Lactobacillus gasseri 224-1 whole genome shotgun [asmbl_id: NC_000000].2005522, GC%: 35.03%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 28 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1220893..220904 attL    ATCTAAAAAATA 0.0 Click
2224948..225991 PROPHAGE_Escher_CFT073: transposase; HMPREF9209_1268; phage(gi26246249) 1e-37 Click
3225988..226170 conserved hypothetical protein; HMPREF9209_1269 0.0 Click
4226298..226534 PHAGE_Lactob_phiadh: hypothetical protein phiadhp10; HMPREF9209_1270; phage(gi9633010) 3e-27 Click
5226713..226934 conserved domain protein; HMPREF9209_1271 0.0 Click
6complement(226949..227221) conserved hypothetical protein; HMPREF9209_1272 0.0 Click
7complement(227422..227643) PHAGE_Lactob_phiadh: hypothetical protein phiadhp08; HMPREF9209_1273; phage(gi9633008) 2e-32 Click
8complement(227667..228392) PHAGE_Strept_1: hypothetical protein SpyM3_0687; HMPREF9209_1274; phage(gi28876152) 5e-47 Click
9complement(228603..228791) conserved domain protein; HMPREF9209_1275 0.0 Click
10complement(228811..229014) PHAGE_Lactoc_bIL312: repressor; HMPREF9209_1276; phage(gi13095896) 3e-08 Click
11229244..229585 PHAGE_Lactob_phiadh: Rad protein; HMPREF9209_1277; phage(gi9633005) 2e-18 Click
12229601..230002 PHAGE_Lactob_phiadh: hypothetical protein phiadhp04; HMPREF9209_1278; phage(gi9633004) 6e-44 Click
13230034..230240 hypothetical protein; HMPREF9209_1279 0.0 Click
14230258..230938 PHAGE_Lactob_1: Ci-like repressor; HMPREF9209_1280; phage(gi219563222) 1e-30 Click
15230956..231651 PHAGE_Strept_1: hypothetical protein EJ-1p09; HMPREF9209_1282; phage(gi39653683) 5e-13 Click
16complement(231633..231863) hypothetical protein; HMPREF9209_1281 0.0 Click
17232710..233690 PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; HMPREF9209_1283; phage(gi134287370) 2e-11 Click
18234031..234258 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1464; HMPREF9209_1284; phage(gi41179289) 9e-05 Click
19234396..234632 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1464; HMPREF9209_1285; phage(gi41179289) 1e-16 Click
20234652..234984 PHAGE_Lactob_LF1: hypothetical protein; HMPREF9209_1286; phage(gi418489416) 2e-18 Click
21complement(235378..235530) conserved domain protein; HMPREF9209_1287 0.0 Click
22236160..236816 PHAGE_Lactob_phiadh: integrase; HMPREF9209_1288; phage(gi9633001) 6e-111 Click
23236831..237316 PHAGE_Lactob_phiadh: integrase; HMPREF9209_1289; phage(gi9633001) 3e-89 Click
24237568..237795 conserved domain protein; HMPREF9209_1290 0.0 Click
25237888..238697 putative membrane protein; HMPREF9209_1291 0.0 Click
26complement(238739..239329) Fic family protein; HMPREF9209_1292 0.0 Click
27complement(239322..239579) conserved hypothetical protein; HMPREF9209_1293 0.0 Click
28complement(239582..239740) conserved domain protein; HMPREF9209_1294 0.0 Click
29complement(239879..240532) PHAGE_Parame_FR483: hypothetical protein FR483_N035R; HMPREF9209_1295; phage(gi155370133) 3e-37 Click
30246336..246347 attR    ATCTAAAAAATA 0.0 Click

Region 2, total : 57 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1524920..527580 PHAGE_Bacill_SP10: DNA polymerase; HMPREF9209_0307; phage(gi418489633) 6e-61 Click
2527596..528426 PHAGE_Bacill_SP10: formamidopyrimidine-DNA glycosylase; HMPREF9209_0308; phage(gi418489574) 6e-27 Click
3528423..529019 dephospho-CoA kinase; HMPREF9209_0309 0.0 Click
4529022..529039 attL    AAAATTGGAATGTCCAAA 0.0 Click
5complement(529133..530257) PHAGE_Lactob_Lj965: putative integrase; HMPREF9209_0310; phage(gi41179218) 2e-89 Click
6complement(530444..530647) PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp18; HMPREF9209_0311; phage(gi90592654) 4e-08 Click
7complement(530722..531096) conserved domain protein; HMPREF9209_0312 0.0 Click
8complement(531248..531631) hypothetical protein; HMPREF9209_0313 0.0 Click
9complement(531722..532330) PHAGE_Lactob_Lrm1: CI-like repressor; HMPREF9209_0314; phage(gi195661226) 3e-26 Click
10532478..532720 PHAGE_Strept_Sfi21: cro-repressor; HMPREF9209_0315; phage(gi9632966) 9e-11 Click
11532717..533505 PHAGE_Lactob_Lj965: putative antirepressor; HMPREF9209_0316; phage(gi41179234) 3e-57 Click
12533519..533803 hypothetical protein; HMPREF9209_0317 0.0 Click
13533951..534103 PHAGE_Lactob_Lj928: putative recombination protein; HMPREF9209_0318; phage(gi41179302) 3e-15 Click
14534134..535024 PHAGE_Lactob_Lj965: hypothetical protein Ljo_0298; HMPREF9209_0319; phage(gi41179230) 2e-71 Click
15535027..535830 PHAGE_Lactob_Lj965: putative replication protein; HMPREF9209_0320; phage(gi41179231) 2e-17 Click
16535952..536542 PHAGE_Lactob_Lj965: putative replication protein; HMPREF9209_0321; phage(gi41179232) 2e-34 Click
17536574..536816 PHAGE_Lactob_Lj965: hypothetical protein Ljo_0301; HMPREF9209_0322; phage(gi41179233) 2e-44 Click
18536806..537108 hypothetical protein; HMPREF9209_0323 0.0 Click
19537606..537992 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1445; HMPREF9209_0324; phage(gi41179308) 1e-58 Click
20538010..538279 PHAGE_Lactob_phiadh: hypothetical protein phiadhp26; HMPREF9209_0325; phage(gi9633026) 1e-06 Click
21538596..538757 hypothetical protein; HMPREF9209_0326 0.0 Click
22538754..539215 PHAGE_Lactob_Lj771: holliday junction resolvase; HMPREF9209_0327; phage(gi163932172) 5e-82 Click
23539296..539433 conserved hypothetical protein; HMPREF9209_0328 0.0 Click
24539492..539626 PHAGE_Lactob_Lj771: hypothetical protein LJ771_024; HMPREF9209_0329; phage(gi163932176) 2e-11 Click
25539649..539840 hypothetical protein; HMPREF9209_0330 0.0 Click
26539856..540353 PHAGE_Lactob_Lj965: hypothetical protein Ljo_0303; HMPREF9209_0331; phage(gi41179235) 2e-06 Click
27541127..541201 tRNA 0.0 Click
28541232..541618 PHAGE_Crocei_P2559S: hypothetical protein; HMPREF9209_0333; phage(gi399528698) 5e-05 Click
29541738..542391 PHAGE_Riemer_RAP44: adenine nucleotide alpha hydrolase-like protein; HMPREF9209_0334; phage(gi418489897) 2e-20 Click
30542403..542900 hypothetical protein; HMPREF9209_0335 0.0 Click
31542903..543616 PHAGE_Riemer_RAP44: ParB-like nuclease; HMPREF9209_0336; phage(gi418489898) 2e-24 Click
32543617..543754 hypothetical protein; HMPREF9209_0337 0.0 Click
33543770..544447 PHAGE_Entero_phiFL4A: terminase small subunit; HMPREF9209_0338; phage(gi281416464) 4e-31 Click
34544413..545720 PHAGE_Lactob_H: putative terminase large subunit; HMPREF9209_0339; phage(gi148750837) 1e-167 Click
35545733..547367 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0340; phage(gi23455800) 9e-111 Click
36547318..548364 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0341; phage(gi23455801) 8e-75 Click
37548557..549186 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0342; phage(gi23455803) 6e-27 Click
38549191..550243 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0343; phage(gi23455804) 4e-103 Click
39550262..550651 PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp42; HMPREF9209_0344; phage(gi56694910) 1e-10 Click
40550645..550995 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0345; phage(gi23455805) 3e-23 Click
41551038..551376 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0346; phage(gi23455806) 7e-18 Click
42551369..551770 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0347; phage(gi23455807) 2e-15 Click
43551783..552019 hypothetical protein; HMPREF9209_0348 0.0 Click
44552031..552360 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF9209_0349; phage(gi23455808) 2e-14 Click
45552396..552824 hypothetical protein; HMPREF9209_0350 0.0 Click
46552829..553446 PHAGE_Lactob_phig1e: hypothetical protein phig1ep25; HMPREF9209_0351; phage(gi23455810) 4e-24 Click
47553450..558534 PHAGE_Strept_DT1: putative tail component protein; HMPREF9209_0352; phage(gi29165636) 5e-137 Click
48558527..559348 PHAGE_Staphy_StB20: tail protein; HMPREF9209_0353; phage(gi431809781) 5e-12 Click
49559363..560697 PHAGE_Lactob_phig1e: hypothetical protein phig1ep22; HMPREF9209_0354; phage(gi23455812) 7e-31 Click
50560747..561001 hypothetical protein; HMPREF9209_0355 0.0 Click
51561001..562371 PHAGE_Lactob_phiadh: hypothetical protein phiadhp56; HMPREF9209_0356; phage(gi9633056) 5e-82 Click
52562425..562919 PHAGE_Lactob_phiadh: hypothetical protein phiadhp57; HMPREF9209_0357; phage(gi9633057) 3e-42 Click
53562919..563131 PHAGE_Lactob_phiadh: hypothetical protein phiadhp58; HMPREF9209_0358; phage(gi9633058) 8e-12 Click
54563106..563228 hypothetical protein; HMPREF9209_0359 0.0 Click
55563574..563690 hypothetical protein; HMPREF9209_0360 0.0 Click
56563703..563888 hypothetical protein; HMPREF9209_0361 0.0 Click
57563881..564075 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1420; HMPREF9209_0362; phage(gi41179335) 2e-22 Click
58564075..564512 PHAGE_Lactob_Lj965: putative holin; HMPREF9209_0363; phage(gi41179254) 3e-07 Click
59564550..565494 PHAGE_Lactob_Lj965: putative lysin; HMPREF9209_0364; phage(gi41179263) 2e-108 Click
60567551..567568 attR    AAAATTGGAATGTCCAAA 0.0 Click

Region 3, total : 75 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1702523..702537 attL    GGAGAAAAAATGAAA 0.0 Click
2complement(712753..713976) PROPHAGE_Escher_CFT073: transposase; HMPREF9209_0554; phage(gi26246249) 6e-50 Click
3714130..715131 N-6 DNA Methylase; HMPREF9209_0555 0.0 Click
4715158..716357 acetate kinase; HMPREF9209_0556 0.0 Click
5716414..716776 tRNA 0.0 Click
6716697..716709 attL    AAGTTTAAGTAAT 0.0 Click
7complement(716849..717439) PHAGE_Lactob_Sha1: phage integrase; HMPREF9209_0558; phage(gi418489824) 2e-44 Click
8717453..717465 attR    AAGTTTAAGTAAT 0.0 Click
9complement(717525..717956) PHAGE_Lactob_LF1: phage integrase; HMPREF9209_0559; phage(gi418489411) 4e-20 Click
10complement(718165..718410) PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0560; phage(gi90592577) 1e-37 Click
11complement(718494..718649) PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0561; phage(gi90592577) 5e-11 Click
12complement(718710..718994) PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0562; phage(gi90592578) 5e-48 Click
13complement(719168..719512) PHAGE_Lactob_KC5a: putative transcriptional regulator; HMPREF9209_0563; phage(gi90592579) 6e-23 Click
14719682..719915 PHAGE_Lactob_Lj771: hypothetical protein LJ771_005; HMPREF9209_0564; phage(gi163932157) 8e-12 Click
15719950..720156 hypothetical protein; HMPREF9209_0565 0.0 Click
16720169..720504 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0566; phage(gi90592581) 6e-60 Click
17720509..720787 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0567; phage(gi90592582) 5e-40 Click
18720901..721053 PHAGE_Lactob_KC5a: putative recombination protein; HMPREF9209_0568; phage(gi90592583) 9e-21 Click
19721100..721426 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0569; phage(gi90592584) 5e-59 Click
20721426..721704 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0570; phage(gi90592585) 7e-48 Click
21721710..722510 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0571; phage(gi90592586) 7e-117 Click
22722525..722980 PHAGE_Staphy_85: ORF017; HMPREF9209_0572; phage(gi66394887) 6e-28 Click
23723079..723429 PHAGE_Lactob_KC5a: putative phage replication protein; HMPREF9209_0573; phage(gi90592587) 1e-15 Click
24723435..723740 PHAGE_Lactob_KC5a: putative transcriptional regulator; HMPREF9209_0574; phage(gi90592588) 3e-18 Click
25723733..724518 PHAGE_Lactob_KC5a: putative anti-repressor; HMPREF9209_0575; phage(gi90592591) 4e-117 Click
26724533..724718 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0576; phage(gi90592592) 2e-27 Click
27724728..724937 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0577; phage(gi90592593) 5e-33 Click
28724942..725241 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0578; phage(gi90592594) 2e-48 Click
29725443..725604 hypothetical protein; HMPREF9209_0579 0.0 Click
30725601..726062 PHAGE_Lactob_KC5a: putative holiday junction resolvase; HMPREF9209_0580; phage(gi90592597) 8e-82 Click
31726063..726323 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0581; phage(gi90592598) 6e-22 Click
32726448..726579 conserved hypothetical protein; HMPREF9209_0582 0.0 Click
33726569..726847 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0583; phage(gi90592599) 1e-16 Click
34726952..727092 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0584; phage(gi90592600) 3e-18 Click
35727130..727246 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0585; phage(gi90592601) 2e-17 Click
36727276..727785 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0586; phage(gi90592602) 2e-89 Click
37728438..728511 tRNA 0.0 Click
38728817..728969 conserved hypothetical protein; HMPREF9209_0588 0.0 Click
39729116..729322 conserved hypothetical protein; HMPREF9209_0589 0.0 Click
40729381..730358 PHAGE_Lister_B054: gp77; HMPREF9209_0590; phage(gi157325361) 2e-76 Click
41730530..730685 PHAGE_Entero_phiFL3A: DNA adenine methyltransferase; HMPREF9209_0591; phage(gi281416249) 6e-07 Click
42730729..730980 PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF9209_0592; phage(gi281416250) 6e-10 Click
43731007..731516 PHAGE_Lactob_Lj771: small terminase subunit; HMPREF9209_0593; phage(gi163932180) 2e-84 Click
44731479..732708 PHAGE_Lactob_KC5a: putative phage terminase large subunit B; HMPREF9209_0594; phage(gi90592610) 0.0 Click
45732699..734111 PHAGE_Lactob_KC5a: putative phage portal protein; HMPREF9209_0595; phage(gi90592611) 0.0 Click
46734101..735255 PHAGE_Lactob_KC5a: putative phage head protein; HMPREF9209_0596; phage(gi90592612) 0.0 Click
47735375..735929 PHAGE_Lactob_KC5a: putative phage minor capsid protein; HMPREF9209_0597; phage(gi90592613) 5e-99 Click
48735934..736974 PHAGE_Lactob_KC5a: putative phage major capsid protein; HMPREF9209_0598; phage(gi90592614) 0.0 Click
49736983..737375 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0599; phage(gi90592615) 3e-31 Click
50737372..737734 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0600; phage(gi90592616) 2e-60 Click
51737731..738165 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0601; phage(gi90592617) 3e-77 Click
52738279..738569 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0602; phage(gi90592618) 5e-49 Click
53738589..738771 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0603; phage(gi90592619) 9e-27 Click
54738771..740126 PHAGE_Lactob_KC5a: putative phage sheath tail protein; HMPREF9209_0604; phage(gi90592620) 0.0 Click
55740138..740608 PHAGE_Lactob_KC5a: putative phage core tail protein; HMPREF9209_0605; phage(gi90592621) 9e-84 Click
56740620..741039 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0606; phage(gi90592622) 3e-72 Click
57741114..741230 conserved hypothetical protein; HMPREF9209_0607 0.0 Click
58741276..744686 PHAGE_Lactob_KC5a: putative minor tail protein; HMPREF9209_0608; phage(gi90592623) 0.0 Click
59744688..745368 PHAGE_Lactob_KC5a: putative LysM-like protein; HMPREF9209_0609; phage(gi90592624) 3e-130 Click
60745365..746411 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0610; phage(gi90592625) 0.0 Click
61746567..746752 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0611; phage(gi90592626) 3e-29 Click
62746703..747125 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0612; phage(gi90592627) 6e-73 Click
63747122..748273 PHAGE_Lactob_KC5a: putative tail protein; HMPREF9209_0613; phage(gi90592628) 0.0 Click
64748263..748823 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0614; phage(gi90592629) 2e-95 Click
65748836..749390 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0615; phage(gi90592630) 8e-86 Click
66749402..751006 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0616; phage(gi90592630) 7e-150 Click
67751045..751563 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0617; phage(gi90592631) 5e-73 Click
68751563..751757 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0618; phage(gi90592632) 9e-29 Click
69751720..751878 PHAGE_Lactob_Lj771: hypothetical protein LJ771_051; HMPREF9209_0619; phage(gi163932150) 1e-14 Click
70752142..752420 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF9209_0620; phage(gi90592633) 5e-45 Click
71752417..752542 hypothetical protein; HMPREF9209_0621 0.0 Click
72752524..752847 PHAGE_Lactob_KC5a: holin; HMPREF9209_0622; phage(gi90592634) 1e-34 Click
73752857..753789 PHAGE_Lactob_phiadh: lysin; HMPREF9209_0623; phage(gi9633062) 1e-126 Click
74754585..755178 PHAGE_Equid__4: envelope glycoprotein J; HMPREF9209_0624; phage(gi9629801) 1e-09 Click
75755162..756952 PHAGE_Parame_AR158: hypothetical protein AR158_C024L; HMPREF9209_0625; phage(gi157953215) 2e-07 Click
76757196..757675 conserved domain protein; HMPREF9209_0626 0.0 Click
77757689..758258 conserved domain protein; HMPREF9209_0627 0.0 Click
78758315..759280 mannose-6-phosphate isomerase, class I; HMPREF9209_0628 0.0 Click
79759305..759697 conserved hypothetical protein; HMPREF9209_0629 0.0 Click
80759697..760407 PHAGE_Feldma_virus: putative sensor histidine kinase; HMPREF9209_0630; phage(gi197322366) 5e-07 Click
81766472..766486 attR    GGAGAAAAAATGAAA 0.0 Click

Region 4, total : 8 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11121870..1121881 attL    TTTTGCTAGTAA 0.0 Click
2complement(1134786..1136180) PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; HMPREF9209_1048; phage(gi15834112) 7e-117 Click
3complement(1136191..1136715) PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; HMPREF9209_1049; phage(gi15834113) 1e-40 Click
4complement(1136720..1137643) PHAGE_Staphy_PT1028: ORF002; HMPREF9209_1050; phage(gi66395166) 2e-12 Click
5complement(1137646..1138962) tRNA:M(5)U-54 methyltransferase; HMPREF9209_1051 0.0 Click
6complement(1139060..1141000) PHAGE_Acanth_mimivirus: DNA topoisomerase 1; HMPREF9209_1052; phage(gi311977597) 9e-94 Click
7complement(1141206..1142051) DNA protecting protein DprA; HMPREF9209_1053 0.0 Click
8complement(1142102..1142854) PHAGE_Cafete_BV_PW1: putative ribonuclease HII; HMPREF9209_1054; phage(gi310831397) 3e-28 Click
9complement(1142851..1143690) ribosome biogenesis GTP-binding protein YlqF; HMPREF9209_1055 0.0 Click
10complement(1143693..1145057) PHAGE_Vibrio_ICP1: putative Gp5 baseplate hub subunit and tail lysozyme; HMPREF9209_1056; phage(gi325171175) 4e-08 Click
111159505..1159516 attR    TTTTGCTAGTAA 0.0 Click