Peptoniphilus duerdenii ATCC BAA-1640 , whole genome [asmbl_id: NC_000000].2081526, GC%: 34.24%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1465086..465097 attL    AAAATAAAAATG 0.0 Click
2465211..466884 PHAGE_Geobac_virus_E2: putative recombinase; HMPREF9225_0449; phage(gi148747753) 4e-38 Click
3467130..467333 conserved hypothetical protein; HMPREF9225_0450 0.0 Click
4467377..468399 PHAGE_Parame_bursaria_Chlorella_virus_NY2A: hypothetical protein NY2A_B010R; HMPREF9225_0451; phage(gi157952314) 2e-16 Click
5complement(468408..469334) conserved hypothetical protein; HMPREF9225_0452 0.0 Click
6complement(469356..469613) PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; HMPREF9225_0453; phage(gi397912660) 5e-05 Click
7complement(469576..471393) PHAGE_Campyl_CPX: recombination endonuclease; HMPREF9225_0454; phage(gi371670970) 6e-10 Click
8complement(471400..471843) conserved hypothetical protein; HMPREF9225_0455 0.0 Click
9complement(471847..472806) possible phage-associated protein; HMPREF9225_0456 0.0 Click
10473187..473723 sigma-70 family RNA polymerase sigma factor; HMPREF9225_0457 0.0 Click
11473738..473872 conserved hypothetical protein; HMPREF9225_0458 0.0 Click
12473969..474265 conserved hypothetical protein; HMPREF9225_0459 0.0 Click
13474265..475377 PHAGE_Staphy_phi7401PVL: hypothetical protein; HMPREF9225_0460; phage(gi448244653) 2e-69 Click
14475349..475930 PHAGE_Staphy_phi7401PVL: hypothetical protein; HMPREF9225_0461; phage(gi448244654) 1e-51 Click
15475942..476139 conserved hypothetical protein; HMPREF9225_0462 0.0 Click
16476136..478067 PHAGE_Staphy_phi7401PVL: phage encoded DNA polymerase I; HMPREF9225_0463; phage(gi448244655) 0.0 Click
17478033..478866 PHAGE_Staphy_47: ORF017; HMPREF9225_0464; phage(gi66395673) 1e-56 Click
18478866..479252 conserved hypothetical protein; HMPREF9225_0465 0.0 Click
19479253..481481 PHAGE_Lactob_A2: putative primase; HMPREF9225_0466; phage(gi22296557) 1e-55 Click
20481618..481899 PHAGE_Staphy_phi7401PVL: hypothetical protein; HMPREF9225_0467; phage(gi448244659) 3e-17 Click
21481900..483246 PHAGE_Staphy_phi7401PVL: helicase; HMPREF9225_0468; phage(gi448244660) 5e-124 Click
22483340..483768 conserved hypothetical protein; HMPREF9225_0469 0.0 Click
23483868..484236 PHAGE_Burkho_phiE125: putative class I holin; HMPREF9225_0470; phage(gi17975232) 8e-15 Click
24493781..493792 attR    AAAATAAAAATG 0.0 Click

Region 2, total : 20 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1486100..487335 PHAGE_Strept_EJ_1: transferase; HMPREF9225_0474; phage(gi39653711) 5e-75 Click
2487379..487594 conserved hypothetical protein; HMPREF9225_0475 0.0 Click
3487637..488035 hypothetical protein; HMPREF9225_0476 0.0 Click
4488096..488416 conserved hypothetical protein; HMPREF9225_0477 0.0 Click
5488508..490097 PHAGE_Nocard_NBR1: terminase large subunit; HMPREF9225_0478; phage(gi372217589) 1e-87 Click
6490232..491350 PHAGE_Burkho_phiE125: putative portal protein; HMPREF9225_0479; phage(gi17975165) 9e-72 Click
7491337..491462 conserved hypothetical protein; HMPREF9225_0480 0.0 Click
8491561..492268 PHAGE_Geobac_virus_E2: putative Clp peptidase; HMPREF9225_0481; phage(gi148747731) 6e-46 Click
9492271..493461 PHAGE_Salmon_ST64B: Major capsid protein precursor; HMPREF9225_0482; phage(gi23505451) 3e-39 Click
10493472..493744 PHAGE_Bacill_phIS3501: phage DNA packaging protein; HMPREF9225_0483; phage(gi422934332) 2e-05 Click
11493744..494076 conserved hypothetical protein; HMPREF9225_0484 0.0 Click
12494073..494453 PHAGE_Bacill_virus_1: hypothetical protein BV1_gp26; HMPREF9225_0485; phage(gi155042941) 1e-13 Click
13494446..494772 PHAGE_Bacill_virus_1: Putative aminopeptidase; HMPREF9225_0486; phage(gi155042942) 4e-21 Click
14494765..495361 PHAGE_Bacill_virus_1: hypothetical protein BV1_gp28; HMPREF9225_0487; phage(gi155042943) 2e-40 Click
15495364..495720 PHAGE_Bacill_virus_1: hypothetical protein BV1_gp29; HMPREF9225_0488; phage(gi155042944) 2e-12 Click
16495738..495902 conserved hypothetical protein; HMPREF9225_0489 0.0 Click
17495964..496830 AraC family transcriptional activator; HMPREF9225_0490 0.0 Click
18496903..499968 PHAGE_Geobac_virus_E2: putative tail tape measure protein; HMPREF9225_0491; phage(gi148747742) 4e-148 Click
19500070..500432 conserved hypothetical protein; HMPREF9225_0492 0.0 Click
20500432..502303 PHAGE_Clostr_vB_CpeS_CP51: hypothetical protein; HMPREF9225_0493; phage(gi509140061) 7e-09 Click

Region 3, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1533395..533406 attL    TTGGATATATAA 0.0 Click
2complement(533549..534508) PHAGE_Entero_BP_4795: putative transposase OrfB protein of IS629; HMPREF9225_0522; phage(gi157166067) 9e-33 Click
3complement(534526..534930) conserved hypothetical protein; HMPREF9225_0523 0.0 Click
4complement(534991..535380) conserved hypothetical protein; HMPREF9225_0524 0.0 Click
5535654..536259 conserved hypothetical protein; HMPREF9225_0525 0.0 Click
6536312..538222 PHAGE_Bacill_SPBc2: ABC transporter; HMPREF9225_0526; phage(gi9630145) 3e-23 Click
7538226..539962 PHAGE_Bacill_SPBc2: ABC transporter; HMPREF9225_0527; phage(gi9630145) 5e-30 Click
8complement(540136..540333) conserved hypothetical protein; HMPREF9225_0528 0.0 Click
9540690..541247 PHAGE_Strept_TP_J34: putative CI repressor homolog; HMPREF9225_0529; phage(gi444475878) 1e-08 Click
10541670..541936 conserved hypothetical protein; HMPREF9225_0530 0.0 Click
11542366..543040 conserved hypothetical protein; HMPREF9225_0531 0.0 Click
12543045..545210 PHAGE_Plankt_PaV_LD: ABC transporter; HMPREF9225_0532; phage(gi371496158) 2e-15 Click
13545229..545810 conserved hypothetical protein; HMPREF9225_0533 0.0 Click
14545820..547541 PHAGE_Bacill_SPBc2: ABC transporter; HMPREF9225_0534; phage(gi9630145) 1e-30 Click
15547556..549286 PHAGE_Bacill_SPBc2: ABC transporter; HMPREF9225_0535; phage(gi9630145) 3e-26 Click
16complement(549422..549685) PHAGE_Staphy_prophage_phiPV83: transposase; HMPREF9225_0536; phage(gi9635740) 3e-20 Click
17complement(549980..550291) PHAGE_Staphy_prophage_phiPV83: transposase; HMPREF9225_0537; phage(gi9635740) 6e-10 Click
18551052..551624 TetR family transcriptional regulator; HMPREF9225_0538 0.0 Click
19551728..553467 PHAGE_Bacill_SPBc2: ABC transporter; HMPREF9225_0539; phage(gi9630145) 3e-30 Click
20553460..555169 PHAGE_Bacill_SPBc2: ABC transporter; HMPREF9225_0540; phage(gi9630145) 3e-29 Click
21555172..555411 ABC superfamily ATP binding cassette transporter, ABC protein; HMPREF9225_0541 0.0 Click
22555455..555745 probable membrane protein; HMPREF9225_0542 0.0 Click
23555811..556809 PHAGE_Strept_pyogenes_315_1: hypothetical protein SpyM3_0691; HMPREF9225_0543; phage(gi28876156) 2e-21 Click
24558197..558208 attR    TTGGATATATAA 0.0 Click

Region 4, total : 8 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11394172..1394183 attL    CTTTATAGATAA 0.0 Click
21401772..1403406 PHAGE_Clostr_phiCD6356: putative phage tail tape measure protein; HMPREF9225_1323; phage(gi326536862) 4e-07 Click
31403480..1403653 bacterial nucleoid DNA-binding protein; HMPREF9225_1324 0.0 Click
41403838..1404365 PHAGE_Sputni_virophage: V12; HMPREF9225_1325; phage(gi195982543) 9e-05 Click
51404797..1405810 PHAGE_Clostr_phiC2: hypothetical protein phiC2p79; HMPREF9225_1326; phage(gi134287411) 9e-07 Click
61405899..1406618 PHAGE_Lactob_LF1: DNA replication protein; HMPREF9225_1327; phage(gi418489431) 8e-35 Click
71406611..1406622 attR    CTTTATAGATAA 0.0 Click
81406776..1406937 recombination protein R; HMPREF9225_1328 0.0 Click
91407010..1408635 PHAGE_Bacill_WBeta: putative site-specific recombinase; HMPREF9225_1329; phage(gi85701406) 1e-26 Click
101408632..1410128 PHAGE_Vibrio_VvAW1: DNA methylase; HMPREF9225_1330; phage(gi460042889) 9e-28 Click

Region 5, total : 83 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(1681252..1683393) PHAGE_Salmon_SSU5: putative guanosine polyphosphate pyrophospho hydrolase/synthetase; HMPREF9225_1599; phage(gi390013934) 4e-12 Click
2complement(1683402..1685138) PHAGE_Bacill_0305phi8_36: RecJ; HMPREF9225_1600; phage(gi156564062) 1e-80 Click
3complement(1685278..1686585) PHAGE_Cassav_brown_streak_virus: polyprotein; HMPREF9225_1601; phage(gi426580888) 8e-14 Click
4complement(1686575..1687921) PHAGE_Deep_s_D6E: lysin; HMPREF9225_1602; phage(gi423262347) 1e-19 Click
5complement(1687899..1688882) PHAGE_Saimir_herpesvirus_2: unnamed protein product; HMPREF9225_1603; phage(gi9626031) 9e-07 Click
6complement(1688879..1690168) PHAGE_Capsic_chlorosis_virus: RNA-dependent RNA polymerase; HMPREF9225_1604; phage(gi113200759) 9e-05 Click
7complement(1690156..1690866) possible prepilin peptidase; HMPREF9225_1605 0.0 Click
8complement(1690863..1691210) PHAGE_Deftia_phiW_14: hypothetical protein; HMPREF9225_1606; phage(gi282599056) 6e-05 Click
9complement(1691224..1692390) possible type II secretion system protein; HMPREF9225_1607 0.0 Click
10complement(1692392..1693816) type II general secretion pathway (GSP) E protein; HMPREF9225_1608 0.0 Click
11complement(1693822..1695885) PHAGE_Megavi_lba: DNA topoisomerase 1; HMPREF9225_1609; phage(gi448825273) 1e-103 Click
12complement(1695894..1696982) PHAGE_Phage_OH2: SMF family protein; HMPREF9225_1610; phage(gi526118339) 7e-26 Click
13complement(1696982..1698502) PROPHAGE_Escher_Sakai: putative ATP-dependent protease; HMPREF9225_1611; phage(gi15833954) 2e-98 Click
14complement(1698511..1698864) possible endonuclease; HMPREF9225_1612 0.0 Click
15complement(1698861..1699472) PHAGE_Cafete_BV_PW1: putative ribonuclease HII; HMPREF9225_1613; phage(gi310831397) 2e-34 Click
16complement(1699465..1700310) ribosome biogenesis GTP-binding protein YlqF; HMPREF9225_1614 0.0 Click
17complement(1700295..1701101) PHAGE_Lactoc_Q54: putative HAD hydrolase; HMPREF9225_1615; phage(gi115304277) 1e-06 Click
18complement(1701435..1702082) Asp/Glu/Hydantoin family racemase; HMPREF9225_1616 0.0 Click
191702224..1703318 GTP-binding protein YchF; HMPREF9225_1617 0.0 Click
201703393..1703469 tRNA 0.0 Click
211703441..1703456 attL    CGTGGGTTCGAATCCC 0.0 Click
22complement(1703667..1703984) conserved hypothetical protein; HMPREF9225_1618 0.0 Click
23complement(1703971..1704357) conserved hypothetical protein; HMPREF9225_1619 0.0 Click
24complement(1704359..1705090) PHAGE_Clostr_c_st: putative N-acetylmuramoyl-L-alanine amidase; HMPREF9225_1620; phage(gi80159841) 1e-22 Click
25complement(1705113..1705436) acetyl-coA carboxylase carboxyl transferase subunit alpha; HMPREF9225_1621 0.0 Click
26complement(1705536..1705772) hypothetical protein; HMPREF9225_1622 0.0 Click
27complement(1705870..1706187) conserved hypothetical protein; HMPREF9225_1623 0.0 Click
28complement(1706196..1706921) PHAGE_Pectob_phiTE: virion structural protein; HMPREF9225_1624; phage(gi448244957) 1e-18 Click
29complement(1706924..1707070) PHAGE_Phage_OH2: hypothetical protein; HMPREF9225_1625; phage(gi526118311) 5e-05 Click
30complement(1707070..1707225) conserved hypothetical protein; HMPREF9225_1626 0.0 Click
31complement(1707225..1707461) phage shock protein A; HMPREF9225_1627 0.0 Click
32complement(1707458..1709161) PHAGE_Clostr_phiMMP04: hypothetical protein; HMPREF9225_1628; phage(gi414090464) 2e-07 Click
33complement(1709161..1710270) PHAGE_Campyl_CP21: radical SAM domain-containing protein; HMPREF9225_1629; phage(gi422935264) 6e-13 Click
34complement(1710270..1710743) conserved hypothetical protein; HMPREF9225_1630 0.0 Click
35complement(1710736..1711080) conserved hypothetical protein; HMPREF9225_1631 0.0 Click
36complement(1711081..1711899) PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; HMPREF9225_1632; phage(gi134287360) 5e-10 Click
37complement(1711892..1712989) PHAGE_Strept_EJ_1: tail protein; HMPREF9225_1633; phage(gi39653735) 7e-53 Click
38complement(1713000..1713434) PHAGE_Phage_OH2: hypothetical protein; HMPREF9225_1634; phage(gi526118316) 7e-16 Click
39complement(1713431..1713883) conserved hypothetical protein; HMPREF9225_1635 0.0 Click
40complement(1713888..1715303) PHAGE_Clostr_phiC2: putative hydrolase; HMPREF9225_1636; phage(gi134287357) 1e-59 Click
41complement(1715293..1715889) PHAGE_Clostr_phiC2: putative LysM; HMPREF9225_1637; phage(gi134287356) 1e-24 Click
42complement(1715882..1717933) PHAGE_Clostr_phiC2: putative tail tape measure protein; HMPREF9225_1638; phage(gi134287355) 4e-75 Click
43complement(1718100..1718507) PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; HMPREF9225_1639; phage(gi134287351) 8e-18 Click
44complement(1718507..1719019) PHAGE_Clostr_phiC2: putative core tail; HMPREF9225_1640; phage(gi134287349) 4e-34 Click
45complement(1719042..1720382) PHAGE_Clostr_phiC2: putative sheath tail protein; HMPREF9225_1641; phage(gi134287348) 8e-103 Click
46complement(1720382..1720555) conserved hypothetical protein; HMPREF9225_1642 0.0 Click
47complement(1720568..1721041) PHAGE_Strept_EJ_1: hypothetical protein EJ-1p51; HMPREF9225_1643; phage(gi39653725) 1e-06 Click
48complement(1721038..1721427) PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; HMPREF9225_1644; phage(gi134287346) 5e-17 Click
49complement(1721429..1721800) PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; HMPREF9225_1645; phage(gi134287345) 5e-12 Click
50complement(1721779..1722204) hypothetical protein; HMPREF9225_1646 0.0 Click
51complement(1722213..1722458) hypothetical protein; HMPREF9225_1647 0.0 Click
52complement(1722470..1723387) PHAGE_Clostr_phi_CD119: putative capsid protein; HMPREF9225_1648; phage(gi90592716) 9e-59 Click
53complement(1723400..1723942) PHAGE_Phage_OH2: methyl-accepting chemotaxis protein scaffolding protein; HMPREF9225_1649; phage(gi526118331) 4e-22 Click
54complement(1724207..1724377) ABC superfamily ATP binding cassette transporter, binding protein; HMPREF9225_1650 0.0 Click
55complement(1724379..1726895) PHAGE_Clostr_phiC2: putative head morphogenesis protein; HMPREF9225_1651; phage(gi134287339) 2e-58 Click
56complement(1726852..1728261) PHAGE_Staphy_SA13: SPP1 family portal protein; HMPREF9225_1652; phage(gi526244909) 5e-43 Click
57complement(1728273..1729439) PHAGE_Phage_OH2: terminase large subunit; HMPREF9225_1653; phage(gi526118335) 1e-153 Click
58complement(1729511..1730065) PHAGE_Staphy_StB27: TerS; HMPREF9225_1654; phage(gi431809705) 5e-30 Click
59complement(1730160..1730561) RNA polymerase sigma factor; HMPREF9225_1655 0.0 Click
60complement(1730565..1730768) nitrite reductase; HMPREF9225_1656 0.0 Click
61complement(1730778..1731119) PHAGE_Lister_A500: gp58; HMPREF9225_1657; phage(gi157325017) 2e-16 Click
62complement(1731100..1731675) conserved hypothetical protein; HMPREF9225_1658 0.0 Click
63complement(1731672..1732556) PHAGE_Entero_phiFL1A: recombinase; HMPREF9225_1659; phage(gi281416341) 2e-25 Click
64complement(1732607..1733461) PHAGE_Lister_B054: gp50; HMPREF9225_1660; phage(gi157325334) 8e-35 Click
65complement(1733472..1734047) PHAGE_Lactob_Sha1: phage protein; HMPREF9225_1661; phage(gi418489843) 4e-17 Click
66complement(1734044..1734295) phosphoribosylaminoimidazole-succinocarboxamide synthetase; HMPREF9225_1662 0.0 Click
67complement(1734354..1734566) 50S ribosomal protein L19; HMPREF9225_1663 0.0 Click
68complement(1734658..1734822) hypothetical protein; HMPREF9225_1664 0.0 Click
69complement(1734858..1735070) conserved hypothetical protein; HMPREF9225_1665 0.0 Click
70complement(1735094..1735561) PHAGE_Entero_phiFL4A: hypothetical protein; HMPREF9225_1666; phage(gi281416446) 4e-07 Click
71complement(1735596..1735790) thioredoxin; HMPREF9225_1667 0.0 Click
72complement(1735834..1736325) conserved hypothetical protein; HMPREF9225_1668 0.0 Click
73complement(1736328..1736654) protoheme IX farnesyltransferase; HMPREF9225_1669 0.0 Click
74complement(1736766..1736933) conserved hypothetical protein; HMPREF9225_1670 0.0 Click
75complement(1736940..1737173) conserved hypothetical protein; HMPREF9225_1671 0.0 Click
761737220..1737597 PHAGE_Staphy_JS01: hypothetical protein; HMPREF9225_1672; phage(gi526003585) 3e-05 Click
77complement(1737575..1737775) conserved hypothetical protein; HMPREF9225_1673 0.0 Click
78complement(1737793..1738005) PHAGE_Lister_B054: gp41; HMPREF9225_1674; phage(gi157325325) 2e-06 Click
791738146..1738544 PHAGE_Lister_B054: gp41; HMPREF9225_1675; phage(gi157325325) 5e-13 Click
801738554..1739066 hypothetical protein; HMPREF9225_1676 0.0 Click
811739257..1739847 PHAGE_Clostr_c_st: conserved hypothetical phage-related protein; HMPREF9225_1677; phage(gi80159810) 8e-05 Click
821739870..1741033 PHAGE_Staphy_JS01: integrase; HMPREF9225_1678; phage(gi526003582) 4e-16 Click
831741126..1741141 attR    CGTGGGTTCGAATCCC 0.0 Click
84complement(1741265..1741540) RelE/StbE family addiction module protein; HMPREF9225_1679 0.0 Click
85complement(1741537..1741758) DNA damage-inducible protein; HMPREF9225_1680 0.0 Click
861741955..1744153 PHAGE_Megavi_lba: hypothetical protein; HMPREF9225_1681; phage(gi448825668) 7e-06 Click