Lactobacillus salivarius ACS-116-V-Col5a , whole genome [asmbl_id: NC_000000].2044602, GC%: 32.72%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 24 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1214266..214277 attL    ATAATTGGTACA 0.0 Click
2complement(217682..218155) PHAGE_Lactob_phig1e: hypothetical protein phig1ep41; HMPREF9269_1244; phage(gi23455797) 2e-15 Click
3complement(218229..218411) conserved hypothetical protein; HMPREF9269_1245 0.0 Click
4complement(218423..218557) conserved hypothetical protein; HMPREF9269_1246 0.0 Click
5complement(218558..218866) conserved hypothetical protein; HMPREF9269_1247 0.0 Click
6complement(218892..219113) hypothetical protein; HMPREF9269_1248 0.0 Click
7complement(219179..219427) conserved hypothetical protein; HMPREF9269_1249 0.0 Click
8complement(219411..219650) hypothetical protein; HMPREF9269_1250 0.0 Click
9complement(219637..220047) PHAGE_Bacill_BCJA1c: rus; HMPREF9269_1251; phage(gi56694892) 1e-46 Click
10complement(220273..222531) PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp22; HMPREF9269_1252; phage(gi56694890) 0.0 Click
11complement(222625..224205) PHAGE_Bacill_BCJA1c: DEAD box family helicase; HMPREF9269_1253; phage(gi56694884) 0.0 Click
12complement(224216..224959) PHAGE_Clostr_phiCD38_2: hypothetical protein; HMPREF9269_1254; phage(gi333798150) 3e-46 Click
13complement(224964..225386) PHAGE_Strept_MM1: hypothetical protein MM1p17; HMPREF9269_1255; phage(gi15088759) 1e-30 Click
14complement(225399..225905) PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp15; HMPREF9269_1256; phage(gi56694883) 1e-20 Click
15complement(225920..226990) PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp14; HMPREF9269_1257; phage(gi56694882) 5e-82 Click
16complement(226993..228294) PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp13; HMPREF9269_1258; phage(gi56694881) 3e-165 Click
17complement(228278..228556) hypothetical protein; HMPREF9269_1259 0.0 Click
18complement(228568..228681) conserved hypothetical protein; HMPREF9269_1260 0.0 Click
19complement(228886..229170) conserved hypothetical protein; HMPREF9269_1261 0.0 Click
20complement(229180..229371) PHAGE_Lactob_phiadh: hypothetical protein phiadhp12; HMPREF9269_1262; phage(gi9633012) 9e-13 Click
21229852..230265 PHAGE_Bacill_BCJA1c: repressor; HMPREF9269_1263; phage(gi56694874) 6e-24 Click
22230276..230761 PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp4; HMPREF9269_1264; phage(gi56694873) 6e-11 Click
23230828..231322 PHAGE_Brocho_BL3: gp30; HMPREF9269_1265; phage(gi327409422) 6e-28 Click
24231341..231703 PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF21; HMPREF9269_1266; phage(gi48697281) 9e-26 Click
25231647..231658 attR    ATAATTGGTACA 0.0 Click
26231789..232943 PROPHAGE_Oceano_HTE831: integrase; HMPREF9269_1267; phage(gi23097608) 8e-86 Click

Region 2, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1321763..322908 PHAGE_Lister_vB_LmoM_AG20: N/A; HMPREF9269_1126; phage(gi472437364) 2e-08 Click
2322992..323654 conserved hypothetical protein; HMPREF9269_1127 0.0 Click
3324674..324931 toxin-antitoxin system, antitoxin component, PHD family; HMPREF9269_1128 0.0 Click
4324928..325299 PHAGE_Entero_P1: Doc; HMPREF9269_1129; phage(gi46401725) 4e-06 Click
5325673..325825 conserved hypothetical protein; HMPREF9269_1346 0.0 Click
6325827..326357 PHAGE_Lactob_Sha1: restriction endonuclease; HMPREF9269_1347; phage(gi418489800) 2e-57 Click
7326536..326997 PHAGE_Strept_Sfi19: putative terminase small subunit; HMPREF9269_1348; phage(gi9632896) 2e-42 Click
8326997..328880 PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; HMPREF9269_1349; phage(gi418489802) 0.0 Click
9328870..329052 PHAGE_Lactob_Sha1: phage head-tail joining protein; HMPREF9269_1350; phage(gi418489803) 3e-06 Click
10329064..330239 PHAGE_Strept_Sfi19: portal protein; HMPREF9269_1351; phage(gi9632899) 2e-109 Click
11330220..330939 PHAGE_Lactob_Sha1: protease subunit of ATP-dependent Clp protease; HMPREF9269_1352; phage(gi418489805) 3e-78 Click
12330929..332125 PHAGE_Strept_Sfi19: major head protein; HMPREF9269_1353; phage(gi9632900) 4e-125 Click
13332137..332460 PHAGE_Strept_Sfi19: putative DNA packaging protein; HMPREF9269_1354; phage(gi9632901) 2e-18 Click
14332501..332809 PHAGE_Strept_Sfi19: putative head-tail joining protein; HMPREF9269_1355; phage(gi9632902) 4e-10 Click
15332802..333230 PHAGE_Lactob_phiAT3: putative head-tail joining protein; HMPREF9269_1356; phage(gi48697267) 8e-19 Click
16333230..333607 PHAGE_Lactob_phiAT3: putative tail component; HMPREF9269_1357; phage(gi48697268) 8e-12 Click
17333609..334313 PHAGE_Strept_Sfi19: major tail protein; HMPREF9269_1358; phage(gi9632904) 6e-29 Click
18334368..334766 PHAGE_Lactoc_bIL309: Orf49; HMPREF9269_1359; phage(gi13095854) 1e-05 Click
19335023..335436 conserved hypothetical protein; HMPREF9269_1360 0.0 Click
20335491..339216 PHAGE_Lactob_phiAT3: putative minor tail protein; HMPREF9269_1361; phage(gi48697271) 8e-134 Click
21339229..340056 PHAGE_Lactob_LF1: hypothetical protein; HMPREF9269_1362; phage(gi418489398) 7e-62 Click
22340072..342384 PHAGE_Lactob_LF1: phage-associated protein/endopeptidase; HMPREF9269_1363; phage(gi418489399) 3e-69 Click

Region 3, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11276861..1276874 attL    TTTAATCTCATCAA 0.0 Click
2complement(1284480..1286831) PHAGE_Lactob_phig1e: hypothetical protein phig1ep22; HMPREF9269_2123; phage(gi23455812) 5e-34 Click
3complement(1286844..1287665) PHAGE_Lactob_phig1e: hypothetical protein phig1ep23; HMPREF9269_2124; phage(gi254854751) 3e-58 Click
4complement(1287665..1292044) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9269_2125; phage(gi23455811) 6e-155 Click
5complement(1292060..1292671) PHAGE_Lactob_phig1e: hypothetical protein phig1ep25; HMPREF9269_2126; phage(gi23455810) 3e-42 Click
6complement(1292674..1293108) hypothetical protein; HMPREF9269_2127 0.0 Click
7complement(1293161..1293676) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9269_2128; phage(gi23455808) 6e-34 Click
8complement(1293679..1294083) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9269_2129; phage(gi23455807) 6e-18 Click
9complement(1294067..1294444) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9269_2130; phage(gi23455806) 2e-18 Click
10complement(1294444..1294791) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9269_2131; phage(gi23455805) 7e-27 Click
11complement(1294788..1295174) PHAGE_Lactob_H: hypothetical protein; HMPREF9269_2132; phage(gi148750841) 5e-14 Click
12complement(1295185..1296069) PHAGE_Lactob_H: major capsid protein gp34; HMPREF9269_2133; phage(gi148750840) 2e-95 Click
13complement(1296087..1296653) PHAGE_Lister_A118: putative scaffolding protein; HMPREF9269_2134; phage(gi16798788) 2e-33 Click
14complement(1296753..1296953) conserved hypothetical protein; HMPREF9269_2135 0.0 Click
15complement(1296946..1298475) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9269_2136; phage(gi23455801) 5e-87 Click
16complement(1298479..1300020) PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9269_2137; phage(gi23455800) 3e-138 Click
17complement(1300033..1301340) PHAGE_Lactob_phig1e: putative terminase large subunit; HMPREF9269_2138; phage(gi23455799) 2e-157 Click
18complement(1301333..1301809) PHAGE_Lactob_AQ113: phage terminase small subunit; HMPREF9269_2139; phage(gi446730229) 6e-16 Click
19complement(1301816..1301968) conserved hypothetical protein; HMPREF9269_2140 0.0 Click
20complement(1302000..1302512) hypothetical protein; HMPREF9269_1750 0.0 Click
211302267..1302280 attR    TTTAATCTCATCAA 0.0 Click
221302598..1302932 phage integrase, N-terminal SAM domain protein; HMPREF9269_1751 0.0 Click
23complement(1302933..1305326) PHAGE_Lactoc_949: putative DNA gyrase subunit A-topoisomerase; HMPREF9269_0539; phage(gi327197938) 3e-78 Click
24complement(1305351..1307372) PHAGE_Lactoc_949: putative DNA gyrase subunit B-topoisomerase; HMPREF9269_0540; phage(gi327197937) 4e-66 Click

Region 4, total : 17 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11384852..1385178 PHAGE_Staphy_IPLA35: putative endonuclease; HMPREF9269_0441; phage(gi215401144) 3e-20 Click
21385303..1385755 PHAGE_Geobac_E2: putative terminase small subunit; HMPREF9269_0442; phage(gi148747728) 2e-23 Click
31385739..1387511 PHAGE_Lactob_JCL1032: putative terminase large subunit; HMPREF9269_0443; phage(gi418489114) 0.0 Click
41387524..1388768 PHAGE_Staphy_phi7401PVL: portal protein; HMPREF9269_0444; phage(gi448244665) 3e-90 Click
51388749..1389453 PHAGE_Lactob_JCL1032: putative ClpP protease; HMPREF9269_0445; phage(gi418489116) 5e-69 Click
61389450..1390580 PHAGE_Staphy_phi7401PVL: phage major capsid protein; HMPREF9269_0446; phage(gi448244667) 3e-79 Click
71390799..1391119 PHAGE_Lactob_Sha1: phage protein DNA packaging protein; HMPREF9269_0447; phage(gi418489807) 1e-06 Click
81391109..1391453 putative phage head-tail adaptor; HMPREF9269_0448 0.0 Click
91391465..1391896 PHAGE_Entero_1: head-tail joining protein; HMPREF9269_0449; phage(gi225626389) 4e-12 Click
101391893..1392264 conserved hypothetical protein; HMPREF9269_0450 0.0 Click
111392276..1392920 PHAGE_Entero_1: major tail protein; HMPREF9269_0451; phage(gi225626387) 3e-13 Click
121392920..1393309 PHAGE_Entero_1: hypothetical protein EFAP1_gp09; HMPREF9269_0452; phage(gi225626386) 2e-05 Click
131393357..1393482 conserved hypothetical protein; HMPREF9269_0453 0.0 Click
141393498..1397271 PHAGE_Staphy_CN125: tail length tape measure protein; HMPREF9269_0454; phage(gi239507410) 2e-62 Click
151397283..1398098 PHAGE_Staphy_2: phage tail tape measure protein like; HMPREF9269_0455; phage(gi156604006) 5e-15 Click
161398098..1399948 PHAGE_Lactob_LF1: phage-associated protein/endopeptidase; HMPREF9269_0456; phage(gi418489399) 2e-102 Click
171399952..1400710 PHAGE_Staphy_SpaA1: N-acetylmuramoyl-L-alanine amidase; HMPREF9269_0457; phage(gi399498885) 1e-23 Click