Pseudomonas syringae pv. tomato K40 , whole genome shotgun [asmbl_id: NC_000000].6153658, GC%: 58.61%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 19 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(550148..550972) PROPHAGE_Xylell_Temecula1: phage-related integrase; PP_00536; phage(gi28198969) 9e-57 Click
2complement(551832..552122) PHAGE_Vibrio_VvAW1: hypothetical protein; PP_00537; phage(gi460042912) 8e-15 Click
3complement(552172..552414) prophage PSPPH01 transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71734490|ref|YP_272950.1|; PP_00538 1e-24 Click
4complement(552782..553057) hypothetical protein A458_06815 [Pseudomonas stutzeri CCUG 29243] gi|392420428|ref|YP_006457032.1|; PP_00539 5e-24 Click
5complement(553068..553640) PHAGE_Acanth_mimivirus: putative deoxynucleotide monophosphate kinase; PP_00540; phage(gi311977904) 1e-21 Click
6complement(553637..553831) hypothetical protein A458_06830 [Pseudomonas stutzeri CCUG 29243] gi|392420431|ref|YP_006457035.1|; PP_00541 3e-08 Click
7complement(553908..554090) hypothetical; PP_00542 0.0 Click
8complement(554343..555059) PHAGE_Pseudo_phi297: putative phage repressor; PP_00543; phage(gi374531272) 3e-19 Click
9555612..556100 hypothetical protein PputGB1_1190 [Pseudomonas putida GB-1] gi|167032203|ref|YP_001667434.1|; PP_00544 3e-57 Click
10556504..556515 attL    GTCGGGTGTGTT 0.0 Click
11556554..558989 PHAGE_Stenot_S1: putative primase; PP_00545; phage(gi213163899) 4e-52 Click
12559006..559017 attR    GTCGGGTGTGTT 0.0 Click
13559318..559815 hypothetical protein PSPPH_0654 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71734734|ref|YP_272953.1|; PP_00546 2e-32 Click
14560051..560374 PHAGE_Entero_SfV: holin; PP_00547; phage(gi19549036) 2e-14 Click
15560371..560757 PHAGE_Pseudo_phiCTX: predicted lysis; PP_00548; phage(gi17313230) 3e-08 Click
16560729..560905 hypothetical protein PSPTO_3414 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870578|ref|NP_793197.1|; PP_00549 1e-19 Click
17561132..561701 hypothetical protein PSPTO_3413 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870577|ref|NP_793196.1|; PP_00550 1e-100 Click
18561736..563736 PHAGE_Stenot_S1: putative terminase large subunit; PP_00551; phage(gi213163902) 3e-94 Click
19563738..563944 hypothetical protein PSPTO_3411 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870575|ref|NP_793194.1|; PP_00552 7e-31 Click
20563995..565422 PHAGE_Stenot_S1: putative portal protein; PP_00553; phage(gi213163905) 9e-61 Click
21565419..566570 PHAGE_Entero_mEp213: head maturation protease; PP_00554; phage(gi428782594) 6e-42 Click

Region 2, total : 38 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1623263..623274 attL    GCTTGAACGGCT 0.0 Click
2633145..633801 PHAGE_Cronob_phiES15: putative major tail protein; PP_00618; phage(gi401817602) 3e-31 Click
3633805..634188 PHAGE_Cronob_phiES15: hypothetical protein; PP_00619; phage(gi401817603) 5e-06 Click
4634251..634499 PHAGE_Cronob_phiES15: hypothetical protein; PP_00620; phage(gi401817604) 1e-08 Click
5634510..637995 PHAGE_Pseudo_MP29: putative tail component protein; PP_00621; phage(gi215480016) 0.0 Click
6637998..638336 PHAGE_Entero_mEpX2: minor tail protein; PP_00622; phage(gi428765629) 4e-26 Click
7638346..639095 PHAGE_Entero_mEp237: minor tail protein L; PP_00623; phage(gi435439282) 7e-74 Click
8639098..639862 PHAGE_Entero_mEp235: minor tail protein K; PP_00624; phage(gi428781828) 2e-67 Click
9complement(639884..640495) PHAGE_Vibrio_CTX: RstR; PP_00625; phage(gi332672299) 4e-06 Click
10640974..641123 PHAGE_Vibrio_VHML: ORF48; PP_00626; phage(gi27311215) 8e-06 Click
11complement(641178..642410) PHAGE_Pseudo_phiCTX: integrase; PP_00627; phage(gi17313264) 1e-72 Click
12complement(642407..642622) putative phage excisionase [Shewanella baltica OS678] gi|378708317|ref|YP_005273211.1|; PP_00628 2e-15 Click
13complement(642692..643417) PHAGE_Pseudo_F10: Putative metallophosphoesterase; PP_00629; phage(gi148912821) 2e-60 Click
14complement(643479..643667) hypothetical protein PSPTO_4055 [Pseudomonas syringae pv. tomato str. DC3000] gi|28871198|ref|NP_793817.1|; PP_00630 2e-22 Click
15complement(643664..643978) PHAGE_Burkho_phi1026b: gp46; PP_00631; phage(gi38707936) 6e-12 Click
16complement(644033..644191) hypothetical; PP_00632 0.0 Click
17complement(644188..644316) hypothetical protein Pput_4142 [Pseudomonas putida F1] gi|148549348|ref|YP_001269450.1|; PP_00633 7e-10 Click
18complement(644367..645281) hypothetical protein SerAS9_3448 [Serratia plymuthica AS9] gi|333933240|ref|YP_004506818.1|; PP_00634 1e-19 Click
19complement(645278..645865) PHAGE_Burkho_AH2: hypothetical protein; PP_00635; phage(gi399529057) 3e-16 Click
20complement(645881..647377) PHAGE_Vibrio_CP_T1: putative methylase; PP_00636; phage(gi418489199) 2e-86 Click
21complement(647423..648715) PHAGE_Mycoba_Wee: gp78; PP_00637; phage(gi318065865) 3e-50 Click
22complement(648778..649356) hypothetical protein Pput_4138 [Pseudomonas putida F1] gi|148549344|ref|YP_001269446.1|; PP_00638 1e-49 Click
23complement(650018..650638) PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PP_00639; phage(gi374531713) 2e-11 Click
24complement(650668..650979) hypothetical protein PSPPH_2146 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71734486|ref|YP_274364.1|; PP_00640 3e-51 Click
25complement(650970..651317) PHAGE_Pseudo_phi297: hypothetical protein; PP_00641; phage(gi374531245) 3e-08 Click
26complement(651405..651593) hypothetical; PP_00642 0.0 Click
27complement(652095..652586) PHAGE_Xantho_vB_XveM_DIBBI: single-stranded DNA-binding protein; PP_00643; phage(gi389060431) 6e-51 Click
28complement(652583..653449) PHAGE_Myxoco_Mx8: hypothetical protein Mx8p81; PP_00644; phage(gi15320651) 5e-45 Click
29complement(653458..653601) hypothetical; PP_00645 0.0 Click
30complement(653609..654772) PHAGE_Iodoba_phiPLPE: gp77 putative tail-fiber protein; PP_00646; phage(gi197085691) 3e-48 Click
31complement(654829..654945) hypothetical; PP_00647 0.0 Click
32complement(654942..655151) hypothetical protein PSEBR_a3839 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|330810764|ref|YP_004355226.1|; PP_00648 3e-22 Click
33complement(655148..655705) PHAGE_Pseudo_D3: Orf65; PP_00649; phage(gi9635656) 3e-17 Click
34complement(655702..655953) hypothetical; PP_00650 0.0 Click
35complement(655950..656192) hypothetical; PP_00651 0.0 Click
36complement(656210..656392) hypothetical; PP_00652 0.0 Click
37complement(656413..656673) PHAGE_Burkho_DC1: hypothetical protein; PP_00653; phage(gi401723044) 2e-08 Click
38complement(657319..657468) hypothetical; PP_00654 0.0 Click
39complement(657552..657839) PHAGE_Burkho_BcepNazgul: hypothetical protein Nazgul23; PP_00655; phage(gi34610132) 1e-27 Click
40661394..661405 attR    GCTTGAACGGCT 0.0 Click

Region 3, total : 13 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12425808..2425822 attL    ATCACTGCGTACGCG 0.0 Click
2complement(2432744..2433715) PHAGE_Haemop_HP2: orf35; PP_02267; phage(gi17981851) 2e-57 Click
3complement(2433688..2434398) PHAGE_Haemop_HP2: orf35; PP_02268; phage(gi17981851) 6e-19 Click
4complement(2434395..2434931) PHAGE_Haemop_HP2: orf34; PP_02269; phage(gi17981850) 6e-19 Click
5complement(2434928..2435860) PHAGE_Haemop_HP2: orf33; PP_02270; phage(gi17981849) 8e-07 Click
6complement(2435850..2436350) PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp23; PP_02271; phage(gi17313240) 2e-08 Click
7complement(2436347..2438689) PHAGE_Haemop_HP2: tail fibers; PP_02272; phage(gi17981847) 2e-50 Click
8complement(2438698..2439222) PHAGE_Haemop_HP2: orf30; PP_02273; phage(gi17981846) 2e-43 Click
9complement(2439219..2440388) PHAGE_Haemop_HP2: orf29; PP_02274; phage(gi17981845) 1e-92 Click
10complement(2440822..2442108) PHAGE_Burkho_AH2: integrase; PP_02275; phage(gi399529076) 8e-98 Click
112442144..2443082 yjbN family TIM-barrel protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28869329|ref|NP_791948.1|; PP_02276 2e-179 Click
122443197..2443628 universal stress protein family [Pseudomonas syringae pv. tomato str. DC3000] gi|28869330|ref|NP_791949.1|; PP_02277 1e-74 Click
13complement(2443655..2444119) PHAGE_Feldma_virus: putative sensor histidine kinase; PP_02278; phage(gi197322366) 7e-06 Click
14complement(2444116..2446443) PHAGE_Ectoca_1: EsV-1-65; PP_02279; phage(gi13242537) 3e-29 Click
152453017..2453031 attR    ATCACTGCGTACGCG 0.0 Click

Region 4, total : 28 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12695698..2695714 attL    CGCCAGCAGCGCGGCTT 0.0 Click
22702139..2704061 PHAGE_Singap_iridovirus: hypothetical protein ORF141R; PP_02502; phage(gi56692778) 1e-07 Click
3complement(2704118..2704411) PHAGE_Haemop_HP2: orf28; PP_02503; phage(gi17981844) 9e-19 Click
4complement(2704411..2706780) PHAGE_Haemop_HP2: orf27; PP_02504; phage(gi17981843) 2e-87 Click
5complement(2706786..2706953) hypothetical protein PSPPH_4958 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71734141|ref|YP_277044.1|; PP_02505 5e-19 Click
6complement(2706950..2707240) PHAGE_Haemop_HP2: orf26; PP_02506; phage(gi17981842) 6e-06 Click
7complement(2707750..2708277) PHAGE_Entero_RTP: putative endolysin; PP_02507; phage(gi81343992) 3e-12 Click
8complement(2708274..2708480) hypothetical; PP_02508 0.0 Click
9complement(2708480..2708689) PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p11; PP_02509; phage(gi109289947) 2e-06 Click
10complement(2708689..2709141) PHAGE_Haemop_HP2: tail tube; PP_02510; phage(gi17981838) 3e-33 Click
11complement(2709145..2710257) PHAGE_Haemop_HP2: tail sheath; PP_02511; phage(gi17981837) 2e-75 Click
12complement(2710272..2710940) PHAGE_Haemop_HP2: orf22; PP_02512; phage(gi17981836) 2e-13 Click
13complement(2710930..2711373) PHAGE_Haemop_HP2: orf21; PP_02513; phage(gi17981835) 2e-08 Click
14complement(2711370..2711831) PHAGE_Haemop_HP2: packaging protein; PP_02514; phage(gi17981834) 1e-17 Click
15complement(2712303..2713025) PHAGE_Haemop_HP2: packaging protein; PP_02515; phage(gi17981833) 2e-25 Click
16complement(2713022..2714044) PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; PP_02516; phage(gi145708082) 2e-74 Click
17complement(2714046..2714969) PHAGE_Haemop_HP2: scaffold; PP_02517; phage(gi17981831) 9e-29 Click
182715131..2717185 PHAGE_Vibrio_kappa: putative terminase ATPase subunit; PP_02518; phage(gi165970256) 2e-161 Click
192717220..2717963 PHAGE_Aeromo_phiO18P: putative portal protein; PP_02519; phage(gi148727149) 1e-58 Click
202718159..2718299 hypothetical; PP_02520 0.0 Click
212719087..2719287 PHAGE_Burkho_BcepMu: gp16; PP_02521; phage(gi48696926) 1e-06 Click
222719419..2719796 PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp36; PP_02522; phage(gi17313253) 2e-32 Click
232719793..2720155 hypothetical protein PputUW4_01235 [Pseudomonas sp. UW4] gi|426408148|ref|YP_007028247.1|; PP_02523 2e-12 Click
242720228..2720467 PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp39; PP_02524; phage(gi17313256) 3e-05 Click
252720464..2723157 PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; PP_02525; phage(gi17313257) 0.0 Click
262723456..2723575 hypothetical; PP_02526 0.0 Click
272723720..2723881 hypothetical protein PSPPH_4972 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71735147|ref|YP_277057.1|; PP_02527 6e-11 Click
282723958..2724170 hypothetical; PP_02528 0.0 Click
292724167..2725318 PROPHAGE_Xantho_306: phage-related integrase; PP_02529; phage(gi21243357) 3e-74 Click
302737802..2737818 attR    CGCCAGCAGCGCGGCTT 0.0 Click

Region 5, total : 41 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(3546087..3546980) PHAGE_Burkho_phi1026b: gp58; PP_03318; phage(gi38707948) 3e-06 Click
23547097..3548353 major facilitator superfamily protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28872225|ref|NP_794844.1|; PP_03319 0.0 Click
3complement(3548350..3548484) hypothetical; PP_03320 0.0 Click
43549289..3549615 PHAGE_Burkho_KS9: hypothetical protein gp32; PP_03321; phage(gi255033715) 4e-14 Click
53549584..3549700 hypothetical protein PSPTO_5113 [Pseudomonas syringae pv. tomato str. DC3000] gi|28872226|ref|NP_794845.1|; PP_03322 1e-11 Click
63549697..3549849 hypothetical protein PSPTO_5114 [Pseudomonas syringae pv. tomato str. DC3000] gi|28872227|ref|NP_794846.1|; PP_03323 7e-21 Click
73549956..3550165 hypothetical protein PSPTO_5114 [Pseudomonas syringae pv. tomato str. DC3000] gi|28872227|ref|NP_794846.1|; PP_03324 5e-30 Click
8complement(3550501..3550911) PHAGE_Escher_HK639: hypothetical protein; PP_03325; phage(gi356870611) 6e-16 Click
9complement(3550908..3551564) PHAGE_Shigel_EP23: putative tail protein; PP_03326; phage(gi371496282) 7e-18 Click
10complement(3551561..3551929) PHAGE_Cyanop_KBS_S_2A: hypothetical protein; PP_03327; phage(gi472341510) 5e-12 Click
11complement(3551946..3552446) PHAGE_Pseudo_73: hypothetical protein ORF013; PP_03328; phage(gi148912841) 7e-14 Click
12complement(3552450..3552899) hypothetical protein Psyr_2788 [Pseudomonas syringae pv. syringae B728a] gi|66046024|ref|YP_235865.1|; PP_03329 1e-79 Click
13complement(3552924..3553874) PHAGE_Pseudo_73: hypothetical protein ORF010; PP_03330; phage(gi148912838) 1e-27 Click
14complement(3553887..3554657) PHAGE_Xantho_Xp15: putative phage structural protein; PP_03331; phage(gi66392059) 4e-20 Click
15complement(3554697..3555782) PHAGE_Salmon_SETP3: head morphogenesis protein; PP_03332; phage(gi134288594) 1e-52 Click
16complement(3555757..3557178) PHAGE_Pseudo_73: hypothetical protein ORF007; PP_03333; phage(gi148912835) 3e-71 Click
17complement(3557175..3558476) PHAGE_Pseudo_H105/1: phage terminase large subunit; PP_03334; phage(gi327198525) 5e-106 Click
18complement(3558463..3558924) PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; PP_03335; phage(gi399528759) 9e-41 Click
19complement(3559035..3559256) HNH endonuclease [Gramella forsetii KT0803] gi|120436764|ref|YP_862450.1|; PP_03336 3e-05 Click
20complement(3559556..3560188) PHAGE_Cronob_ENT47670: putative transposase; PP_03337; phage(gi431810514) 1e-69 Click
21complement(3560145..3560624) PHAGE_Pseudo_KPP10: hypothetical protein; PP_03338; phage(gi327198153) 5e-19 Click
22complement(3560633..3560830) hypothetical protein PflA506_2045 [Pseudomonas fluorescens A506] gi|387893235|ref|YP_006323532.1|; PP_03339 9e-10 Click
23complement(3560994..3561224) PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; PP_03340; phage(gi414087356) 4e-15 Click
24complement(3561280..3561618) PHAGE_Erwini_PEp14: hypothetical protein; PP_03341; phage(gi374531878) 2e-05 Click
25complement(3561618..3561989) PHAGE_Erwini_PEp14: holin; PP_03342; phage(gi374531877) 1e-08 Click
26complement(3562611..3563036) PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PP_03343; phage(gi374531730) 8e-30 Click
27complement(3563153..3563743) PHAGE_Pseudo_PAJU2: putative NinG; PP_03344; phage(gi209552490) 1e-65 Click
28complement(3563734..3564048) PHAGE_Pseudo_D3: Orf80; PP_03345; phage(gi9635668) 2e-08 Click
29complement(3564045..3564515) hypothetical protein PSEBR_a3829 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|330810747|ref|YP_004355209.1|; PP_03346 4e-62 Click
30complement(3564508..3565284) hypothetical; PP_03347 0.0 Click
31complement(3565281..3565604) PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp70; PP_03348; phage(gi209552489) 2e-26 Click
32complement(3565601..3566059) hypothetical protein PP_3916 [Pseudomonas putida KT2440] gi|26990621|ref|NP_746046.1|; PP_03349 3e-11 Click
33complement(3566056..3566244) PHAGE_Escher_TL_2011b: hypothetical protein; PP_03350; phage(gi418487639) 1e-07 Click
34complement(3566241..3566501) PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp39; PP_03351; phage(gi209552458) 2e-06 Click
35complement(3566498..3566728) hypothetical; PP_03352 0.0 Click
36complement(3566728..3567546) PHAGE_Entero_mEpX1: putative replication protein DnaC; PP_03353; phage(gi428781919) 4e-36 Click
37complement(3567536..3568330) PHAGE_Azospi_Cd: hypothetical protein APCd_gp15; PP_03354; phage(gi168495118) 6e-13 Click
38complement(3568327..3568488) hypothetical; PP_03355 0.0 Click
393568513..3569592 lectin repeat domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28870073|ref|NP_792692.1|; PP_03356 0.0 Click
40complement(3569819..3570838) PHAGE_Strept_6: minor tail protein; PP_03357; phage(gi93007453) 4e-05 Click
41complement(3571167..3572771) PHAGE_Ectoca_1: EsV-1-112; PP_03358; phage(gi13242583) 7e-10 Click

Region 6, total : 19 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
15898371..5900386 PHAGE_Acidia_9: putative helicase; PP_05591; phage(gi171473669) 4e-05 Click
25900938..5902419 glutamyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] gi|28869369|ref|NP_791988.1|; PP_05592 0.0 Click
35902569..5902644 tRNA 0.0 Click
45902748..5903266 levansucrase [Pseudomonas syringae pv. tomato str. DC3000] gi|28868660|ref|NP_791279.1|; PP_05593 6e-56 Click
55903298..5904296 PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; PP_05594; phage(gi134287370) 3e-22 Click
65904417..5905496 PHAGE_Cotesi_bracovirus: hypothetical protein CcBVs18gp3; PP_05595; phage(gi57753381) 5e-06 Click
75905567..5905935 PROPHAGE_Xylell_Temecula1: contractile tail sheath protein; PP_05596; phage(gi28198986) 4e-30 Click
85905948..5906457 PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PP_05597; phage(gi428782747) 9e-35 Click
95906474..5906776 hypothetical protein PSPTO_3394 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870558|ref|NP_793177.1|; PP_05598 8e-46 Click
10complement(5906786..5906902) hypothetical; PP_05599 0.0 Click
115906915..5909653 PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; PP_05600; phage(gi418489066) 2e-26 Click
125909663..5910694 hypothetical protein PSPTO_3392 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870556|ref|NP_793175.1|; PP_05601 1e-69 Click
135910678..5911937 PHAGE_Mycoba_Myrna: gp183; PP_05602; phage(gi203454746) 7e-06 Click
145911974..5912630 hypothetical protein XALc_0845 [Xanthomonas albilineans GPE PC73] gi|285017640|ref|YP_003375351.1|; PP_05603 9e-90 Click
155912627..5913208 hypothetical protein XALc_0844 [Xanthomonas albilineans GPE PC73] gi|285017639|ref|YP_003375350.1|; PP_05604 6e-53 Click
165913213..5913485 PHAGE_Clostr_phiCTP1: putative helicase; PP_05605; phage(gi304360695) 2e-12 Click
17complement(5914719..5914844) hypothetical; PP_05606 0.0 Click
185914932..5915084 PROPHAGE_Pseudo_KT2440: transposase, putative; PP_05607; phage(gi26991145) 1e-06 Click
19complement(5916397..5916690) PHAGE_Pseudo_F116: nucleoid-associated protein; PP_05608; phage(gi56692913) 1e-29 Click
205917083..5917364 PHAGE_Rhodov_RS1: DNA-binding protein HU-beta; PP_05609; phage(gi472342891) 2e-13 Click
21complement(5917398..5919995) PHAGE_Invert_6: 261R; PP_05610; phage(gi15078973) 8e-16 Click