Clostridium difficile 6466 , whole genome shotgun sequence. [asmbl_id: NC_000000].3894519, GC%: 28.29%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 18 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11356820..1357614 PHAGE_Amsact_: putative ATP-binding cassette transporter; PP_01512; phage(gi9964444) 6e-20 Click
21357615..1359237 sodium extrusion ABC transporter permease [Clostridium difficile R20291] gi|260686876|ref|YP_003218009.1|; PP_01513 0.0 Click
31359234..1359674 sodium extrusion ABC transporter permease [Clostridium difficile R20291] gi|260686876|ref|YP_003218009.1|; PP_01514 1e-68 Click
41359899..1360021 PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01515; phage(gi414090456) 1e-08 Click
51360303..1361196 PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01516; phage(gi414090458) 3e-81 Click
61361216..1361416 PHAGE_Clostr_phiC2: putative hydrolase; PP_01517; phage(gi134287357) 1e-10 Click
71361998..1362174 PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01518; phage(gi414090459) 6e-26 Click
81362174..1362332 PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01519; phage(gi414090460) 4e-20 Click
91362594..1363646 PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01520; phage(gi414090461) 3e-140 Click
101363643..1363834 PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01521; phage(gi414090462) 1e-17 Click
111363818..1364339 PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01522; phage(gi414090462) 5e-29 Click
121364340..1365326 PHAGE_Clostr_phiMMP04: tail fiber; PP_01523; phage(gi414090463) 1e-48 Click
131365348..1367663 PHAGE_Bathyc_BpV1: hypothetical protein; PP_01524; phage(gi313768166) 6e-17 Click
141367632..1367763 virulence factor MviN [Clostridium difficile R20291] gi|260686713|ref|YP_003217846.1|; PP_01525 3e-14 Click
151367742..1368041 virulence factor MviN [Clostridium difficile R20291] gi|260686713|ref|YP_003217846.1|; PP_01526 2e-34 Click
161368068..1368727 deoxyribose-phosphate aldolase [Clostridium difficile R20291] gi|260686714|ref|YP_003217847.1|; PP_01527 1e-96 Click
171369192..1369560 transcriptional regulator [Clostridium difficile R20291] gi|260686715|ref|YP_003217848.1|; PP_01528 4e-60 Click
181369564..1370439 PHAGE_Amsact_: putative ATP-binding cassette transporter; PP_01529; phage(gi9964444) 7e-18 Click

Region 2, total : 16 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11664174..1665112 PHAGE_Parame_1: hypothetical protein; PP_01913; phage(gi9631622) 7e-11 Click
21665300..1667075 PHAGE_Clostr_st: putative NAD-dependent DNA ligase; PP_01914; phage(gi80159718) 3e-91 Click
31667084..1667323 PHAGE_Vibrio_vB_VpaS_MAR10: DNA ligase; PP_01915; phage(gi428782097) 4e-08 Click
41667482..1668543 PHAGE_Yersin_phiR1_37: non-canonical purine NTP pyrophosphatase; PP_01916; phage(gi358356583) 8e-06 Click
51668549..1668830 PHAGE_Uganda_virus: polyprotein; PP_01917; phage(gi314998982) 3e-06 Click
61668830..1669300 phosphoesterase [Clostridium difficile R20291] gi|260688509|ref|YP_003219643.1|; PP_01918 3e-84 Click
71669494..1670780 trigger factor [Clostridium difficile R20291] gi|260688508|ref|YP_003219642.1|; PP_01919 0.0 Click
81670930..1671514 PHAGE_Entero_mEp213: head maturation protease; PP_01920; phage(gi428782594) 1e-14 Click
91671533..1672783 PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; PP_01921; phage(gi15834112) 4e-17 Click
10complement(1672852..1673379) chromate transport protein [Clostridium difficile R20291] gi|260688505|ref|YP_003219639.1|; PP_01922 1e-90 Click
11complement(1673367..1673501) chromate transport protein [Clostridium difficile R20291] gi|260688504|ref|YP_003219638.1|; PP_01924 1e-16 Click
121673500..1673676 hypothetical; PP_01923 0.0 Click
13complement(1673687..1673971) PHAGE_Bacill_phBC6A52: Collagen triple helix repeat protein; PP_01925; phage(gi31415834) 2e-25 Click
14complement(1674010..1674738) PHAGE_Prochl_P_SSM2: phage tail fiber-like protein; PP_01926; phage(gi61805900) 1e-44 Click
15complement(1674817..1675893) PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p022; PP_01927; phage(gi9630147) 4e-15 Click
16complement(1676196..1676780) PHAGE_Entero_mEp213: head maturation protease; PP_01928; phage(gi428782594) 2e-13 Click

Region 3, total : 17 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12007623..2007823 PHAGE_Lactoc_bIL312: Csp; PP_02323; phage(gi13095918) 6e-17 Click
22008243..2008671 regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_02324 4e-77 Click
3complement(2008814..2009356) peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_02325 4e-96 Click
4complement(2009688..2010104) hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_02326 3e-71 Click
5complement(2010174..2010773) PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_02327; phage(gi209901280) 5e-10 Click
6complement(2010784..2011176) PHAGE_Geobac_GBSV1: immunity repressor protein; PP_02328; phage(gi115334658) 2e-13 Click
72011345..2011542 PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_02329; phage(gi17426238) 6e-06 Click
82011646..2012086 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_02330; phage(gi90592709) 3e-37 Click
92012421..2012777 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_02331; phage(gi90592649) 9e-18 Click
102012782..2013846 PHAGE_Clostr_phiMMP04: tail sheath; PP_02332; phage(gi414090451) 5e-69 Click
112013860..2014288 PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_02333; phage(gi414090452) 8e-08 Click
122014402..2014848 PHAGE_Clostr_CD119: XkdN protein; PP_02334; phage(gi90592652) 2e-15 Click
132014926..2015042 hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_02335 1e-14 Click
142015042..2015560 hypothetical protein CDR20291_1210 [Clostridium difficile R20291] gi|260686575|ref|YP_003217708.1|; PP_02336 2e-75 Click
152015655..2017274 PHAGE_Clostr_phiMMP04: tail tape measure; PP_02337; phage(gi414090455) 1e-15 Click
162017322..2017495 PHAGE_Clostr_phiMMP04: tail tape measure; PP_02338; phage(gi414090455) 7e-05 Click
172017495..2018925 PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_02339; phage(gi414090456) 9e-32 Click

Region 4, total : 26 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12771651..2771662 attL    TATTTTAATATA 0.0 Click
2complement(2771875..2772030) PHAGE_Clostr_CD119: putative integrase; PP_03216; phage(gi90592679) 6e-09 Click
3complement(2772399..2772617) PHAGE_Clostr_phiMMP02: lambda repressor-like DNA-binding protein; PP_03217; phage(gi414090407) 8e-20 Click
42773419..2773595 hypothetical; PP_03218 0.0 Click
5complement(2773600..2773920) PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; PP_03219; phage(gi397912660) 5e-06 Click
62774087..2774302 hypothetical; PP_03220 0.0 Click
72774462..2774590 hypothetical; PP_03221 0.0 Click
82774604..2775353 PHAGE_Lactob_c5: putative antirepressor; PP_03222; phage(gi418488189) 9e-29 Click
92775446..2776081 hypothetical protein CD196_1444 [Clostridium difficile CD196] gi|260683187|ref|YP_003214472.1|; PP_03223 1e-105 Click
102776150..2776368 hypothetical protein CDR20291_1073 [Clostridium difficile R20291] gi|260686439|ref|YP_003217572.1|; PP_03224 8e-32 Click
112776483..2776656 hypothetical; PP_03225 0.0 Click
122776689..2777126 PHAGE_Entero_phiFL4A: hypothetical protein; PP_03226; phage(gi281416448) 1e-08 Click
132777138..2778304 PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; PP_03227; phage(gi209363569) 4e-100 Click
142778319..2778654 hypothetical protein H04402_02629 [Clostridium botulinum H04402 065] gi|387818822|ref|YP_005679169.1|; PP_03228 1e-08 Click
152778707..2779279 hypothetical protein CDR20291_1422 [Clostridium difficile R20291] gi|260686786|ref|YP_003217919.1|; PP_03229 2e-103 Click
162779302..2779874 PHAGE_Bacill_PBC1: hypothetical protein; PP_03230; phage(gi389060352) 2e-52 Click
172779874..2780365 PHAGE_Entero_phiFL4A: DNA polymerase; PP_03231; phage(gi281416455) 4e-41 Click
182780343..2781833 PHAGE_Staphy_2638A: ORF004; PP_03232; phage(gi66395454) 1e-140 Click
192781845..2784262 PHAGE_Entero_phiFL4A: VirE domain protein; PP_03233; phage(gi281416460) 0.0 Click
202784586..2784867 PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp30; PP_03234; phage(gi48697220) 1e-11 Click
212784897..2786186 PHAGE_Entero_phiFL4A: DNA helicase; PP_03235; phage(gi281416462) 7e-147 Click
222786210..2786347 PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp67; PP_03236; phage(gi209901304) 9e-05 Click
232786340..2786819 PHAGE_Clostr_PhiS63: gp40; PP_03237; phage(gi388570666) 1e-40 Click
242787261..2787434 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp74; PP_03238; phage(gi90592710) 6e-25 Click
252787434..2788045 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp75; PP_03239; phage(gi90592711) 2e-111 Click
26complement(2788556..2788632) tRNA 0.0 Click
27complement(2788644..2788720) tRNA 0.0 Click
28complement(2788727..2788802) tRNA 0.0 Click
29complement(2788913..2789089) hypothetical protein CDR20291_1495 [Clostridium difficile R20291] gi|260686858|ref|YP_003217991.1|; PP_03240 2e-16 Click
30complement(2789472..2789621) PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03241; phage(gi414090402) 8e-14 Click
312804156..2804167 attR    TATTTTAATATA 0.0 Click

Region 5, total : 73 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
13233936..3234910 PHAGE_Fujina_virus: p140 polyprotein; PP_03763; phage(gi9626155) 6e-08 Click
23235156..3235674 PHAGE_Lister_A511: gp52; PP_03764; phage(gi157325197) 2e-06 Click
33235713..3236606 hypothetical protein CDR20291_3322 [Clostridium difficile R20291] gi|260688663|ref|YP_003219797.1|; PP_03765 1e-164 Click
43236624..3236881 protein methyltransferase [Clostridium difficile R20291] gi|260688662|ref|YP_003219796.1|; PP_03766 1e-39 Click
53236892..3237473 PHAGE_Amsact_: putative SAM-dependent methyltransferase; PP_03767; phage(gi9964318) 6e-05 Click
6complement(3237721..3237972) PHAGE_Caulob_CcrColossus: putative TerD-like bacterial stress protein; PP_03768; phage(gi414088275) 7e-08 Click
7complement(3238050..3238250) tellurium resistance protein [Clostridium difficile R20291] gi|260686896|ref|YP_003218029.1|; PP_03769 9e-26 Click
8complement(3238289..3238867) PHAGE_Caulob_CcrColossus: putative TerD-like bacterial stress protein; PP_03770; phage(gi414088275) 1e-28 Click
93239197..3239400 serine protease [Clostridium difficile R20291] gi|260686894|ref|YP_003218027.1|; PP_03771 8e-29 Click
103239468..3240007 serine protease [Clostridium difficile R20291] gi|260686894|ref|YP_003218027.1|; PP_03772 3e-93 Click
11complement(3239988..3240107) hypothetical; PP_03773 0.0 Click
123240145..3240759 PHAGE_Cafete_BV_PW1: putative ELP3 family histone acetyltransferase; PP_03774; phage(gi310831381) 4e-08 Click
133240858..3241127 radical SAM protein [Clostridium difficile R20291] gi|260686453|ref|YP_003217586.1|; PP_03775 7e-42 Click
14complement(3241130..3241297) tellurium resistance protein [Clostridium difficile R20291] gi|260686913|ref|YP_003218046.1|; PP_03776 5e-11 Click
15complement(3241400..3242197) lipoprotein [Clostridium difficile R20291] gi|260686914|ref|YP_003218047.1|; PP_03777 3e-147 Click
16complement(3242507..3243493) lipoate-protein ligase [Clostridium difficile R20291] gi|260686915|ref|YP_003218048.1|; PP_03778 0.0 Click
173244028..3245707 Na+/H+ antiporter [Clostridium difficile R20291] gi|260686916|ref|YP_003218049.1|; PP_03779 0.0 Click
183245817..3245897 tRNA 0.0 Click
19complement(3246914..3247819) hypothetical protein CDR20291_1538 [Clostridium difficile R20291] gi|260686901|ref|YP_003218034.1|; PP_03780 3e-154 Click
203248435..3249496 Sodium:dicarboxylate symporter [Clostridium difficile R20291] gi|260687430|ref|YP_003218564.1|; PP_03781 0.0 Click
213249554..3249706 sodium:dicarboxylate symporter [Bacillus coagulans 36D1] gi|347752015|ref|YP_004859580.1|; PP_03782 4e-08 Click
22complement(3249856..3250455) cNMP-binding regulatory protein [Clostridium difficile R20291] gi|260687429|ref|YP_003218563.1|; PP_03783 4e-104 Click
233250720..3251421 iron-sulfur binding protein [Clostridium difficile R20291] gi|260687428|ref|YP_003218562.1|; PP_03784 2e-120 Click
243251484..3251801 hypothetical protein CDR20291_1472 [Clostridium difficile R20291] gi|260686835|ref|YP_003217968.1|; PP_03785 2e-44 Click
253251813..3252280 PHAGE_Bacill_SPO1: gp2.8; PP_03786; phage(gi209972893) 4e-15 Click
263252390..3252950 PHAGE_Staphy_GH15: putative lipase/acylhydrolase domain-containing protein; PP_03787; phage(gi418487944) 5e-06 Click
273253251..3253541 hypothetical; PP_03788 0.0 Click
28complement(3253521..3254138) PHAGE_Clostr_st: putative IS transposase (OrfB); PP_03789; phage(gi80159731) 2e-50 Click
293254440..3255123 PHAGE_Clostr_phiMMP02: terminase small subunit; PP_03790; phage(gi414090366) 2e-115 Click
303255113..3255721 PHAGE_Strept_6: putative terminase large subunit; PP_03791; phage(gi28876465) 3e-26 Click
313255714..3256235 PHAGE_Clostr_phi8074_B1: putative terminase large subunit; PP_03792; phage(gi431810360) 6e-13 Click
323256465..3257154 PHAGE_Strept_Dp_1: portal protein; PP_03793; phage(gi327198352) 2e-22 Click
333257108..3257440 PHAGE_Strept_Dp_1: portal protein; PP_03794; phage(gi327198352) 2e-12 Click
343257431..3257970 PHAGE_Strept_Dp_1: portal protein; PP_03795; phage(gi327198352) 3e-19 Click
353257979..3259598 PHAGE_Clostr_phiCTP1: putative head morphogenesis protein; PP_03796; phage(gi304360668) 2e-38 Click
363259600..3259752 hypothetical; PP_03797 0.0 Click
373259821..3260240 PHAGE_Clostr_phi8074_B1: hypothetical protein; PP_03798; phage(gi431810434) 5e-07 Click
383260234..3260554 PHAGE_Staphy_phiETA: similar to phage phig1e RORF204 (minor capsid protein); PP_03799; phage(gi17426271) 2e-08 Click
393260607..3260882 PHAGE_Bacill_PBC1: putative minor structural protein; PP_03800; phage(gi389060329) 8e-06 Click
403260903..3261256 PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp11; PP_03801; phage(gi304360673) 1e-14 Click
413261277..3262317 PHAGE_Clostr_phiCTP1: hypothetical phage capsid protein; PP_03802; phage(gi304360674) 5e-111 Click
423262332..3262532 hypothetical; PP_03803 0.0 Click
433262535..3262852 PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp14; PP_03804; phage(gi304360676) 3e-12 Click
443262849..3263022 hypothetical protein H04402_02320 [Clostridium botulinum H04402 065] gi|387818515|ref|YP_005678862.1|; PP_03805 1e-06 Click
453263078..3263233 PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03806; phage(gi414090374) 1e-06 Click
463263244..3263654 PHAGE_Clostr_phiMMP02: putative tail component; PP_03807; phage(gi414090375) 2e-43 Click
473263656..3264480 PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp11; PP_03808; phage(gi209901248) 4e-126 Click
483264493..3264696 PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp12; PP_03809; phage(gi209901249) 8e-30 Click
493264698..3266119 PHAGE_Clostr_phiMMP02: tail sheath; PP_03810; phage(gi414090378) 0.0 Click
503266135..3266548 PHAGE_Clostr_phiMMP02: XkdM-related protein; PP_03811; phage(gi414090379) 4e-73 Click
513266632..3267126 PHAGE_Clostr_phiMMP02: XkdN-related protein; PP_03812; phage(gi414090380) 4e-83 Click
523267303..3268748 PHAGE_Clostr_phiMMP02: tail tape measure; PP_03813; phage(gi414090382) 0.0 Click
533268727..3269593 PHAGE_Clostr_phiMMP02: tail tape measure; PP_03814; phage(gi414090382) 5e-117 Click
543269580..3270044 PHAGE_Clostr_phiMMP02: tail tape measure; PP_03815; phage(gi414090382) 4e-65 Click
553270092..3271585 PHAGE_Clostr_phiMMP02: tail tape measure; PP_03816; phage(gi414090382) 0.0 Click
563271842..3272006 PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03817; phage(gi414090383) 9e-05 Click
573272323..3272439 hypothetical; PP_03818 0.0 Click
583272469..3272585 hypothetical; PP_03819 0.0 Click
593272634..3272864 hypothetical; PP_03820 0.0 Click
603272925..3273596 PHAGE_Clostr_phiCD27: putative peptidoglycan-binding LysM; PP_03821; phage(gi209901255) 8e-118 Click
613273593..3274555 PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp19; PP_03822; phage(gi209901256) 3e-178 Click
623274548..3274913 PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp20; PP_03823; phage(gi209901257) 3e-59 Click
633274888..3275346 PHAGE_Clostr_phiMMP02: XkdS-related protein; PP_03824; phage(gi414090387) 2e-77 Click
643275355..3276080 PHAGE_Clostr_phiMMP02: baseplate J family protein; PP_03825; phage(gi414090388) 8e-125 Click
653276133..3276492 PHAGE_Clostr_phiMMP02: baseplate J family protein; PP_03826; phage(gi414090388) 6e-49 Click
663276489..3277118 PHAGE_Clostr_phiMMP02: XkdT-related protein; PP_03827; phage(gi414090389) 3e-107 Click
673277131..3277865 PHAGE_Clostr_phiMMP02: tail fiber; PP_03828; phage(gi414090390) 3e-102 Click
683277880..3279154 PHAGE_Clostr_phiCD6356: hypothetical protein; PP_03829; phage(gi326536869) 8e-05 Click
693279183..3279299 PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03830; phage(gi414090395) 1e-11 Click
703279304..3279480 PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03831; phage(gi414090395) 2e-23 Click
713279481..3279618 PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp31; PP_03832; phage(gi209901268) 3e-19 Click
723279650..3279880 PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03833; phage(gi414090397) 1e-37 Click
733280093..3280224 PHAGE_Clostr_CD119: putative lysin; PP_03834; phage(gi90592671) 4e-06 Click
743280607..3280786 PHAGE_Clostr_CD119: putative lysin; PP_03835; phage(gi90592671) 2e-25 Click