Enterococcus faecalis TX4000 .1, whole [asmbl_id: NC_000000].2839834, GC%: 37.50%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 27 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
196726..98612 PHAGE_Strept_YMC_2011: lpxtg cell wall surface protein, collagen binding domain protein; HMPREF9496_00076; phage(gi399498696) 5e-05 Click
298734..99291 UPF0090 family protein; HMPREF9496_00077 0.0 Click
3complement(99288..99416) hypothetical protein; HMPREF9496_00078 0.0 Click
499435..100634 transcription termination factor NusA; HMPREF9496_00079 0.0 Click
5100640..100954 cytosolic protein YlxR; HMPREF9496_00080 0.0 Click
6100944..101249 ribosomal protein L7Ae; HMPREF9496_00081 0.0 Click
7101262..103658 PHAGE_Cafete_BV_PW1: putative eIF-2/eIF-5B; HMPREF9496_00082; phage(gi310831102) 2e-23 Click
8103683..104033 ribosome-binding factor A; HMPREF9496_00083 0.0 Click
9104116..104346 hypothetical protein; HMPREF9496_00084 0.0 Click
10complement(104406..104891) PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF9496_00085; phage(gi282598746) 4e-62 Click
11complement(104926..105408) PHAGE_Entero_phiEf11: cI-like repressor; HMPREF9496_00086; phage(gi282598745) 3e-20 Click
12105587..105760 conserved hypothetical protein; HMPREF9496_00087 0.0 Click
13105806..106561 PHAGE_Strept_M102: hypothetical protein M102_gp21; HMPREF9496_00088; phage(gi242345592) 2e-33 Click
14106580..107422 PHAGE_Entero_EF62phi: D replication protein DC; HMPREF9496_00089; phage(gi384519773) 1e-26 Click
15107489..107881 conserved hypothetical protein; HMPREF9496_00090 0.0 Click
16107901..108308 PHAGE_Lactob_Sha1: phage transcriptional activator RinA; HMPREF9496_00091; phage(gi418489798) 5e-18 Click
17108311..108448 conserved domain protein; HMPREF9496_00092 0.0 Click
18108530..108946 PHAGE_Entero_phiEf11: putative major structural protein; HMPREF9496_00093; phage(gi282598740) 2e-07 Click
19108959..109471 PHAGE_Strept_TP_J34: putative major tail protein; HMPREF9496_00094; phage(gi444475914) 1e-38 Click
20109505..109864 PHAGE_Strept_858: orf17; HMPREF9496_00095; phage(gi168229290) 3e-12 Click
21109957..110250 PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_45; HMPREF9496_00096; phage(gi13487846) 4e-08 Click
22110240..113173 PHAGE_Strept_Dp_1: TMP; HMPREF9496_00097; phage(gi327198366) 9e-123 Click
23113175..114101 PHAGE_Entero_phiEf11: putative phage tail protein; HMPREF9496_00098; phage(gi282598752) 9e-146 Click
24114114..115571 PHAGE_Entero_phiEf11: putative phage structural protein; HMPREF9496_00099; phage(gi282598760) 4e-173 Click
25115604..117373 PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF9496_00100; phage(gi282598748) 0.0 Click
26117397..117792 PHAGE_Entero_EF62phi: holin; HMPREF9496_00101; phage(gi384519787) 5e-38 Click
27117911..119035 PHAGE_Lister_vB_LmoM_AG20: N/A; HMPREF9496_00102; phage(gi472437328) 3e-38 Click

Region 2, total : 57 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1983943..983954 attL    AAAAAATAAAAG 0.0 Click
2complement(984351..987008) PHAGE_Lister_B054: Tmp; HMPREF9496_01004; phage(gi157325302) 2e-168 Click
3complement(987011..987151) PHAGE_Lister_B054: gp17; HMPREF9496_01005; phage(gi157325301) 2e-08 Click
4complement(987192..987524) PHAGE_Lister_B054: gp16; HMPREF9496_01006; phage(gi157325300) 4e-28 Click
5complement(987577..987975) PHAGE_Lister_B054: gp15; HMPREF9496_01007; phage(gi157325299) 2e-33 Click
6complement(987991..989028) PHAGE_Lister_B054: gp14; HMPREF9496_01008; phage(gi157325298) 2e-104 Click
7complement(989025..989501) PHAGE_Lister_B054: gp13; HMPREF9496_01009; phage(gi157325297) 9e-26 Click
8complement(989488..989847) PHAGE_Lister_B054: gp12; HMPREF9496_01010; phage(gi157325296) 4e-07 Click
9complement(989847..990449) PHAGE_Lister_B054: gp11; HMPREF9496_01011; phage(gi157325295) 2e-38 Click
10complement(990449..990790) PHAGE_Lister_B054: gp10; HMPREF9496_01012; phage(gi157325294) 2e-20 Click
11complement(990802..991218) PHAGE_Lister_B054: gp9; HMPREF9496_01013; phage(gi157325293) 4e-21 Click
12complement(991208..992089) PHAGE_Lister_B054: gp8; HMPREF9496_01014; phage(gi157325292) 9e-84 Click
13complement(992110..992580) PHAGE_Lister_B054: gp7; HMPREF9496_01015; phage(gi157325291) 3e-29 Click
14complement(992583..993686) PHAGE_Lister_B054: gp6; HMPREF9496_01016; phage(gi157325290) 4e-113 Click
15complement(993699..993908) LysM domain protein; HMPREF9496_01017 0.0 Click
16complement(993901..994188) PHAGE_Lactob_LP65: hypothetical protein LP65_gp078; HMPREF9496_01018; phage(gi56693126) 6e-25 Click
17complement(994243..994407) conserved hypothetical protein; HMPREF9496_01019 0.0 Click
18complement(994400..995644) PHAGE_Lister_B054: gp4; HMPREF9496_01020; phage(gi157325288) 4e-59 Click
19complement(995634..997028) PHAGE_Lister_B054: gp3; HMPREF9496_01021; phage(gi157325287) 2e-148 Click
20complement(997051..998487) PHAGE_Lister_B054: TerL; HMPREF9496_01022; phage(gi157325286) 3e-167 Click
21complement(998468..999193) PHAGE_Staphy_PH15: putative small terminase subunit; HMPREF9496_01023; phage(gi119967834) 5e-08 Click
22complement(999208..999438) PHAGE_Lister_B054: gp79; HMPREF9496_01024; phage(gi157325363) 3e-14 Click
23complement(999561..1000829) PHAGE_Strept_1: transferase; HMPREF9496_01025; phage(gi39653711) 6e-61 Click
24complement(1000874..1001176) conserved domain protein; HMPREF9496_01026 0.0 Click
25complement(1001639..1001723) tRNA 0.0 Click
26complement(1001883..1002467) sigma-70, region 4; HMPREF9496_01028 0.0 Click
27complement(1002568..1002756) conserved hypothetical protein; HMPREF9496_01029 0.0 Click
28complement(1002847..1003038) PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF9496_01030; phage(gi281416246) 8e-15 Click
29complement(1003032..1003349) replicase domain protein; HMPREF9496_01031 0.0 Click
30complement(1003363..1003794) PHAGE_Lister_B054: gp69; HMPREF9496_01032; phage(gi157325352) 4e-16 Click
31complement(1003794..1004330) PHAGE_Entero_phiEF24C: hypothetical protein EFP_gp160; HMPREF9496_01033; phage(gi158079456) 3e-20 Click
32complement(1004323..1004682) PHAGE_Entero_EF62phi: Phage related protein; HMPREF9496_01034; phage(gi384519765) 3e-40 Click
33complement(1004696..1004974) PHAGE_Entero_EF62phi: hypothetical protein; HMPREF9496_01035; phage(gi384519769) 1e-38 Click
34complement(1004971..1005453) PHAGE_Entero_phiEF24C: hypothetical protein EFP_gp196; HMPREF9496_01036; phage(gi158079492) 1e-29 Click
35complement(1005450..1005893) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_01037; phage(gi281416349) 4e-29 Click
36complement(1005890..1006843) PHAGE_Entero_phiFL3A: DNA cytosine methyltransferase; HMPREF9496_01038; phage(gi281416239) 0.0 Click
37complement(1006904..1007701) PHAGE_Lister_2389: methylase; HMPREF9496_01039; phage(gi17488539) 3e-109 Click
38complement(1007759..1007986) PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF9496_01040; phage(gi282598739) 1e-08 Click
39complement(1008017..1008211) hypothetical protein; HMPREF9496_01041 0.0 Click
40complement(1008236..1008985) PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF9496_01042; phage(gi281416237) 3e-118 Click
41complement(1009069..1009383) conserved hypothetical protein; HMPREF9496_01043 0.0 Click
42complement(1009404..1009901) PHAGE_Geobac_GBSV1: putative recombination protein U; HMPREF9496_01044; phage(gi158267612) 1e-17 Click
43complement(1009917..1010681) PHAGE_Strept_3: hypothetical protein SpyM3_1139; HMPREF9496_01045; phage(gi28876309) 2e-12 Click
44complement(1010693..1011394) PHAGE_Lister_B054: gp51; HMPREF9496_01046; phage(gi157325335) 3e-42 Click
45complement(1011394..1012566) conserved hypothetical protein; HMPREF9496_01047 0.0 Click
46complement(1012567..1014681) PHAGE_Brocho_NF5: gp34; HMPREF9496_01048; phage(gi327197619) 5e-64 Click
47complement(1014686..1014976) conserved hypothetical protein; HMPREF9496_01049 0.0 Click
48complement(1015032..1015247) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_01050; phage(gi281416334) 1e-05 Click
49complement(1015248..1015415) conserved hypothetical protein; HMPREF9496_01051 0.0 Click
50complement(1015427..1015657) putative VrlI protein; HMPREF9496_01052 0.0 Click
51complement(1015638..1016192) conserved hypothetical protein; HMPREF9496_01053 0.0 Click
52complement(1016261..1016440) conserved hypothetical protein; HMPREF9496_01054 0.0 Click
53complement(1016453..1016689) PHAGE_Lister_B054: gp42; HMPREF9496_01055; phage(gi157325326) 8e-14 Click
541016804..1017127 PHAGE_Lister_B054: gp41; HMPREF9496_01056; phage(gi157325325) 2e-19 Click
551017148..1017612 PHAGE_Lister_B025: gp36; HMPREF9496_01057; phage(gi157325252) 2e-21 Click
561017630..1018385 PHAGE_Entero_phiEf11: LysM domain protein; HMPREF9496_01058; phage(gi282598770) 8e-17 Click
571018558..1019037 PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF9496_01059; phage(gi281416277) 3e-28 Click
581019107..1019118 attR    AAAAAATAAAAG 0.0 Click
591019193..1019474 conserved hypothetical protein; HMPREF9496_01060 0.0 Click
601019474..1020700 PHAGE_Lactob_Lj965: putative integrase; HMPREF9496_01061; phage(gi41179218) 2e-32 Click

Region 3, total : 28 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11462182..1462193 attL    AAAATAAAAGAA 0.0 Click
2complement(1462406..1462729) PHAGE_Human__8: LANA; HMPREF9496_01488; phage(gi139472804) 8e-06 Click
31463102..1463545 PHAGE_Bacill_phiAGATE: putative ribonucleotide reductase class Ib, NrdI; HMPREF9496_01489; phage(gi448260994) 3e-07 Click
41463604..1463783 conserved hypothetical protein; HMPREF9496_01490 0.0 Click
51464149..1464397 conserved hypothetical protein; HMPREF9496_01491 0.0 Click
6complement(1464434..1464919) conserved hypothetical protein; HMPREF9496_01492 0.0 Click
7complement(1464995..1465465) hypothetical protein; HMPREF9496_01493 0.0 Click
8complement(1465587..1466888) PHAGE_Entero_phiFL4A: endolysin; HMPREF9496_01494; phage(gi281416489) 0.0 Click
9complement(1466947..1467144) conserved hypothetical protein; HMPREF9496_01495 0.0 Click
10complement(1467141..1467497) PHAGE_Lactoc_r1t: hypothetical protein r1tp46; HMPREF9496_01496; phage(gi23455765) 3e-24 Click
11complement(1467502..1467630) phage uncharacterized protein, XkdX family; HMPREF9496_01497 0.0 Click
12complement(1467630..1468064) conserved hypothetical protein; HMPREF9496_01498 0.0 Click
13complement(1468099..1469574) PHAGE_Deep_s_D6E: tail fiber protein; HMPREF9496_01499; phage(gi423262345) 1e-17 Click
14complement(1469587..1470216) PHAGE_Deep_s_D6E: hypothetical protein; HMPREF9496_01500; phage(gi423262344) 4e-37 Click
15complement(1470200..1471354) PHAGE_Deep_s_D6E: baseplate protein; HMPREF9496_01501; phage(gi423262343) 3e-73 Click
16complement(1471347..1471694) PHAGE_Deep_s_D6E: hypothetical protein; HMPREF9496_01502; phage(gi423262341) 9e-11 Click
17complement(1471694..1472026) PHAGE_Lister_B054: gp22; HMPREF9496_01503; phage(gi157325306) 5e-24 Click
18complement(1472026..1472856) PHAGE_Deep_s_D6E: hypothetical protein; HMPREF9496_01504; phage(gi423262340) 2e-52 Click
19complement(1472857..1473219) PHAGE_Deep_s_D6E: hypothetical protein; HMPREF9496_01505; phage(gi423262339) 2e-22 Click
20complement(1473229..1473786) PHAGE_Deep_s_D6E: hypothetical protein; HMPREF9496_01506; phage(gi423262338) 8e-06 Click
21complement(1473786..1476351) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9496_01507; phage(gi23455811) 4e-84 Click
221476913..1477173 hypothetical protein; HMPREF9496_01508 0.0 Click
231477447..1478739 PROPHAGE_Shewan_MR-1: ISSod4, transposase; HMPREF9496_01509; phage(gi24373869) 7e-79 Click
24complement(1478833..1478997) hypothetical protein; HMPREF9496_01510 0.0 Click
25complement(1478994..1479218) conserved hypothetical protein; HMPREF9496_01511 0.0 Click
261479356..1480618 PTS system, lactose/cellobiose family IIC component; HMPREF9496_01512 0.0 Click
271480790..1482625 glycosyl hydrolase family 35; HMPREF9496_01513 0.0 Click
281483193..1483330 conserved domain protein; HMPREF9496_01514 0.0 Click
291483295..1483306 attR    AAAATAAAAGAA 0.0 Click
301483609..1484787 PHAGE_Lactoc_bIL312: integrase; HMPREF9496_01515; phage(gi13095892) 2e-24 Click

Region 4, total : 18 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(2122244..2122465) PHAGE_Lactoc_bIL312: Csp; HMPREF9496_02182; phage(gi13095918) 1e-26 Click
2complement(2123309..2124550) PHAGE_Entero_phiFL3A: endolysin; HMPREF9496_02183; phage(gi281416276) 1e-171 Click
3complement(2124551..2124784) PHAGE_Entero_phiFL3A: holin; HMPREF9496_02184; phage(gi281416275) 4e-32 Click
4complement(2124777..2124998) PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF9496_02185; phage(gi281416274) 2e-34 Click
5complement(2125033..2125188) PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp56; HMPREF9496_02186; phage(gi215401226) 1e-05 Click
6complement(2125190..2125534) conserved hypothetical protein; HMPREF9496_02187 0.0 Click
7complement(2125524..2126015) PHAGE_Entero_1: host specificity protein; HMPREF9496_02188; phage(gi225626383) 4e-07 Click
8complement(2126015..2126302) PHAGE_Weisse_phiYS61: putative tail fiber protein; HMPREF9496_02189; phage(gi399528395) 4e-09 Click
9complement(2126299..2126895) PHAGE_Ralsto_RSL1: unnamed protein product; HMPREF9496_02190; phage(gi189426961) 1e-10 Click
10complement(2126888..2127769) PHAGE_Lactoc_bIL285: Orf55; HMPREF9496_02191; phage(gi13095735) 4e-18 Click
11complement(2127788..2130595) PHAGE_Lactoc_bIL285: endopeptidase; HMPREF9496_02192; phage(gi13095734) 5e-158 Click
12complement(2130577..2131311) PHAGE_Lactob_1: tail protein; HMPREF9496_02193; phage(gi219563208) 3e-16 Click
13complement(2131301..2134198) PHAGE_Entero_1: type measure protein; HMPREF9496_02194; phage(gi225626385) 4e-96 Click
14complement(2134446..2134796) conserved domain protein; HMPREF9496_02195 0.0 Click
15complement(2134849..2135697) PHAGE_Cronob_phiES15: putative major tail protein; HMPREF9496_02196; phage(gi401817602) 1e-12 Click
16complement(2135698..2136072) conserved hypothetical protein; HMPREF9496_02197 0.0 Click
17complement(2136075..2136419) PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; HMPREF9496_02198; phage(gi134287346) 2e-05 Click
18complement(2136917..2138413) PHAGE_Acanth_moumouvirus: asparaginyl t-RNA synthetase; HMPREF9496_02199; phage(gi441432571) 2e-12 Click

Region 5, total : 37 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12370170..2370181 attL    TTTTATGAAAAA 0.0 Click
2complement(2384786..2385154) PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp11; HMPREF9496_02456; phage(gi90592647) 3e-10 Click
3complement(2385151..2385495) hypothetical protein; HMPREF9496_02457 0.0 Click
4complement(2385509..2385691) conserved hypothetical protein; HMPREF9496_02458 0.0 Click
5complement(2385720..2386607) PHAGE_Pseudo_UFV_P2: major head protein; HMPREF9496_02459; phage(gi410491826) 2e-09 Click
6complement(2386621..2387265) PHAGE_Strept_5: hypothetical protein SpyM3_1323; HMPREF9496_02460; phage(gi28876405) 3e-06 Click
7complement(2387462..2387806) conserved hypothetical protein; HMPREF9496_02461 0.0 Click
8complement(2387847..2388068) conserved domain protein; HMPREF9496_02462 0.0 Click
9complement(2388065..2389822) PHAGE_Entero_phiFL1A: phage head protein; HMPREF9496_02463; phage(gi281416365) 6e-20 Click
10complement(2389797..2391284) PHAGE_Deep_s_D6E: portal protein; HMPREF9496_02464; phage(gi423262330) 8e-42 Click
11complement(2391296..2392585) PHAGE_Brocho_NF5: gp2; HMPREF9496_02465; phage(gi327197586) 0.0 Click
12complement(2392557..2393360) PHAGE_Entero_phiFL1A: terminase small subunit; HMPREF9496_02466; phage(gi281416361) 2e-124 Click
13complement(2393407..2394129) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_02467; phage(gi281416360) 3e-136 Click
14complement(2394675..2394833) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_02468; phage(gi281416359) 7e-23 Click
15complement(2394846..2395460) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_02469; phage(gi281416358) 6e-112 Click
16complement(2395694..2395766) tRNA 0.0 Click
17complement(2395991..2396407) PHAGE_Entero_phiFL1A: transcriptional regulator ArpU family; HMPREF9496_02471; phage(gi281416357) 5e-69 Click
18complement(2396775..2397035) conserved hypothetical protein; HMPREF9496_02472 0.0 Click
19complement(2397138..2397314) hypothetical protein; HMPREF9496_02473 0.0 Click
20complement(2397314..2397502) PHAGE_Entero_phiFL1A: resolvase; HMPREF9496_02474; phage(gi281416343) 1e-27 Click
21complement(2397519..2397746) PHAGE_Entero_phiFL1A: resolvase; HMPREF9496_02475; phage(gi281416343) 9e-32 Click
22complement(2397755..2398054) PHAGE_Entero_phiFL1A: DNA binding protein; HMPREF9496_02476; phage(gi281416342) 2e-45 Click
23complement(2398055..2398357) PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF9496_02477; phage(gi281416234) 7e-51 Click
24complement(2398361..2399323) PHAGE_Entero_phiFL1A: recombinase; HMPREF9496_02478; phage(gi281416341) 2e-177 Click
25complement(2399337..2400227) PHAGE_Entero_phiFL1A: RecT family protein; HMPREF9496_02479; phage(gi281416340) 7e-169 Click
26complement(2400230..2401171) PHAGE_Entero_phiFL1A: endonuclease YqaJ superfamily; HMPREF9496_02480; phage(gi281416339) 3e-179 Click
27complement(2401269..2401496) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_02481; phage(gi281416337) 9e-37 Click
28complement(2401496..2401819) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_02482; phage(gi281416336) 8e-49 Click
29complement(2401863..2402048) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_02483; phage(gi281416335) 8e-25 Click
30complement(2402039..2402233) PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF9496_02484; phage(gi281416334) 5e-28 Click
312402286..2402468 conserved domain protein; HMPREF9496_02485 0.0 Click
32complement(2402508..2403278) PHAGE_Entero_phiFL1A: anti-repressor protein; HMPREF9496_02486; phage(gi281416331) 3e-47 Click
33complement(2403269..2403586) conserved hypothetical protein; HMPREF9496_02487 0.0 Click
34complement(2403592..2403783) PHAGE_Strept_MM1: hypothetical protein MM1p05; HMPREF9496_02488; phage(gi15088748) 5e-06 Click
352404053..2404418 PHAGE_Strept_MM1: repressor protein; HMPREF9496_02489; phage(gi15088747) 6e-18 Click
362404423..2405070 PHAGE_Entero_phiFL4A: hypothetical protein; HMPREF9496_02490; phage(gi281416437) 6e-11 Click
372405170..2405952 PHAGE_Entero_phiEf11: LysM domain protein; HMPREF9496_02491; phage(gi282598770) 2e-06 Click
382405963..2405974 attR    TTTTATGAAAAA 0.0 Click
392405967..2406296 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1464; HMPREF9496_02492; phage(gi41179289) 5e-19 Click
402406350..2407519 PHAGE_Clostr_phiC2: putative integrase; HMPREF9496_02493; phage(gi134287379) 1e-32 Click