Pseudomonas fluorescens WH6 WH6_1, whole genome shotgun sequence. [asmbl_id: NC_000000].6265667, GC%: 60.57%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 40 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11241939..1241955 attL    TGGGGCAAAAATGGGGC 0.0 Click
2complement(1243244..1244515) PHAGE_Gifsy_2: bacteriophage integrase; PFWH6_1154; phage(gi169257268) 2e-63 Click
3complement(1244676..1246901) PHAGE_Pseudo_F116: DNA cytosine methyltransferase; PFWH6_1156; phage(gi56692910) 7e-101 Click
4complement(1247120..1247662) PHAGE_Entero_SfV: hypothetical protein SfVp30; PFWH6_1157; phage(gi19549017) 7e-31 Click
5complement(1247659..1247880) hypothetical protein; PFWH6_1158 0.0 Click
6complement(1247877..1248458) hypothetical protein; PFWH6_1159 0.0 Click
7complement(1248508..1248834) transcriptional regulator PrtN; PFWH6_1160 0.0 Click
8complement(1248990..1249274) hypothetical protein; PFWH6_1161 0.0 Click
9complement(1249284..1249865) hypothetical protein; PFWH6_1162 0.0 Click
101250227..1251966 hypothetical protein; PFWH6_1163 0.0 Click
111252807..1253067 PHAGE_Stx2_c_I: Cro protein; PFWH6_1164; phage(gi20065917) 9e-05 Click
121253396..1253914 PHAGE_Burkho_Bcep176: gp14; PFWH6_1165; phage(gi77864639) 2e-09 Click
131254124..1256352 PHAGE_Staphy_2638A: ORF003; PFWH6_1166; phage(gi66395453) 7e-56 Click
141256345..1256704 hypothetical protein; PFWH6_1167 0.0 Click
151257232..1257576 pyocin R2_PP, holin; PFWH6_1168 0.0 Click
161257782..1258411 PHAGE_Stenot_S1: putative terminase small subunit; PFWH6_1170; phage(gi213163901) 4e-06 Click
171258392..1260416 PHAGE_Synech_S_CBS3: large terminase subunit; PFWH6_1171; phage(gi331028008) 4e-120 Click
181260624..1262105 PHAGE_Vibrio_vB_VpaM_MAR: portal protein; PFWH6_1172; phage(gi428782728) 1e-93 Click
191262102..1263256 PHAGE_Entero_mEp213: head maturation protease; PFWH6_1173; phage(gi428782594) 2e-38 Click
201263660..1264655 PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFWH6_1174; phage(gi428782731) 4e-40 Click
211264658..1264978 hypothetical protein; PFWH6_1175 0.0 Click
221264975..1265634 PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFWH6_1176; phage(gi428782733) 6e-14 Click
231265634..1266149 hypothetical protein; PFWH6_1177 0.0 Click
241266146..1266712 PHAGE_Burkho_phi52237: phage baseplate assembly protein; PFWH6_1178; phage(gi72537705) 2e-17 Click
251266769..1267047 hypothetical protein; PFWH6_1179 0.0 Click
261267053..1267379 PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PFWH6_1180; phage(gi428782737) 9e-22 Click
271267376..1268257 PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; PFWH6_1181; phage(gi17313237) 1e-74 Click
281268259..1268867 PHAGE_Ralsto_phiRSA1: phage tail protein gpI; PFWH6_1182; phage(gi145708096) 3e-55 Click
291268860..1270398 PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; PFWH6_1183; phage(gi145708097) 1e-71 Click
301270550..1270657 hypothetical protein; PFWH6_1184 0.0 Click
311270936..1272102 PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PFWH6_1185; phage(gi428782746) 4e-75 Click
321272115..1272618 PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PFWH6_1186; phage(gi428782747) 4e-29 Click
331272633..1273232 hypothetical protein; PFWH6_1187 0.0 Click
341273240..1273344 hypothetical protein; PFWH6_1188 0.0 Click
351273383..1276253 PHAGE_Vibrio_VP882: phage-related tail protein; PFWH6_1189; phage(gi126010872) 6e-25 Click
361276264..1277109 PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PFWH6_1190; phage(gi428782751) 1e-23 Click
371277384..1278409 PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PFWH6_1191; phage(gi428782753) 8e-53 Click
381278478..1279041 PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PFWH6_1192; phage(gi414086784) 3e-41 Click
391279023..1279565 PHAGE_Burkho_Bcep22: Bcep22gp80; PFWH6_1193; phage(gi38640385) 5e-08 Click
401279715..1280509 PHAGE_Burkho_KS9: DNA adenine methylase gp25; PFWH6_1194; phage(gi255033757) 1e-99 Click
41complement(1281395..1282090) PHAGE_Pseudo_F116: hypothetical protein F116p67; PFWH6_1195; phage(gi56692976) 1e-51 Click
421287904..1287920 attR    TGGGGCAAAAATGGGGC 0.0 Click

Region 2, total : 40 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(4162163..4162696) PHAGE_Microc_LMM01: chitinase; PFWH6_3895; phage(gi117530240) 4e-39 Click
2complement(4162753..4163007) PHAGE_Pseudo_LUZ7: hypothetical protein PP-LUZ7_gp054; PFWH6_3896; phage(gi282599446) 3e-18 Click
3complement(4164904..4168629) PHAGE_Entero_HK633: central tail fiber; PFWH6_3897; phage(gi428782540) 0.0 Click
4complement(4168689..4169300) PHAGE_Cronob_phiES15: putative lambda tail assembly protein I; PFWH6_3898; phage(gi401817610) 7e-47 Click
5complement(4169362..4169712) lipoprotein; PFWH6_3899 0.0 Click
6complement(4169733..4170323) hypothetical protein; PFWH6_3900 0.0 Click
7complement(4170393..4171154) PHAGE_Entero_HK633: minor tail protein; PFWH6_3901; phage(gi428782537) 6e-67 Click
8complement(4171157..4171909) PHAGE_Entero_mEp237: minor tail protein L; PFWH6_3902; phage(gi435439282) 1e-78 Click
9complement(4171921..4172259) PHAGE_Entero_mEp234: minor tail protein M; PFWH6_3903; phage(gi428782269) 3e-29 Click
10complement(4172259..4175315) PHAGE_Pseudo_MP29: putative tail component protein; PFWH6_3904; phage(gi215480016) 6e-154 Click
11complement(4175343..4175645) PHAGE_Cronob_phiES15: hypothetical protein; PFWH6_3905; phage(gi401817604) 9e-08 Click
12complement(4175663..4176043) PHAGE_Escher_HK639: hypothetical protein; PFWH6_3906; phage(gi356870614) 2e-05 Click
13complement(4176047..4176703) PHAGE_Cronob_phiES15: putative major tail protein; PFWH6_3907; phage(gi401817602) 4e-32 Click
14complement(4176776..4177192) PHAGE_Cronob_phiES15: hypothetical protein; PFWH6_3908; phage(gi401817601) 4e-09 Click
15complement(4177189..4177845) PHAGE_Shigel_EP23: putative tail protein; PFWH6_3909; phage(gi371496282) 2e-17 Click
16complement(4177842..4178210) PHAGE_Pseudo_YuA: structural phage protein; PFWH6_3910; phage(gi162135146) 5e-09 Click
17complement(4178414..4178917) PHAGE_Escher_HK639: hypothetical protein; PFWH6_3911; phage(gi356870608) 6e-18 Click
18complement(4178957..4179550) hypothetical protein; PFWH6_3912 0.0 Click
19complement(4179600..4179749) PHAGE_Cronob_phiES15: putative major capsid protein; PFWH6_3913; phage(gi401817596) 5e-06 Click
20complement(4179740..4180567) PHAGE_Pseudo_vB_Pae_Kakheti25: major capsid protein; PFWH6_3914; phage(gi388542670) 3e-32 Click
21complement(4180579..4181289) PHAGE_Cronob_phiES15: hypothetical protein; PFWH6_3915; phage(gi401817595) 1e-38 Click
22complement(4181329..4182417) PHAGE_Salmon_vB_SenS_Ent1: putative head morphogenesis protein, SPP1 gp7 family; PFWH6_3916; phage(gi423261851) 6e-57 Click
23complement(4182392..4183855) PHAGE_Pseudo_vB_Pae_Kakheti25: portal protein; PFWH6_3917; phage(gi388542667) 3e-82 Click
24complement(4184324..4185811) PHAGE_Cronob_phiES15: terminase large subunit; PFWH6_3918; phage(gi401817592) 0.0 Click
25complement(4185814..4186422) PHAGE_Escher_HK639: terminase small subunit; PFWH6_3919; phage(gi356870601) 1e-54 Click
26complement(4186478..4186822) hypothetical protein; PFWH6_3920 0.0 Click
27complement(4186819..4187157) PHAGE_Burkho_BcepC6B: putative holin protein; PFWH6_3921; phage(gi48697210) 4e-05 Click
28complement(4187274..4187591) hypothetical protein; PFWH6_3922 0.0 Click
29complement(4187968..4188549) PHAGE_Pseudo_phi297: hypothetical protein; PFWH6_3923; phage(gi374531281) 3e-07 Click
30complement(4188546..4189175) PHAGE_Pseudo_vB_PaeS_PMG1: NinG protein; PFWH6_3924; phage(gi374531728) 4e-67 Click
31complement(4189506..4189922) PHAGE_Pseudo_AF: putative recombination protein NinB; PFWH6_3925; phage(gi431810328) 4e-41 Click
32complement(4189919..4190092) hypothetical protein; PFWH6_3926 0.0 Click
33complement(4190089..4190421) hypothetical protein; PFWH6_3927 0.0 Click
34complement(4190418..4190765) hypothetical protein; PFWH6_3928 0.0 Click
35complement(4190762..4191034) hypothetical protein; PFWH6_3929 0.0 Click
36complement(4191031..4191819) PHAGE_Pseudo_F116: hypothetical protein F116p33; PFWH6_3930; phage(gi56692949) 2e-44 Click
37complement(4191806..4192816) PHAGE_Pseudo_F116: hypothetical protein F116p32; PFWH6_3931; phage(gi56692948) 4e-38 Click
38complement(4192785..4193636) PHAGE_Pseudo_F10: Conserved hypothetical protein; putative antirepressor; PFWH6_3932; phage(gi148912801) 2e-36 Click
39complement(4193707..4194129) hypothetical protein; PFWH6_3933 0.0 Click
40complement(4194215..4194430) PHAGE_Pseudo_vB_PaeS_PMG1: Cro repressor protein; PFWH6_3934; phage(gi374531716) 2e-25 Click

Region 3, total : 26 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
14188779..4188790 attL    GCGGCGCGGAGC 0.0 Click
24197552..4197815 PHAGE_Burkho_BcepNazgul: hypothetical protein Nazgul23; PFWH6_3937; phage(gi34610132) 1e-24 Click
34198171..4198407 PHAGE_Burkho_DC1: hypothetical protein; PFWH6_3938; phage(gi401723044) 4e-09 Click
44198429..4198632 PHAGE_Entero_ST104: ORF8; PFWH6_3939; phage(gi46358656) 2e-07 Click
54198652..4198939 hypothetical protein; PFWH6_3940 0.0 Click
64198927..4199169 hypothetical protein; PFWH6_3941 0.0 Click
74199175..4199315 hypothetical protein; PFWH6_3942 0.0 Click
84199518..4199637 hypothetical protein; PFWH6_3943 0.0 Click
94199681..4200844 PHAGE_Pseudo_D3: Orf53; PFWH6_3944; phage(gi9635644) 5e-77 Click
104200927..4201613 PHAGE_Pseudo_D3: Orf52; PFWH6_3945; phage(gi9635643) 2e-51 Click
114201620..4202237 PHAGE_Pseudo_D3: Orf51; PFWH6_3946; phage(gi9635642) 4e-76 Click
124202234..4202752 hypothetical protein; PFWH6_3947 0.0 Click
134202834..4203148 hypothetical protein; PFWH6_3948 0.0 Click
144203570..4204046 PHAGE_Pseudo_D3: Orf68; PFWH6_3949; phage(gi9635659) 3e-25 Click
154204166..4204759 PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PFWH6_3950; phage(gi374531713) 8e-07 Click
164204818..4205171 hypothetical protein; PFWH6_3951 0.0 Click
174205546..4206541 PHAGE_Bordet_1: reverse transcriptase; PFWH6_3952; phage(gi41179367) 1e-30 Click
184206583..4207866 PHAGE_Mycoba_Porky: gp98; PFWH6_3953; phage(gi194303394) 4e-45 Click
19complement(4207877..4208125) hypothetical protein; PFWH6_3954 0.0 Click
204208163..4208687 PHAGE_Pseudo_phi297: hypothetical protein; PFWH6_3955; phage(gi374531251) 7e-25 Click
214208792..4209277 PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PFWH6_3956; phage(gi374531692) 9e-16 Click
224209358..4209669 hypothetical protein; PFWH6_3957 0.0 Click
234209673..4210074 phage-related hypothetical protein; PFWH6_3958 0.0 Click
24complement(4210480..4210671) hypothetical protein; PFWH6_3959 0.0 Click
254211174..4211521 PHAGE_Yersin_PY54: hypothetical protein PY54p34; PFWH6_3961; phage(gi33770543) 7e-06 Click
264211542..4211553 attR    GCGGCGCGGAGC 0.0 Click
274211560..4211793 hypothetical protein; PFWH6_3962 0.0 Click
284211793..4212929 PHAGE_Entero_mEp235: integrase; PFWH6_3963; phage(gi428781836) 3e-23 Click

Region 4, total : 8 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
14582176..4584347 PHAGE_Marseillevirus: translation elongation factor EF-1alpha; PFWH6_4317; phage(gi284504191) 1e-09 Click
2complement(4584384..4584770) PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; PFWH6_4318; phage(gi26989833) 4e-35 Click
3complement(4585083..4585196) hypothetical protein; PFWH6_4319 0.0 Click
44585622..4586716 PHAGE_Burkho_BcepMu: gp53; PFWH6_4320; phage(gi48696963) 5e-10 Click
54586860..4587063 PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf1; PFWH6_4321; phage(gi26989832) 2e-33 Click
64587106..4587219 PROPHAGE_Pseudo_KT2440: ISPpu15, transposase Orf1; PFWH6_4322; phage(gi26990788) 2e-15 Click
74587238..4587582 PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; PFWH6_4323; phage(gi26989833) 5e-29 Click
84587779..4588618 PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; PFWH6_4324; phage(gi26989833) 1e-143 Click