click
15complement(1747228..1749234) putative penicillin-binding protein 3; SEVCU028_0587 0.0 Click
161749334..1750320 peptidase, M56 family; SEVCU028_0588 0.0 Click
171750283..1750552 hypothetical protein; SEVCU028_0589 0.0 Click
18complement(1750543..1752066) PHAGE_Staphy_phiPVL108: putative transposase; SEVCU028_0590; phage(gi119443708) 0.0 Click
19complement(1752202..1752711) hypothetical protein; SEVCU028_0591 0.0 Click
20complement(1752723..1753034) hypothetical protein; SEVCU028_0592 0.0 Click
21complement(1753121..1753471) hypothetical protein; SEVCU028_0593 0.0 Click
22complement(1753993..1755621) PHAGE_Strept_phiNJ2: putative recombinase; SEVCU028_0594; phage(gi414090258) 1e-50 Click
23complement(1755643..1756992) PHAGE_Bacill_phi105: site-specific recombinase for integration and excision; SEVCU028_0595; phage(gi22855025) 1e-26 Click
241762502..1762514 attR    TATAAGGAGATTA 0.0 Click

Region 6, total : 29 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12271107..2271122 attL    ATAAAAAATATTAAAT 0.0 Click
2complement(2279216..2280142) PHAGE_Clostr_phiCTP1: putative DNA polymerase III; SEVCU028_1265; phage(gi304360727) 9e-11 Click
3complement(2280448..2280777) hypothetical protein; SEVCU028_1266 0.0 Click
4complement(2280811..2281422) PHAGE_Pseudo_EL: putative thymidylate kinase; SEVCU028_1267; phage(gi82701134) 8e-27 Click
5complement(2281426..2282763) Orn/Lys/Arg decarboxylase, major domain protein; SEVCU028_1268 0.0 Click
6complement(2282792..2283325) PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p012; SEVCU028_1269; phage(gi9630137) 2e-08 Click
72283758..2284239 PHAGE_Staphy_PH15: hydrolase; SEVCU028_1106; phage(gi119967856) 2e-89 Click
8complement(2284412..2284750) PHAGE_Staphy_IPLA88: integrase; SEVCU028_1124; phage(gi215401172) 2e-48 Click
9complement(2284880..2285476) PHAGE_Staphy_IPLA88: integrase; SEVCU028_1125; phage(gi215401172) 3e-92 Click
10complement(2285531..2285866) PHAGE_Staphy_phiETA: hypothetical protein phiETA_02; SEVCU028_1126; phage(gi17426230) 1e-35 Click
11complement(2285868..2286383) hypothetical protein; SEVCU028_1127 0.0 Click
12complement(2286452..2286646) hypothetical protein; SEVCU028_1128 0.0 Click
13complement(2286719..2287162) PHAGE_Staphy_PH15: hypothetical protein ph32; SEVCU028_1129; phage(gi119967864) 6e-15 Click
14complement(2287164..2287682) PHAGE_Staphy_TEM123: hypothetical protein; SEVCU028_1130; phage(gi388570323) 4e-18 Click
15complement(2287698..2288159) PHAGE_Staphy_PH15: conserved phage protein; SEVCU028_1131; phage(gi119967866) 3e-82 Click
16complement(2288171..2288500) PHAGE_Staphy_PH15: putative cI-like repressor; SEVCU028_1132; phage(gi119967867) 1e-24 Click
172288694..2288948 PHAGE_Lactob_A2: Cro protein; SEVCU028_1133; phage(gi22296546) 2e-20 Click
182289354..2290118 PHAGE_Staphy_PH15: putative antirepressor; SEVCU028_1134; phage(gi119967871) 7e-90 Click
192290348..2290482 PHAGE_Staphy_PH15: hypothetical protein ph40; SEVCU028_1135; phage(gi119967872) 9e-05 Click
20complement(2290465..2290788) PHAGE_Lactob_Sha1: RNA polymerase III; SEVCU028_1137; phage(gi418489835) 2e-07 Click
212290775..2290945 PHAGE_Staphy_PH15: hypothetical protein ph42; SEVCU028_1136; phage(gi119967874) 1e-10 Click
222291154..2291408 PHAGE_Staphy_StB27: exonuclease; SEVCU028_1138; phage(gi431809689) 2e-30 Click
23complement(2291789..2291986) hypothetical protein; SEVCU028_1139 0.0 Click
24complement(2292222..2292752) acetyltransferase, GNAT family; SEVCU028_1140 0.0 Click
25complement(2293040..2293174) PHAGE_Staphy_PH15: hypothetical protein ph49; SEVCU028_0949; phage(gi119967881) 8e-20 Click
26complement(2293152..2293841) PHAGE_Staphy_PH15: conserved phage protein; SEVCU028_0950; phage(gi119967880) 3e-128 Click
27complement(2293855..2294028) PHAGE_Staphy_vB_SepiS_phiIPLA5: single stranded DNA binding protein; SEVCU028_0951; phage(gi399528936) 1e-20 Click
282294496..2295260 Cof-like hydrolase; SEVCU028_1927 0.0 Click
292295325..2296335 ABC transporter, substrate-binding protein; SEVCU028_1928 0.0 Click
30complement(2296468..2297166) PHAGE_Amsact_: putative ATP-binding cassette transporter; SEVCU028_1929; phage(gi9964444) 3e-14 Click
312299783..2299798 attR    ATAAAAAATATTAAAT 0.0 Click