Lactobacillus gasseri 202-4 , whole genome shotgun [asmbl_id: NC_000000].1820250, GC%: 34.89%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 8 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1570815..570826 attL    TCGTTTTAGTTA 0.0 Click
2complement(576464..577858) PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; HMPREF0890_0873; phage(gi15834112) 7e-117 Click
3complement(577869..578393) PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; HMPREF0890_0874; phage(gi15834113) 1e-40 Click
4complement(578398..579321) PHAGE_Thermu_26: phage XerD-like integrase; HMPREF0890_0875; phage(gi157265417) 2e-15 Click
5complement(579324..580640) tRNA:M(5)U-54 methyltransferase; HMPREF0890_0876 0.0 Click
6complement(580738..582819) PHAGE_Acanth_mimivirus: DNA topoisomerase 1; HMPREF0890_0877; phage(gi311977597) 2e-103 Click
7complement(582885..583730) DNA protecting protein DprA; HMPREF0890_0878 0.0 Click
8complement(583782..584534) PHAGE_Cafete_BV_PW1: putative ribonuclease HII; HMPREF0890_0879; phage(gi310831397) 1e-27 Click
9complement(584531..585370) ribosome biogenesis GTP-binding protein YlqF; HMPREF0890_0880 0.0 Click
10complement(585373..586821) PHAGE_Thermo_THSA_485A: glycoside hydrolase family 25; HMPREF0890_0881; phage(gi397912616) 8e-07 Click
11600625..600636 attR    TCGTTTTAGTTA 0.0 Click

Region 2, total : 64 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11570786..1570798 attL    AAAATATGTCTGA 0.0 Click
21570791..1571726 PHAGE_Lactoc_949: putative ribonucleotide diphosphate reductase alpha subunit; HMPREF0890_1107; phage(gi327197952) 9e-24 Click
3complement(1571806..1572728) PHAGE_Cafete_BV_PW1: putative DNA N6-adenine methyltransferase; HMPREF0890_0158; phage(gi310831004) 4e-09 Click
4complement(1572752..1573720) PHAGE_Achole_L2: integrase; HMPREF0890_0159; phage(gi9626516) 4e-14 Click
5complement(1573764..1574954) PHAGE_Cafete_BV_PW1: putative type I restriction modification enzyme, M and S domains; HMPREF0890_0160; phage(gi310831373) 1e-12 Click
6complement(1574980..1576494) PHAGE_Acinet_Bphi_B1251: putative restriction-modification protein; HMPREF0890_0161; phage(gi423261981) 3e-40 Click
7complement(1576676..1577437) conserved hypothetical protein; HMPREF0890_0162 0.0 Click
81577822..1578331 PHAGE_Bebaru_virus: non structural polyprotein; HMPREF0890_0009; phage(gi379765070) 7e-11 Click
91578347..1579948 PHAGE_Bacill_SPBc2: ABC transporter; HMPREF0890_0010; phage(gi9630145) 7e-18 Click
10complement(1579999..1580682) glutamine amidotransferase, class II/dipeptidase; HMPREF0890_0011 0.0 Click
11complement(1580704..1581918) PHAGE_Burkho_phi1026b: gp59; HMPREF0890_0012; phage(gi38707949) 7e-06 Click
121582095..1582967 conserved hypothetical protein; HMPREF0890_0013 0.0 Click
131583028..1583450 conserved hypothetical protein; HMPREF0890_0014 0.0 Click
141583847..1583858 attL    TCAACAGGATTT 0.0 Click
15complement(1583871..1584305) conserved hypothetical protein; HMPREF0890_0956 0.0 Click
16complement(1584312..1584755) conserved hypothetical protein; HMPREF0890_0957 0.0 Click
17complement(1584876..1585529) tRNA (guanine-N(7)-)-methyltransferase; HMPREF0890_0958 0.0 Click
18complement(1585541..1586752) bacterial ABC transporter protein EcsB; HMPREF0890_0959 0.0 Click
19complement(1586745..1587491) PHAGE_Amsact_: putative ATP-binding cassette transporter; HMPREF0890_0960; phage(gi9964444) 1e-20 Click
201587587..1588021 PHAGE_Strept_phiSASD1: gp4; HMPREF0890_0961; phage(gi298103512) 5e-16 Click
211588105..1588593 PHAGE_Saimir_2: unnamed protein product; HMPREF0890_0962; phage(gi9626029) 2e-06 Click
221588593..1588943 conserved hypothetical protein; HMPREF0890_0963 0.0 Click
231589065..1589961 foldase protein PrsA 1; HMPREF0890_0964 0.0 Click
24complement(1590016..1590993) 3'-5' exoribonuclease YhaM; HMPREF0890_0965 0.0 Click
25complement(1590996..1593431) PHAGE_Glossi_virus: hypothetical protein SGHV062; HMPREF0890_0966; phage(gi168804078) 2e-10 Click
26complement(1593412..1594635) PHAGE_Lister_A511: gp114; HMPREF0890_0967; phage(gi157325069) 5e-07 Click
27complement(1594641..1594994) conserved hypothetical protein; HMPREF0890_0968 0.0 Click
28complement(1595020..1597077) penicillin-binding protein 1F; HMPREF0890_0969 0.0 Click
291597184..1598032 pseudouridine synthase, RluA family; HMPREF0890_0970 0.0 Click
30complement(1598065..1598153) tRNA 0.0 Click
311598298..1599617 PHAGE_Bacill_SPBc2: IMPB/MUCB/SAMB family protein; HMPREF0890_0972; phage(gi9630142) 1e-69 Click
321599610..1599993 conserved hypothetical protein; HMPREF0890_0973 0.0 Click
33complement(1600019..1600543) hydrolase, NUDIX family; HMPREF0890_0974 0.0 Click
34complement(1600742..1601527) aminoglycoside phosphotransferase; HMPREF0890_0975 0.0 Click
35complement(1601527..1602564) beta-lactamase; HMPREF0890_0976 0.0 Click
36complement(1602959..1603330) conserved hypothetical protein; HMPREF0890_0977 0.0 Click
37complement(1603330..1605222) PHAGE_Thermo_THSA_485A: SNF2-related protein; HMPREF0890_0978; phage(gi397912655) 1e-20 Click
38complement(1605203..1606495) conserved hypothetical protein; HMPREF0890_0979 0.0 Click
39complement(1606497..1609472) PHAGE_Entero_P1: Res; HMPREF0890_0980; phage(gi46401632) 5e-115 Click
40complement(1609477..1611387) PHAGE_Campyl_CPX: putative DNA methylase; HMPREF0890_0981; phage(gi371670951) 5e-33 Click
41complement(1611620..1612063) conserved hypothetical protein; HMPREF0890_0982 0.0 Click
42complement(1612072..1613274) PHAGE_Glossi_virus: hypothetical protein SGHV062; HMPREF0890_0983; phage(gi168804078) 9e-06 Click
43complement(1613258..1613485) conserved hypothetical protein; HMPREF0890_0984 0.0 Click
44complement(1613475..1614695) Zn-ribbon containing protein; HMPREF0890_0985 0.0 Click
451615054..1615587 DNA-directed RNA polymerase specialized sigma subunit; HMPREF0890_0986 0.0 Click
461615867..1616184 conserved hypothetical protein; HMPREF0890_0987 0.0 Click
471616181..1617320 PHAGE_Entero_phiFL4A: hypothetical protein; HMPREF0890_0988; phage(gi281416449) 3e-68 Click
481617322..1617873 PHAGE_Staphy_SMSAP5: hypothetical protein; HMPREF0890_0989; phage(gi422935814) 1e-48 Click
491617928..1619862 PHAGE_Strept_P9: polymerase; HMPREF0890_0990; phage(gi157311150) 0.0 Click
501620236..1622584 PHAGE_Lactob_A2: putative primase; HMPREF0890_0991; phage(gi22296557) 1e-50 Click
511622786..1623067 PHAGE_Strept_P9: hypothetical protein P9_gp18; HMPREF0890_0992; phage(gi157311153) 3e-14 Click
521623048..1624400 PHAGE_Entero_phiFL4A: DNA helicase; HMPREF0890_0993; phage(gi281416462) 8e-134 Click
531624397..1624864 restriction endonuclease; HMPREF0890_0994 0.0 Click
541625510..1625740 conserved hypothetical protein; HMPREF0890_0995 0.0 Click
551625918..1626052 conserved hypothetical protein; HMPREF0890_0996 0.0 Click
561626052..1627278 PHAGE_Strept_1: transferase; HMPREF0890_0997; phage(gi39653711) 3e-67 Click
571627351..1627971 conserved hypothetical protein; HMPREF0890_0998 0.0 Click
581627974..1628180 conserved hypothetical protein; HMPREF0890_0999 0.0 Click
591628280..1629842 PHAGE_Nocard_NBR1: terminase large subunit; HMPREF0890_1000; phage(gi372217589) 2e-90 Click
601629871..1631136 PHAGE_Klebsi_phiKO2: putative portal protein; HMPREF0890_1001; phage(gi46402090) 2e-70 Click
611631133..1631804 PHAGE_Geobac_E2: putative Clp peptidase; HMPREF0890_1002; phage(gi148747731) 2e-37 Click
621631824..1633002 PHAGE_Azospi_Cd: Phage major capsid protein; HMPREF0890_1003; phage(gi168495136) 1e-35 Click
631633297..1633680 PHAGE_Geobac_E2: putative head-tail adaptor; HMPREF0890_1004; phage(gi148747735) 4e-07 Click
641633667..1634077 PHAGE_Bacill_IEBH: holin; HMPREF0890_1005; phage(gi197261577) 3e-26 Click
651634077..1634955 PHAGE_Clostr_phiSM101: autolytic lysozyme; HMPREF0890_1006; phage(gi110804057) 9e-15 Click
661635696..1636580 PHAGE_Bacill_Gamma: site-specific recombinase; HMPREF0890_1007; phage(gi77020163) 8e-32 Click
671636788..1637357 site-specific recombinase, DNA invertase Pin related protein; HMPREF0890_1008 0.0 Click
681637350..1638927 PHAGE_Bacill_Gamma: site-specific recombinase; HMPREF0890_1009; phage(gi77020163) 4e-27 Click
691643693..1643704 attR    TCAACAGGATTT 0.0 Click
701650219..1650231 attR    AAAATATGTCTGA 0.0 Click