Pseudomonas syringae pv. syringae FF5 scf_7094_22_1, whole [asmbl_id: NC_000000].5656753, GC%: 59.01%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 8 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1559325..560272 PROPHAGE_Escher_CFT073: transposase; PP_00672; phage(gi26248352) 3e-08 Click
2complement(560405..561259) PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; PP_00673; phage(gi356870821) 4e-15 Click
3complement(561378..562370) hypothetical protein Psyr_4749 [Pseudomonas syringae pv. syringae B728a] gi|66047973|ref|YP_237814.1|; PP_00674 4e-180 Click
4complement(562367..563038) PHAGE_Plankt_PaV_LD: ABC transporter; PP_00675; phage(gi371496158) 7e-29 Click
5complement(563035..564309) PHAGE_Murid__4: envelope glycoprotein 350; PP_00676; phage(gi9629583) 6e-05 Click
6complement(564332..564469) cell division protein [Pseudomonas poae RE*1-1-14] gi|447918855|ref|YP_007399423.1|; PP_00677 1e-07 Click
7564726..566078 PHAGE_Megavi_chiliensis: putative zinc protease; PP_00678; phage(gi363539900) 2e-28 Click
8566075..567469 PHAGE_Megavi_lba: putative zinc protease; PP_00679; phage(gi448825281) 3e-07 Click

Region 2, total : 64 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12439692..2439703 attL    ATGATGACAAGG 0.0 Click
2complement(2442953..2443891) PHAGE_Pectob_ZF40: putative integrase; PP_02921; phage(gi422936642) 2e-22 Click
32444066..2445103 hypothetical protein Spea_3686 [Shewanella pealeana ATCC 700345] gi|157963498|ref|YP_001503532.1|; PP_02922 2e-58 Click
42445727..2446035 hypothetical; PP_02923 0.0 Click
52446593..2446805 hypothetical; PP_02924 0.0 Click
6complement(2446792..2447130) PHAGE_Yersin_PY54: hypothetical protein PY54p47; PP_02925; phage(gi33770556) 6e-07 Click
7complement(2447175..2447957) PHAGE_Pseudo_B3: hypothetical protein B3ORF5; PP_02926; phage(gi56692573) 2e-15 Click
8complement(2448012..2448221) PHAGE_Salico_CGphi29: DNA methylase; PP_02927; phage(gi472340158) 2e-09 Click
9complement(2448346..2448630) hypothetical; PP_02928 0.0 Click
10complement(2448627..2449163) PHAGE_Salico_CGphi29: DNA methylase; PP_02929; phage(gi472340158) 9e-57 Click
11complement(2449508..2449750) hypothetical protein PSEEN2234 [Pseudomonas entomophila L48] gi|104781358|ref|YP_607856.1|; PP_02930 4e-11 Click
12complement(2449747..2450334) hypothetical protein Psyr_2836 [Pseudomonas syringae pv. syringae B728a] gi|66046071|ref|YP_235912.1|; PP_02931 1e-96 Click
13complement(2450334..2450672) hypothetical protein PSPPH_2148 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71734645|ref|YP_274366.1|; PP_02932 2e-52 Click
142450729..2450740 attL    GGAATGTCGGGC 0.0 Click
15complement(2451945..2452175) hypothetical; PP_02933 0.0 Click
16complement(2452267..2452380) hypothetical; PP_02934 0.0 Click
17complement(2452661..2453284) PHAGE_Entero_mEp235: prophage repressor; PP_02935; phage(gi428781850) 2e-46 Click
182453404..2453613 hypothetical; PP_02936 0.0 Click
192453884..2454603 hypothetical protein PSPPH_2152 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71736076|ref|YP_274370.1|; PP_02937 1e-95 Click
202454600..2455271 PHAGE_Pseudo_PAJU2: putative replication protein P; PP_02938; phage(gi209552483) 2e-35 Click
212455268..2455471 hypothetical protein PP_3892 [Pseudomonas putida KT2440] gi|26990597|ref|NP_746022.1|; PP_02939 1e-05 Click
222455624..2455833 PHAGE_Sulfit_pCB2047_A: hypothetical protein; PP_02940; phage(gi472341907) 7e-10 Click
232455830..2456144 PHAGE_Pseudo_D3: Orf80; PP_02941; phage(gi9635668) 3e-10 Click
242456141..2457424 PHAGE_Gifsy_1: bacteriophage integrase protein; PP_02942; phage(gi169257266) 1e-15 Click
25complement(2457421..2457606) hypothetical; PP_02943 0.0 Click
262457705..2458007 hypothetical protein Pput_4124 [Pseudomonas putida F1] gi|148549330|ref|YP_001269432.1|; PP_02944 6e-20 Click
272458037..2458270 PHAGE_Pseudo_PAJU2: putative antitermination protein Q; PP_02945; phage(gi209552491) 4e-05 Click
282458365..2458376 attR    GGAATGTCGGGC 0.0 Click
29complement(2458386..2458637) hypothetical; PP_02946 0.0 Click
302458823..2459152 PHAGE_Erwini_PEp14: holin; PP_02947; phage(gi374531877) 2e-07 Click
312459152..2459574 PHAGE_Erwini_PEp14: hypothetical protein; PP_02948; phage(gi374531878) 4e-07 Click
322459528..2459866 PHAGE_Xantho_phiL7: P58; PP_02949; phage(gi238695645) 2e-25 Click
332460006..2460512 PHAGE_Burkho_Bcep176: gp80; PP_02950; phage(gi77864706) 1e-25 Click
342460509..2461633 PHAGE_Entero_2008: putative phage terminase-like protein large subunit; PP_02951; phage(gi209427775) 6e-116 Click
352461636..2462085 PHAGE_Entero_4795: putative large subunit terminase; PP_02952; phage(gi157166040) 3e-51 Click
362462088..2463104 PHAGE_Entero_mEp390: portal protein; PP_02953; phage(gi428782667) 6e-32 Click
372463082..2463273 PHAGE_Entero_mEp235: portal protein; PP_02954; phage(gi428781813) 2e-09 Click
382463257..2463901 PHAGE_Entero_phiP27: putative prohead protease; PP_02955; phage(gi18249903) 2e-23 Click
392463898..2465088 PHAGE_Cronob_ENT39118: major capsid protein; PP_02956; phage(gi431811052) 4e-52 Click
402465115..2465315 hypothetical protein NCGM2_1584 [Pseudomonas aeruginosa NCGM2.S1] gi|386064530|ref|YP_005979834.1|; PP_02957 6e-11 Click
412465316..2465567 PHAGE_Entero_mEp235: head-tail connector II; PP_02958; phage(gi428781817) 2e-06 Click
422465752..2465886 phage head-tail adaptor [Pseudomonas putida W619] gi|170723101|ref|YP_001750789.1|; PP_02959 3e-06 Click
432465896..2466060 hypothetical; PP_02960 0.0 Click
442466082..2466564 HK97 family phage protein [Pseudomonas putida W619] gi|170723099|ref|YP_001750787.1|; PP_02961 8e-64 Click
452466557..2466943 PHAGE_Marino_P12026: hypothetical protein; PP_02962; phage(gi399528327) 4e-12 Click
462466998..2467489 PHAGE_Salico_CGphi29: hypothetical protein; PP_02963; phage(gi472340186) 1e-12 Click
472467501..2467836 hypothetical protein B479_19980 [Pseudomonas putida HB3267] gi|431803928|ref|YP_007230831.1|; PP_02964 4e-28 Click
48complement(2467889..2468020) hypothetical; PP_02965 0.0 Click
492468126..2469325 PHAGE_Pseudo_vB_PaeS_PMG1: tail tape measure protein; PP_02966; phage(gi374531664) 2e-52 Click
502469289..2470503 PHAGE_Pseudo_MP42: putative tail component protein; PP_02967; phage(gi399528622) 2e-09 Click
512470602..2470964 PHAGE_Vibrio_vB_VpaS_MAR10: tail tape measure protein; PP_02968; phage(gi428782128) 4e-08 Click
522470997..2471581 PHAGE_Yersin_PY54: hypothetical protein PY54p16; PP_02969; phage(gi33770525) 5e-19 Click
532471581..2472183 PHAGE_Yersin_PY54: hypothetical protein PY54p17; PP_02970; phage(gi33770526) 2e-32 Click
542472186..2472584 PHAGE_Yersin_PY54: hypothetical protein PY54p19; PP_02971; phage(gi33770528) 3e-31 Click
552472584..2473732 PHAGE_Yersin_PY54: tail protein; PP_02972; phage(gi33770530) 1e-62 Click
562473740..2475470 PHAGE_Yersin_PY54: tail protein; PP_02973; phage(gi33770530) 3e-31 Click
57complement(2475565..2475750) hypothetical; PP_02974 0.0 Click
582475773..2476618 PHAGE_Burkho_KS9: tail tip fiber protein gp19; PP_02975; phage(gi255033750) 1e-39 Click
59complement(2476683..2476802) hypothetical; PP_02976 0.0 Click
602477136..2477642 hypothetical protein PSPTO_4039 [Pseudomonas syringae pv. tomato str. DC3000] gi|28871182|ref|NP_793801.1|; PP_02977 2e-86 Click
612477671..2478774 PHAGE_Entero_mEp390: tail fiber; PP_02978; phage(gi428782687) 2e-09 Click
622479192..2479470 tail fiber assembly domain-containing protein [Pseudomonas syringae pv. syringae B728a] gi|66046004|ref|YP_235845.1|; PP_02979 6e-40 Click
63complement(2479486..2479659) hypothetical; PP_02980 0.0 Click
642479766..2480299 PHAGE_Microc_LMM01: chitinase; PP_02981; phage(gi117530240) 2e-39 Click
652480296..2480826 PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; PP_02982; phage(gi16765210) 9e-12 Click
66complement(2481270..2481635) hypothetical; PP_02984 0.0 Click
672481741..2481911 PHAGE_Burkho_phiE125: DNA adenine methylase; PP_02983; phage(gi17975188) 7e-08 Click
682496315..2496326 attR    ATGATGACAAGG 0.0 Click

Region 3, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(3067029..3067688) PHAGE_Entero_ST64T: C2; PP_03659; phage(gi24371557) 9e-53 Click
23067830..3068267 hypothetical protein Psyr_4602 [Pseudomonas syringae pv. syringae B728a] gi|66047829|ref|YP_237670.1|; PP_03660 3e-74 Click
33068627..3069016 PHAGE_Erwini_PEp14: holin; PP_03661; phage(gi374531877) 3e-07 Click
43068997..3069335 PHAGE_Erwini_PEp14: hypothetical protein; PP_03662; phage(gi374531878) 6e-06 Click
53069382..3069972 PHAGE_Entero_SfV: hypothetical protein SfVp09; PP_03663; phage(gi19548999) 6e-20 Click
63069969..3070157 PHAGE_Entero_SfV: hypothetical protein SfVp10; PP_03664; phage(gi19549000) 9e-08 Click
73070176..3071672 PHAGE_Entero_SfV: tail sheath protein; PP_03665; phage(gi19549001) 5e-148 Click
83071732..3072079 PHAGE_Entero_SfV: hypothetical protein SfVp12; PP_03666; phage(gi19549002) 1e-18 Click
93072076..3072372 PHAGE_Entero_SfV: hypothetical protein SfVp13; PP_03667; phage(gi19549003) 2e-14 Click
103072503..3074611 PHAGE_Entero_SfV: tail protein; PP_03668; phage(gi19549004) 6e-38 Click
113074608..3075930 PHAGE_Entero_SfV: tail/DNA circulation protein; PP_03669; phage(gi19549005) 2e-43 Click
123075923..3076138 PHAGE_Entero_SfV: tail protein; PP_03670; phage(gi19549006) 2e-08 Click
133076093..3076974 PHAGE_Entero_SfV: tail protein; PP_03671; phage(gi19549006) 2e-43 Click
143076971..3077483 PHAGE_Entero_SfV: tail protein; PP_03672; phage(gi19549007) 1e-21 Click
15complement(3077538..3077687) hypothetical; PP_03673 0.0 Click
163077803..3078105 PHAGE_Entero_SfV: tail protein; PP_03674; phage(gi19549009) 5e-06 Click
173078089..3078829 PHAGE_Entero_SfV: tail protein; PP_03675; phage(gi19549009) 1e-45 Click
183078817..3079278 PHAGE_Entero_SfV: tail protein; PP_03676; phage(gi19548988) 2e-10 Click
193079366..3079674 PHAGE_Haemop_SuMu: putative phage-related tail fiber protein; PP_03677; phage(gi418489073) 3e-05 Click
203079674..3080609 PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; PP_03678; phage(gi414087138) 2e-06 Click
213080618..3080767 hypothetical; PP_03679 0.0 Click
223080821..3081795 PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PP_03680; phage(gi414086784) 2e-32 Click

Region 4, total : 11 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
13453150..3453161 attL    AAAGCTTCCAGC 0.0 Click
23462129..3462782 PHAGE_Entero_IME10: repressor protein; PP_04117; phage(gi422934295) 6e-41 Click
33462911..3463159 PHAGE_Pseudo_F116: hypothetical protein F116p28; PP_04118; phage(gi56692946) 8e-07 Click
43463352..3463681 hypothetical protein Psyr_3867 [Pseudomonas syringae pv. syringae B728a] gi|66047094|ref|YP_236935.1|; PP_04119 2e-58 Click
5complement(3463691..3464182) hypothetical protein Psyr_3866 [Pseudomonas syringae pv. syringae B728a] gi|66047093|ref|YP_236934.1|; PP_04120 9e-85 Click
63464300..3464851 hypothetical protein Psyr_3865 [Pseudomonas syringae pv. syringae B728a] gi|66047092|ref|YP_236933.1|; PP_04121 8e-94 Click
73464963..3467368 PHAGE_Synech_S_SSM5: hypothetical protein; PP_04122; phage(gi326784349) 1e-07 Click
8complement(3467491..3467964) PHAGE_Emilia_86: hypothetical protein EhV367; PP_04123; phage(gi73852841) 4e-05 Click
9complement(3468344..3469069) PHAGE_Vibrio_11895_B1: hypothetical protein; PP_04124; phage(gi472340083) 3e-13 Click
10complement(3469412..3470674) PHAGE_Serrat_phiMAM1: putative phage tail fiber; PP_04125; phage(gi440789465) 1e-12 Click
113472285..3472404 hypothetical; PP_04126 0.0 Click
123472887..3472898 attR    AAAGCTTCCAGC 0.0 Click
13complement(3472967..3474436) PROPHAGE_Escher_Sakai: putative integrase; PP_04127; phage(gi15834496) 4e-12 Click

Region 5, total : 46 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
15122947..5122958 attL    CTCAAACTGAAT 0.0 Click
25123281..5124456 PROPHAGE_Escher_CFT073: putative prophage integrase; PP_06063; phage(gi26250313) 4e-77 Click
3complement(5124723..5124986) hypothetical protein HP15_4152 [Marinobacter adhaerens HP15] gi|385333893|ref|YP_005887844.1|; PP_06064 7e-09 Click
4complement(5125582..5125701) prophage PSPPH01, ImpB/MucB/SamB family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71733612|ref|YP_272969.1|; PP_06065 5e-06 Click
55126217..5127062 hypothetical protein SUN_1444 [Sulfurovum sp. NBC37-1] gi|152993031|ref|YP_001358752.1|; PP_06066 3e-10 Click
65128477..5129475 hypothetical protein M5M_14860 [Simiduia agarivorans SA1 = DSM 21679] gi|410665465|ref|YP_006917836.1|; PP_06067 4e-20 Click
75129922..5130089 PHAGE_Pseudo_F116: hypothetical protein F116p67; PP_06068; phage(gi56692976) 9e-08 Click
8complement(5131828..5132436) PHAGE_Burkho_KS9: DNA adenine methylase gp25; PP_06069; phage(gi255033757) 1e-70 Click
9complement(5132721..5133266) PHAGE_Salmon_PVP_SE1: lysozyme; PP_06070; phage(gi363539668) 2e-50 Click
10complement(5133311..5134351) PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PP_06071; phage(gi428782753) 4e-49 Click
11complement(5134429..5134554) prophage PSPPH02, tail protein X [Pseudomonas syringae pv. phaseolicola 1448A] gi|71736012|ref|YP_274109.1|; PP_06072 3e-11 Click
12complement(5134610..5135446) PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PP_06073; phage(gi428782751) 2e-22 Click
13complement(5135465..5137264) PHAGE_Parame_FR483: hypothetical protein FR483_N565L; PP_06074; phage(gi155370663) 6e-13 Click
14complement(5137264..5138343) PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; PP_06075; phage(gi418489066) 2e-09 Click
15complement(5138371..5138493) hypothetical protein PSF113_4291 [Pseudomonas fluorescens F113] gi|378952194|ref|YP_005209682.1|; PP_06076 2e-06 Click
16complement(5138483..5138710) hypothetical protein PSPTO_3394 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870558|ref|NP_793177.1|; PP_06077 1e-18 Click
17complement(5138815..5139318) PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PP_06078; phage(gi428782747) 3e-29 Click
18complement(5139331..5140134) PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PP_06079; phage(gi428782746) 1e-63 Click
19complement(5140538..5140693) hypothetical; PP_06080 0.0 Click
20complement(5140695..5141339) PHAGE_Burkho_BcepMu: gp52; PP_06081; phage(gi48696962) 4e-40 Click
21complement(5141347..5141643) PROPHAGE_Salmon_Ty2: variable tail fiber protein; PP_06082; phage(gi29143754) 3e-06 Click
22complement(5141640..5143049) PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; PP_06083; phage(gi145708097) 2e-89 Click
23complement(5143046..5143660) PHAGE_Ralsto_phiRSA1: phage tail protein gpI; PP_06084; phage(gi145708096) 2e-54 Click
24complement(5143653..5144525) PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; PP_06085; phage(gi17313237) 7e-73 Click
25complement(5144531..5144857) PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PP_06086; phage(gi428782737) 1e-19 Click
26complement(5144863..5145060) hypothetical protein PSPTO_3402 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870566|ref|NP_793185.1|; PP_06087 5e-07 Click
27complement(5145164..5145700) PHAGE_Burkho_phi52237: phage baseplate assembly protein; PP_06088; phage(gi72537705) 2e-15 Click
28complement(5145675..5146163) hypothetical protein PSPTO_3404 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870568|ref|NP_793187.1|; PP_06089 3e-66 Click
29complement(5146233..5146889) PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PP_06090; phage(gi428782733) 4e-14 Click
30complement(5146886..5147200) hypothetical protein PSF113_4303 [Pseudomonas fluorescens F113] gi|378952206|ref|YP_005209694.1|; PP_06091 7e-26 Click
31complement(5147203..5147424) hypothetical protein NCGM2_3867 [Pseudomonas aeruginosa NCGM2.S1] gi|386066789|ref|YP_005982093.1|; PP_06092 3e-06 Click
32complement(5147426..5148334) PHAGE_Burkho_BcepNazgul: capsid protein E; PP_06093; phage(gi34610166) 6e-28 Click
33complement(5148324..5148443) hypothetical; PP_06094 0.0 Click
34complement(5148456..5148707) hypothetical protein NCGM2_3869 [Pseudomonas aeruginosa NCGM2.S1] gi|386066791|ref|YP_005982095.1|; PP_06095 3e-11 Click
35complement(5148781..5149182) hypothetical protein NCGM2_3870 [Pseudomonas aeruginosa NCGM2.S1] gi|386066792|ref|YP_005982096.1|; PP_06096 5e-34 Click
36complement(5149230..5149946) PHAGE_Gifsy_1: bacteriophage prohead protease; Lambda gpC homolog; PP_06097; phage(gi169257232) 1e-18 Click
37complement(5149949..5150278) PHAGE_Burkho_AH2: portal protein; PP_06098; phage(gi399529104) 2e-11 Click
38complement(5150301..5151188) PHAGE_Burkho_AH2: portal protein; PP_06099; phage(gi399529104) 3e-14 Click
39complement(5151483..5151698) hypothetical protein NCGM2_3872 [Pseudomonas aeruginosa NCGM2.S1] gi|386066794|ref|YP_005982098.1|; PP_06100 6e-19 Click
40complement(5151709..5153535) PHAGE_Vibrio_vB_VpaM_MAR: terminase large subunit; PP_06101; phage(gi428782726) 2e-38 Click
41complement(5153555..5154076) PHAGE_Entero_mEp237: terminase small subunit nu1; PP_06102; phage(gi435439266) 5e-09 Click
42complement(5154233..5154379) hypothetical protein PSPTO_3414 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870578|ref|NP_793197.1|; PP_06103 4e-19 Click
43complement(5154381..5154767) PHAGE_Pseudo_phiCTX: predicted lysis; PP_06104; phage(gi17313230) 6e-09 Click
44complement(5155557..5155895) hypothetical protein PSPTO_3417 [Pseudomonas syringae pv. tomato str. DC3000] gi|28870581|ref|NP_793200.1|; PP_06105 5e-58 Click
45complement(5155909..5156688) PHAGE_Entero_phiFL4A: VirE domain protein; PP_06106; phage(gi281416460) 5e-33 Click
46complement(5156699..5158105) PHAGE_Stenot_S1: putative primase; PP_06107; phage(gi213163899) 9e-53 Click
47complement(5158315..5158833) PHAGE_Burkho_Bcep176: gp14; PP_06108; phage(gi77864639) 3e-08 Click
485163955..5163966 attR    CTCAAACTGAAT 0.0 Click