Escherichia coli H736 .1, whole genome shotgun sequence. [asmbl_id: NC_000000].4652606, GC%: 50.82%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 14 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1922758..922772 attL    GCTTTTTTATACTAA 0.0 Click
2complement(922846..923916) PHAGE_Entero_lambda: integration protein; PP_00886; phage(gi9626273) 0.0 Click
3complement(924881..925261) PHAGE_Entero_lambda: ea22; PP_00887; phage(gi9626276) 3e-47 Click
4925260..925448 PHAGE_Entero_lambda: DNA replication protein; PP_00888; phage(gi9626295) 7e-32 Click
5925445..926146 PHAGE_Entero_lambda: DNA replication protein; PP_00889; phage(gi9626296) 2e-131 Click
6926143..926433 PHAGE_Entero_lambda: ren exclusion protein; PP_00890; phage(gi9626297) 8e-47 Click
7926507..926947 PHAGE_Entero_lambda: NinB; PP_00891; phage(gi9626298) 2e-82 Click
8926944..927471 PHAGE_Entero_HK544: putative N-6-adenine-methyltransferase; PP_00892; phage(gi428783266) 9e-102 Click
9928195..928557 PHAGE_Entero_mEp237: Holliday junction resolvase RusA; PP_00893; phage(gi435439318) 1e-61 Click
10928554..928694 PHAGE_Entero_mEp237: hypothetical protein; PP_00894; phage(gi435439319) 1e-10 Click
11928780..929163 PHAGE_Entero_2008: antitermination protein Q; PP_00895; phage(gi209427762) 8e-57 Click
12complement(929352..930434) outer membrane porin, DLP12 prophage [Escherichia coli O104:H4 str. 2011C-3493] gi|407483057|ref|YP_006780206.1|; PP_00896 0.0 Click
13931008..931145 PHAGE_Escher_P13374: lysis protein, holin; PP_00897; phage(gi410491645) 2e-13 Click
14931358..931372 attR    GCTTTTTTATACTAA 0.0 Click
15complement(931463..931939) kinase inhibitor protein [Shigella sonnei Ss046] gi|74311317|ref|YP_309736.1|; PP_00898 1e-91 Click
16complement(931998..933230) PHAGE_Mycoba_Myrna: gp183; PP_00899; phage(gi203454746) 8e-07 Click

Region 2, total : 26 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11415287..1415303 attL    AGAACACTTTCTTAAAT 0.0 Click
21415490..1416683 PHAGE_Entero_mEp237: integrase; PP_01387; phage(gi435439292) 0.0 Click
3complement(1416919..1417053) PHAGE_Entero_mEp237: hypothetical protein; PP_01388; phage(gi435439294) 9e-19 Click
4complement(1417200..1418315) PHAGE_Entero_HK225: DNA single-strand annealing protein; PP_01389; phage(gi428782409) 0.0 Click
5complement(1418324..1419433) PHAGE_Entero_mEp237: exonuclease; PP_01390; phage(gi435439296) 0.0 Click
61419493..1420503 PHAGE_Entero_SfV: tail sheath protein; PP_01391; phage(gi19549001) 9e-76 Click
71420507..1420878 PHAGE_Entero_SfV: hypothetical protein SfVp12; PP_01392; phage(gi19549002) 5e-06 Click
81420880..1421158 hypothetical protein ROD_25881 [Citrobacter rodentium ICC168] gi|283786258|ref|YP_003366123.1|; PP_01393 6e-35 Click
91421116..1421307 hypothetical protein ROD_25871 [Citrobacter rodentium ICC168] gi|283786257|ref|YP_003366122.1|; PP_01394 8e-11 Click
101421300..1423153 PHAGE_Entero_K1F: internal virion protein; PP_01395; phage(gi77118204) 2e-21 Click
111423200..1424600 PHAGE_Entero_SfV: tail/DNA circulation protein; PP_01396; phage(gi19549005) 2e-26 Click
121424597..1425682 PHAGE_Entero_SfV: tail protein; PP_01397; phage(gi19549006) 4e-40 Click
131425679..1426260 PHAGE_Entero_SfV: tail protein; PP_01398; phage(gi19549007) 4e-17 Click
141426257..1426706 PHAGE_Entero_SfV: tail protein; PP_01399; phage(gi19549008) 4e-12 Click
151426750..1427844 PHAGE_Entero_SfV: tail protein; PP_01400; phage(gi19549009) 8e-35 Click
161427841..1428515 PHAGE_Entero_SfV: tail protein; PP_01401; phage(gi19548988) 4e-24 Click
171428542..1429327 PHAGE_Klebsi_JD001: putative tail-fiber protein; PP_01402; phage(gi448245166) 6e-28 Click
18complement(1429306..1430397) PHAGE_Salmon_c341: O-polysaccharide acetyltransferase protein; PP_01403; phage(gi255252697) 3e-07 Click
191430762..1432537 PHAGE_Staphy_EW: ORF002; PP_01404; phage(gi66395809) 3e-09 Click
201432540..1433289 hypothetical; PP_01405 0.0 Click
211433669..1433908 PHAGE_Entero_HK225: hypothetical protein; PP_01406; phage(gi428782404) 2e-18 Click
221434019..1434225 PHAGE_Entero_mEp390: hypothetical protein; PP_01407; phage(gi428782690) 1e-11 Click
23complement(1434489..1434683) hypothetical protein SSON_1274 [Shigella sonnei Ss046] gi|161986539|ref|YP_310222.2|; PP_01408 3e-29 Click
24complement(1434649..1434840) PHAGE_Entero_SfV: hypothetical protein SfVp21; PP_01409; phage(gi19548989) 6e-07 Click
251434917..1435465 PHAGE_Entero_mEp237: DNA invertase; PP_01410; phage(gi435439291) 2e-99 Click
26complement(1435584..1435880) hypothetical protein SF1254 [Shigella flexneri 2a str. 301] gi|344915256|ref|NP_707160.3|; PP_01411 3e-49 Click
271435586..1435602 attR    AGAACACTTTCTTAAAT 0.0 Click
281436104..1436481 PHAGE_Parame_NY2A: hypothetical protein NY2A_B322R; PP_01412; phage(gi157952626) 2e-09 Click

Region 3, total : 9 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(1452783..1453373) PHAGE_Cyanop_PSS2: BtuR/CobO ATP:corrinoid adenosyltransferase; PP_01430; phage(gi254729498) 1e-15 Click
2complement(1453370..1454128) PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; PP_01431; phage(gi116326757) 5e-10 Click
31454113..1454232 hypothetical; PP_01432 0.0 Click
41454348..1455397 PHAGE_Entero_WV8: putative head maturation protease; PP_01433; phage(gi238801794) 2e-13 Click
5complement(1455433..1455684) hypothetical protein SF1275 [Shigella flexneri 2a str. 301] gi|24112670|ref|NP_707180.1|; PP_01434 8e-41 Click
61456064..1458661 PHAGE_Cafete_BV_PW1: putative DNA topoisomerase IA; PP_01435; phage(gi310831073) 1e-89 Click
71458871..1459845 transcriptional regulator CysB [Shigella sonnei 53G] gi|383178740|ref|YP_005456745.1|; PP_01436 0.0 Click
8complement(1460152..1460307) PHAGE_Entero_P1: InsB; PP_01437; phage(gi46401642) 4e-23 Click
9complement(1460279..1460440) PHAGE_Entero_P1: InsA; PP_01438; phage(gi46401643) 3e-22 Click

Region 4, total : 36 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(1535265..1536200) PHAGE_Parame_FR483: hypothetical protein FR483_N404R; PP_01511; phage(gi155370502) 3e-08 Click
21536221..1536232 attL    AAATGGGGCAAA 0.0 Click
3complement(1536252..1537430) PHAGE_Salmon_1: putative bacteriophage integrase; PP_01512; phage(gi169257156) 1e-85 Click
4complement(1537489..1537704) hypothetical protein SSON53_10525 [Shigella sonnei 53G] gi|383178640|ref|YP_005456645.1|; PP_01513 3e-36 Click
5complement(1537804..1537992) hypothetical protein ECBD_2269 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253773651|ref|YP_003036482.1|; PP_01514 1e-28 Click
61538041..1538163 hypothetical; PP_01515 0.0 Click
7complement(1538236..1539045) PHAGE_Entero_epsilon15: RecT; PP_01516; phage(gi30387413) 9e-80 Click
8complement(1539038..1541698) PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; PP_01517; phage(gi169257272) 2e-90 Click
9complement(1541800..1542075) hypothetical protein ECBD_2266 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253773649|ref|YP_003036480.1|; PP_01518 4e-43 Click
10complement(1542150..1542326) PHAGE_Gifsy_2: hypothetical protein STM1010.1n.Gifsy2; PP_01519; phage(gi169257274) 9e-05 Click
11complement(1542320..1542541) PHAGE_Escher_P13374: host killing protein; PP_01520; phage(gi410491620) 1e-05 Click
121543043..1543471 hypothetical protein ECBD_2263 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253773646|ref|YP_003036477.1|; PP_01521 2e-76 Click
13complement(1543468..1543623) PHAGE_Salico_CGphi29: hypothetical protein; PP_01522; phage(gi472340166) 7e-10 Click
14complement(1543634..1543768) hypothetical protein Z2402 [Escherichia coli O157:H7 str. EDL933] gi|15801810|ref|NP_287828.1|; PP_01523 2e-18 Click
15complement(1544068..1544490) PHAGE_Entero_mEp213: prophage repressor; PP_01524; phage(gi428782641) 2e-16 Click
161544826..1545248 PHAGE_Entero_mEp237: CII protein; PP_01525; phage(gi435439306) 1e-08 Click
171545312..1545680 PHAGE_Azospi_Cd: hypothetical protein APCd_gp15; PP_01526; phage(gi168495118) 2e-07 Click
18complement(1545688..1546341) hypothetical; PP_01528 0.0 Click
191546325..1546459 PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; PP_01527; phage(gi169257279) 1e-05 Click
201546466..1547200 PHAGE_Gifsy_2: bacteriophage DNA replication protein; PP_01529; phage(gi169257280) 3e-75 Click
211547339..1548442 PHAGE_Ostreo_OlV5: ATP-dependent metalloprotease; PP_01530; phage(gi472341366) 2e-17 Click
221548445..1550712 hypothetical protein mma_0811 [Janthinobacterium sp. Marseille] gi|152983150|ref|YP_001352501.1|; PP_01531 6e-147 Click
231551240..1551839 PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; PP_01532; phage(gi169257286) 6e-55 Click
241551839..1552129 PHAGE_Erwini_phiEt88: hypothetical protein; PP_01533; phage(gi327198620) 1e-32 Click
251552126..1552668 bacteriophage protein [Shigella flexneri 2a str. 301] gi|24112742|ref|NP_707252.1|; PP_01534 3e-89 Click
26complement(1552645..1552761) hypothetical; PP_01535 0.0 Click
271553002..1553077 tRNA 0.0 Click
281553081..1553155 tRNA 0.0 Click
291553126..1553251 hypothetical; PP_01536 0.0 Click
301553274..1553462 hypothetical; PP_01537 0.0 Click
31complement(1553683..1553808) hypothetical; PP_01538 0.0 Click
321553840..1554055 PHAGE_Stx2_c_II: holin; PP_01539; phage(gi302393164) 2e-28 Click
331554055..1554552 PHAGE_Entero_cdtI: lysin; PP_01540; phage(gi148609440) 2e-91 Click
341554549..1555013 PHAGE_Entero_HK630: cell lysis protein Rz; PP_01541; phage(gi428782852) 5e-77 Click
351555151..1556608 potassium uptake protein, TrkH family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253773638|ref|YP_003036469.1|; PP_01542 0.0 Click
361556746..1557234 PHAGE_Psychr_pOW20_A: DNA methylase; PP_01543; phage(gi472339820) 2e-35 Click
371557197..1558132 PHAGE_Entero_cdtI: putative tail tip assembly protein; PP_01544; phage(gi148609400) 2e-92 Click
38complement(1558190..1558678) PHAGE_Entero_lambda: hypothetical protein lambdap90; PP_01545; phage(gi9626267) 2e-47 Click
391558722..1561454 PHAGE_Entero_T5: L-shaped tail fiber protein; PP_01546; phage(gi46401894) 0.0 Click
401565512..1565523 attR    AAATGGGGCAAA 0.0 Click

Region 5, total : 30 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11742208..1742219 attL    AAAAAAGAGGTA 0.0 Click
21751867..1752070 PHAGE_Salmon_SSU5: putative selenium-binding protein YdfZ; PP_01726; phage(gi410491512) 1e-13 Click
3complement(1752105..1753565) PHAGE_Microm_MpV1: hypothetical protein; PP_01727; phage(gi313768442) 5e-41 Click
4complement(1753654..1754937) PHAGE_Burkho_phi1026b: gp59; PP_01728; phage(gi38707949) 1e-33 Click
51755723..1755956 hypothetical protein ECBD_2249 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253773632|ref|YP_003036463.1|; PP_01729 5e-37 Click
61756273..1756863 PHAGE_Escher_D108: G region invertase; PP_01730; phage(gi281199698) 8e-26 Click
7complement(1756961..1757536) PHAGE_Entero_HK630: tail fiber assembly protein; PP_01731; phage(gi428782810) 9e-107 Click
8complement(1757536..1757844) PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; PP_01732; phage(gi16129506) 4e-32 Click
9complement(1757811..1758344) PHAGE_Entero_mEp460: host specificity protein; PP_01733; phage(gi428782334) 6e-93 Click
10complement(1758443..1759279) PHAGE_Entero_mEp460: host specificity protein; PP_01734; phage(gi428782334) 1e-162 Click
11complement(1759272..1759529) PHAGE_Entero_HK630: terminase small subunit nu1; PP_01735; phage(gi428782788) 1e-39 Click
121759978..1760151 PHAGE_Entero_2008: hypothetical protein YYZ_gp48; PP_01736; phage(gi209427772) 6e-10 Click
13complement(1760771..1760944) Qin prophage hypothetical protein [Escherichia coli W] gi|386608932|ref|YP_006124418.1|; PP_01737 1e-23 Click
14complement(1761618..1761830) PHAGE_Lactoc_bIL312: Csp; PP_01738; phage(gi13095918) 1e-15 Click
15complement(1762193..1762675) PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; PP_01739; phage(gi16765210) 2e-53 Click
16complement(1762687..1763220) PHAGE_Entero_mEp460: endolysin; PP_01740; phage(gi428782372) 5e-97 Click
17complement(1763217..1763528) PHAGE_Entero_mEp460: hypothetical protein; PP_01741; phage(gi428782371) 1e-29 Click
18complement(1763533..1763739) PHAGE_Entero_mEp460: porin; PP_01742; phage(gi428782370) 1e-31 Click
19complement(1764502..1764717) PHAGE_Lactoc_bIL312: Csp; PP_01743; phage(gi13095918) 5e-16 Click
201765018..1765230 cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218551642|ref|YP_002385434.1|; PP_01744 5e-32 Click
21complement(1765652..1766404) PHAGE_Entero_mEp460: late gene regulator; PP_01745; phage(gi428782366) 4e-137 Click
22complement(1766418..1767467) PHAGE_Entero_mEp460: hypothetical protein; PP_01746; phage(gi428782365) 3e-113 Click
23complement(1767814..1768065) Qin prophage; hypothetical protein [Escherichia coli W] gi|386608944|ref|YP_006124430.1|; PP_01747 1e-40 Click
24complement(1768795..1769034) bifunctional antitoxin/transcriptional repressor RelB [Shigella flexneri 5 str. 8401] gi|110805508|ref|YP_689028.1|; PP_01748 2e-36 Click
251769567..1769899 Qin prophage hypothetical protein [Escherichia coli W] gi|386608948|ref|YP_006124434.1|; PP_01749 6e-54 Click
26complement(1770336..1771649) integrase catalytic subunit [Escherichia coli W] gi|386608949|ref|YP_006124435.1|; PP_01750 0.0 Click
27complement(1771984..1772163) hypothetical protein ECW_m1725 [Escherichia coli W] gi|386608951|ref|YP_006124437.1|; PP_01751 2e-27 Click
28complement(1772692..1772811) hypothetical; PP_01752 0.0 Click
29complement(1773316..1773672) PHAGE_Pectob_ZF40: putative methylase; PP_01753; phage(gi422936660) 7e-40 Click
301773994..1775892 PHAGE_Entero_mEp460: putative exonuclease; PP_01754; phage(gi428782342) 2e-58 Click
311776250..1777530 PHAGE_Entero_2008: putative integrase; PP_01755; phage(gi209427727) 1e-155 Click
321777674..1777685 attR    AAAAAAGAGGTA 0.0 Click