Escherichia coli 1827-70 gec1827.assembly.10, whole genome shotgun [asmbl_id: NC_000000].4803089, GC%: 50.79%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 47 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11295..1307 attL    AGCTTTTCATCGA 0.0 Click
25071..6425 PHAGE_Entero_HK629: tail fiber; EC182770_0008; phage(gi428782032) 0.0 Click
3complement(6405..6518) hypothetical protein; EC182770_0009 0.0 Click
46496..7095 PHAGE_Entero_cdtI: putative Lom-like outer membrane protein; EC182770_0010; phage(gi148609401) 1e-112 Click
5complement(7096..7269) PHAGE_Entero_BP_4795: hypothetical protein PBV4795_ORF74; EC182770_0011; phage(gi157166059) 3e-29 Click
6complement(7657..8394) PHAGE_Entero_lambda: hypothetical protein lambdap90; EC182770_0012; phage(gi9626267) 2e-54 Click
78352..8564 hypothetical protein; EC182770_0013 0.0 Click
88525..8841 PHAGE_Escher_D108: tail fiber protein; EC182770_0014; phage(gi281199694) 2e-16 Click
9complement(9014..9337) PHAGE_Entero_HK629: tail fiber protein; EC182770_0015; phage(gi428782034) 4e-46 Click
10complement(9499..10098) PHAGE_Entero_cdtI: putative Lom-like outer membrane protein; EC182770_0016; phage(gi148609401) 2e-106 Click
11complement(10166..13645) PHAGE_Entero_HK629: tail fiber; EC182770_0017; phage(gi428782032) 0.0 Click
12complement(13706..14278) PHAGE_Entero_HK629: tail component protein; EC182770_0018; phage(gi428782031) 4e-101 Click
13complement(14275..14874) PHAGE_Entero_HK629: tail component protein; EC182770_0019; phage(gi428782030) 8e-120 Click
14complement(15024..15689) PHAGE_Entero_HK629: minor tail protein; EC182770_0020; phage(gi428782029) 1e-112 Click
15complement(15721..16050) PHAGE_Entero_HK629: minor tail protein; EC182770_0021; phage(gi428782028) 5e-57 Click
16complement(16047..18626) PHAGE_Entero_HK629: tail length tape measure protein; EC182770_0022; phage(gi428782027) 0.0 Click
17complement(18619..19053) PHAGE_Entero_HK629: tail assembly protein; EC182770_0023; phage(gi428782026) 1e-80 Click
18complement(19035..19457) PHAGE_Entero_HK629: minor tail protein; EC182770_0024; phage(gi428782025) 2e-73 Click
19complement(19473..20192) PHAGE_Entero_HK629: major tail protein; EC182770_0025; phage(gi428782024) 1e-131 Click
20complement(20221..20616) PHAGE_Entero_HK629: minor tail protein; EC182770_0026; phage(gi428782023) 3e-71 Click
21complement(20613..20954) PHAGE_Entero_HK629: minor tail protein; EC182770_0027; phage(gi428782022) 3e-58 Click
22complement(21202..21555) PHAGE_Entero_HK629: head-tail connector Fii; EC182770_0028; phage(gi428782021) 9e-62 Click
23complement(21567..21962) PHAGE_Entero_HK629: DNA packaging protein Fi; EC182770_0029; phage(gi428782020) 9e-60 Click
24complement(22004..23023) PHAGE_Entero_HK629: major head subunit; EC182770_0030; phage(gi428782019) 0.0 Click
25complement(23085..23417) PHAGE_Entero_HK629: head decoration protein; EC182770_0031; phage(gi428782018) 9e-57 Click
26complement(23427..24746) PHAGE_Entero_HK629: head maturation protease; EC182770_0032; phage(gi428782016) 0.0 Click
27complement(24727..26328) PHAGE_Entero_HK629: portal protein; EC182770_0033; phage(gi428782015) 0.0 Click
28complement(26325..26531) PHAGE_Entero_HK629: head-tail connector; EC182770_0034; phage(gi428782014) 4e-32 Click
29complement(26528..28453) PHAGE_Entero_HK629: terminase large subunit A; EC182770_0035; phage(gi428782013) 0.0 Click
30complement(28428..28973) PHAGE_Entero_HK629: terminase small subunit nu1; EC182770_0036; phage(gi428782012) 1e-96 Click
3129942..30241 PROPHAGE_Escher_MG1655: IS3 transposase A; EC182770_0037; phage(gi226524700) 4e-49 Click
3230238..31104 PROPHAGE_Escher_MG1655: IS3 transposase B; EC182770_0038; phage(gi16128284) 3e-173 Click
33complement(31570..31746) protein gnsB; EC182770_0039 0.0 Click
34complement(32415..32627) PHAGE_Lactoc_bIL312: Csp; EC182770_0040; phage(gi13095918) 1e-15 Click
35complement(32991..33413) PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; EC182770_0041; phage(gi16765210) 1e-43 Click
36complement(33484..34017) PHAGE_Stx2_converting_86: lysozyme protein R; EC182770_0042; phage(gi116221999) 4e-98 Click
37complement(34073..34387) PHAGE_Entero_mEp460: hypothetical protein; EC182770_0043; phage(gi428782371) 2e-51 Click
38complement(34392..34607) PHAGE_Stx2_converting_II: holin; EC182770_0044; phage(gi302393164) 1e-27 Click
39complement(35361..35576) PHAGE_Lactoc_bIL312: Csp; EC182770_0045; phage(gi13095918) 6e-16 Click
4035888..36088 cold shock-like protein cspI; EC182770_0046 0.0 Click
41complement(36619..37260) PHAGE_Entero_mEp460: late gene regulator; EC182770_0047; phage(gi428782366) 6e-92 Click
42complement(37274..38110) PHAGE_Entero_SfV: hypothetical protein SfVp45; EC182770_0048; phage(gi19549032) 3e-94 Click
43complement(38107..38226) conserved hypothetical protein; EC182770_0049 0.0 Click
44complement(38669..38917) uncharacterized protein rem; EC182770_0050 0.0 Click
45complement(38982..39098) conserved hypothetical protein; EC182770_0051 0.0 Click
46complement(39651..39890) antitoxin RelB; EC182770_0052 0.0 Click
4740422..40739 protein flxA; EC182770_0053 0.0 Click
48complement(41189..42529) integrase core domain protein; EC182770_0054 0.0 Click
4952331..52343 attR    AGCTTTTCATCGA 0.0 Click

Region 2, total : 44 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11388535..1388548 attL    AACAAAAAACCCAT 0.0 Click
2complement(1389930..1390979) PHAGE_Entero_Fels_2: P2 Int-like protein; EC182770_1432; phage(gi169936064) 4e-99 Click
31392109..1392291 conserved hypothetical protein; EC182770_1433 0.0 Click
41392324..1392833 PHAGE_Entero_Fels_2: bacteriophage regulatory protein CII; EC182770_1434; phage(gi169936061) 3e-83 Click
51393012..1393137 hypothetical protein; EC182770_1435 0.0 Click
61393255..1393596 PHAGE_Entero_Fels_2: hypothetical protein STM2733.Fels2; EC182770_1436; phage(gi169936058) 1e-51 Click
71393664..1393897 PHAGE_Entero_Fels_2: hypothetical protein STM2732.Fels2; EC182770_1437; phage(gi169936057) 6e-28 Click
81393897..1394124 PHAGE_Entero_Fels_2: P2 gpOrf82-like protein; EC182770_1438; phage(gi169936056) 6e-35 Click
91394121..1394978 PHAGE_Entero_Fels_2: DNA adenine methylase-like protein; EC182770_1439; phage(gi169936055) 5e-118 Click
101394975..1397389 PHAGE_Entero_Fels_2: P2 gpA-like protein; EC182770_1440; phage(gi169936054) 0.0 Click
111397566..1397730 PHAGE_Entero_Fels_2: hypothetical protein STM2728.Fels2; EC182770_1441; phage(gi169936053) 7e-22 Click
121397901..1399061 hypothetical protein; EC182770_1442 0.0 Click
131399350..1400162 hypothetical protein; EC182770_1443 0.0 Click
14complement(1400207..1401232) PHAGE_Entero_Fels_2: P2 gpQ-like protein; EC182770_1444; phage(gi169936049) 2e-171 Click
15complement(1401232..1402998) PHAGE_Entero_Fels_2: P2 gpP-like protein; EC182770_1445; phage(gi169936048) 0.0 Click
161403141..1403974 PHAGE_Entero_Fels_2: P2 gpO-like protein; EC182770_1446; phage(gi169936047) 2e-131 Click
171403991..1405049 PHAGE_Entero_Fels_2: P2 gpN-like major capsid protein; EC182770_1447; phage(gi169936046) 3e-179 Click
181405053..1405703 PHAGE_Entero_Fels_2: P2 gpM-like protein; EC182770_1448; phage(gi169936045) 5e-113 Click
191405799..1406263 PHAGE_Entero_Fels_2: P2 gpL-like protein; EC182770_1449; phage(gi169936044) 9e-79 Click
201406263..1406466 PHAGE_Entero_Fels_2: P2 gpX-like tail protein; EC182770_1450; phage(gi169936043) 1e-32 Click
211406470..1406685 PHAGE_Entero_Fels_2: lysis protein; EC182770_1451; phage(gi169936042) 1e-28 Click
221406666..1407178 PHAGE_Entero_Fels_2: endolysin; EC182770_1452; phage(gi169936041) 1e-81 Click
231407180..1407557 putative membrane protein; EC182770_1453 0.0 Click
241407554..1407982 PHAGE_Entero_Fels_2: P2 LysB-like protein; EC182770_1454; phage(gi169936038) 2e-55 Click
251408078..1408509 PHAGE_Entero_Fels_2: P2 gpR-like tail completion protein; EC182770_1455; phage(gi169936036) 1e-71 Click
261408502..1408948 PHAGE_Entero_Fels_2: P2 gpS-like tail completion protein; EC182770_1456; phage(gi169936035) 5e-71 Click
271409017..1409595 PHAGE_Entero_Fels_2: P2 gpV-like protein; EC182770_1457; phage(gi169936034) 1e-95 Click
281409592..1409951 PHAGE_Entero_Fels_2: P2 gpW-like baseplate protein; EC182770_1458; phage(gi169936033) 2e-52 Click
291409938..1410846 PHAGE_Entero_Fels_2: P2 gpJ-like baseplate assembly protein; EC182770_1459; phage(gi169936032) 1e-147 Click
301410839..1411444 PHAGE_Entero_Fels_2: P2 gpI-like baseplate assembly protein; EC182770_1460; phage(gi169936031) 6e-109 Click
311411441..1412982 PHAGE_Entero_Fels_2: P2 gpH-like protein; EC182770_1461; phage(gi169936030) 3e-121 Click
321412982..1413584 PHAGE_Entero_HK106: tail fiber assembly protein; EC182770_1462; phage(gi428783304) 1e-96 Click
33complement(1413556..1413999) PHAGE_Entero_mEp213: tail fiber assembly protein; EC182770_1463; phage(gi428782612) 2e-25 Click
34complement(1414020..1414433) PHAGE_Erwini_ENT90: phage tail collar domain protein; EC182770_1464; phage(gi431810938) 1e-14 Click
351414461..1414814 PHAGE_Entero_Fels_2: DNA-invertase; EC182770_1465; phage(gi169936026) 4e-50 Click
36complement(1414984..1415124) hypothetical protein; EC182770_1466 0.0 Click
371415169..1415507 PHAGE_Entero_Fels_2: P2 gpFI-like protein; EC182770_1467; phage(gi169936025) 2e-51 Click
381415504..1416340 PHAGE_Entero_Fels_2: P2 gpFI-like protein; EC182770_1468; phage(gi169936025) 5e-146 Click
391416350..1416865 PHAGE_Entero_Fels_2: P2 gpFII-like protein; EC182770_1469; phage(gi169936024) 4e-91 Click
401416920..1417222 PHAGE_Entero_Fels_2: P2 gpE-like tail protein; EC182770_1470; phage(gi169936023) 3e-45 Click
411417237..1417356 PHAGE_Entero_Fels_2: P2 gpE-like protein; EC182770_1471; phage(gi169936022) 1e-14 Click
421417349..1420426 PHAGE_Entero_Fels_2: P2 gpT-like tail protein; EC182770_1472; phage(gi169936021) 0.0 Click
431420423..1420908 PHAGE_Entero_Fels_2: P2 gpU-like tail protein; EC182770_1473; phage(gi169936020) 9e-75 Click
441420905..1422005 PHAGE_Entero_Fels_2: P2 gpD-like tail protein; EC182770_1474; phage(gi169936019) 0.0 Click
451422096..1422314 PHAGE_Entero_Fels_2: P2 gpOgr-like protein (acttivation of late gene expression); EC182770_1475; phage(gi169936018) 2e-22 Click
461422392..1422405 attR    AACAAAAAACCCAT 0.0 Click

Region 3, total : 58 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11719696..1719708 attL    TATGGGCATATTT 0.0 Click
2complement(1725215..1725676) PHAGE_Vibrio_KVP40: NMN adenylyl tranferase; EC182770_1778; phage(gi34419395) 6e-05 Click
3complement(1725686..1726309) ribosomal large subunit pseudouridine synthase E; EC182770_1779 0.0 Click
41726511..1727761 isocitrate dehydrogenase, NADP-dependent; EC182770_1780 0.0 Click
5complement(1727875..1729017) PHAGE_Entero_mEp235: integrase; EC182770_1781; phage(gi428781836) 2e-61 Click
6complement(1729383..1729499) conserved hypothetical protein; EC182770_1782 0.0 Click
7complement(1729828..1729983) hypothetical protein; EC182770_1783 0.0 Click
8complement(1729986..1730201) PHAGE_Stx2_converting_I: hypothetical protein Stx2Ip098; EC182770_1784; phage(gi20065893) 6e-34 Click
9complement(1730278..1730391) PHAGE_Entero_HK630: hypothetical protein; EC182770_1785; phage(gi428782820) 9e-14 Click
10complement(1730621..1731145) PHAGE_Stx2_converting_1717: exonuclease; EC182770_1786; phage(gi209447136) 9e-100 Click
11complement(1731298..1732083) PHAGE_Stx2_converting_I: Bet protein; EC182770_1787; phage(gi20065900) 2e-151 Click
12complement(1732089..1732385) PHAGE_Stx2_converting_86: host-nuclease inhibitor protein Gam; EC182770_1788; phage(gi116222045) 1e-52 Click
13complement(1732461..1732667) PHAGE_Entero_HK225: Kil protein; EC182770_1789; phage(gi428782413) 7e-30 Click
14complement(1733757..1734278) PHAGE_Entero_ST104: CI; EC182770_1790; phage(gi46358671) 1e-79 Click
151734899..1735390 PHAGE_Entero_mEp237: CII protein; EC182770_1791; phage(gi435439306) 1e-58 Click
161735477..1736406 PHAGE_Stx2_converting_I: O protein; EC182770_1792; phage(gi20065919) 9e-112 Click
171736403..1737104 PHAGE_Entero_BP_4795: putative replication protein P; EC182770_1793; phage(gi157166012) 1e-129 Click
18complement(1737867..1739174) PHAGE_Clostr_phiCD6356: putative phage tail tape measure protein; EC182770_1794; phage(gi326536862) 3e-07 Click
191739288..1739301 attL    GCAATATTCTTATT 0.0 Click
201739521..1739532 attL    TGCAGAAATGCA 0.0 Click
211740211..1740573 PHAGE_Salmon_SPN3UB: hypothetical protein; EC182770_1795; phage(gi423262398) 5e-14 Click
221741066..1741317 hypothetical protein; EC182770_1796 0.0 Click
231741512..1741967 PHAGE_Cronob_phiES15: hypothetical protein; EC182770_1797; phage(gi401817579) 4e-62 Click
241742130..1742420 PHAGE_Entero_mEp237: hypothetical protein; EC182770_1798; phage(gi435439317) 5e-49 Click
251742417..1742779 PHAGE_Entero_mEp237: Holliday junction resolvase RusA; EC182770_1799; phage(gi435439318) 2e-61 Click
261743002..1743385 PHAGE_Entero_YYZ_2008: antitermination protein Q; EC182770_1800; phage(gi209427762) 7e-57 Click
27complement(1743575..1744657) outer membrane porin protein LC; EC182770_1801 0.0 Click
281745239..1745445 PHAGE_Entero_mEp460: porin; EC182770_1802; phage(gi428782370) 4e-33 Click
291745445..1745942 PHAGE_Stx2_converting_1717: phage-related lysozyme; EC182770_1803; phage(gi209447172) 2e-89 Click
30complement(1746316..1747155) PROPHAGE_Escher_MG1655: IS2 transposase TnpB; EC182770_1804; phage(gi16130763) 1e-165 Click
31complement(1747179..1747544) PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; EC182770_1805; phage(gi17546153) 2e-45 Click
321748754..1749245 PHAGE_Entero_mEp460: terminase small subunit; EC182770_1806; phage(gi428782317) 3e-73 Click
331749344..1751302 PHAGE_Entero_mEp460: terminase large subunit; EC182770_1807; phage(gi428782318) 0.0 Click
341751343..1751555 PHAGE_Entero_mEp460: hypothetical protein; EC182770_1808; phage(gi428782319) 5e-34 Click
351751555..1753063 PHAGE_Entero_mEp460: portal protein; EC182770_1809; phage(gi428782320) 0.0 Click
361753077..1755035 PHAGE_Entero_mEp460: putative protease/scaffold protein; EC182770_1810; phage(gi428782321) 0.0 Click
371755122..1755445 PHAGE_Entero_mEp460: hypothetical protein; EC182770_1811; phage(gi428782322) 4e-54 Click
381755438..1755713 PHAGE_Entero_mEp460: hypothetical protein; EC182770_1812; phage(gi428782323) 5e-47 Click
391755725..1756303 PHAGE_Entero_mEp460: minor tail protein; EC182770_1813; phage(gi428782324) 9e-105 Click
401756300..1756701 PHAGE_Entero_mEp460: minor tail protein; EC182770_1814; phage(gi428782325) 8e-74 Click
411756713..1757456 PHAGE_Entero_mEp460: major tail protein; EC182770_1815; phage(gi428782326) 4e-137 Click
421757517..1757903 PHAGE_Entero_mEp460: minor tail protein; EC182770_1816; phage(gi428782327) 1e-64 Click
431757912..1758241 PHAGE_Entero_mEp460: tail assembly protein; EC182770_1817; phage(gi428782328) 6e-59 Click
441758213..1760165 PHAGE_Entero_mEp460: tail length tape measure protein; EC182770_1818; phage(gi428782329) 0.0 Click
451760162..1760362 PHAGE_Entero_mEp460: tail length tape measure protein; EC182770_1819; phage(gi428782329) 6e-27 Click
461760431..1761276 PHAGE_Entero_mEp460: tail length tape measure protein; EC182770_1820; phage(gi428782329) 8e-158 Click
471761276..1761605 PHAGE_Entero_mEp460: minor tail protein; EC182770_1821; phage(gi428782330) 1e-60 Click
48complement(1761719..1761868) conserved hypothetical protein; EC182770_1822 0.0 Click
491761872..1762312 PHAGE_Entero_mEp460: minor tail protein; EC182770_1823; phage(gi428782331) 7e-83 Click
501762485..1762496 attR    TGCAGAAATGCA 0.0 Click
511762590..1763060 PHAGE_Entero_mEp460: tail fiber component; EC182770_1824; phage(gi428782332) 5e-87 Click
521763057..1763605 PHAGE_Entero_mEp460: tail assembly protein; EC182770_1825; phage(gi428782333) 3e-99 Click
531763666..1763794 PHAGE_Entero_mEp460: host specificity protein; EC182770_1826; phage(gi428782334) 3e-16 Click
54complement(1764032..1764781) PHAGE_Celeri_P12053L: putative phage tail fiber protein; EC182770_1827; phage(gi399528893) 5e-12 Click
551764805..1764939 hypothetical protein; EC182770_1828 0.0 Click
561764900..1767197 PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; EC182770_1829; phage(gi16129506) 5e-106 Click
571767197..1767604 PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; EC182770_1830; phage(gi16129505) 8e-75 Click
581767604..1767771 PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; EC182770_1831; phage(gi16129505) 5e-25 Click
59complement(1767869..1768459) PHAGE_Escher_D108: G region invertase; EC182770_1832; phage(gi281199698) 7e-25 Click
601769792..1771075 PHAGE_Burkho_phi1026b: gp59; EC182770_1833; phage(gi38707949) 1e-33 Click
611771164..1772624 PHAGE_Microm_MpV1: hypothetical protein; EC182770_1834; phage(gi313768442) 4e-41 Click
62complement(1772659..1772862) PHAGE_Salmon_SSU5: putative selenium-binding protein YdfZ; EC182770_1835; phage(gi390013937) 1e-13 Click
631777502..1777515 attR    GCAATATTCTTATT 0.0 Click
641785457..1785469 attR    TATGGGCATATTT 0.0 Click