Vibrio cholerae B33 , whole genome shotgun sequence. [asmbl_id: NC_000000].4154698, GC%: 47.45%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 16 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1109979..109990 attL    AACCCAGCTCGC 0.0 Click
2110324..111283 PHAGE_Strept_MM1: integrase; VCE_000102; phage(gi15088744) 1e-08 Click
3111540..112484 IncF plasmid conjugative transfer pilus assembly protein TraF; VCE_000103 0.0 Click
4112487..113875 IncF plasmid conjugative transfer pilus assembly protein TraH; VCE_000104 0.0 Click
5113879..117448 IncF plasmid conjugative transfer protein TraG; VCE_000105 0.0 Click
6complement(118500..118799) hypothetical protein; VCE_000106 0.0 Click
7complement(118796..119344) soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); VCE_000107 0.0 Click
8complement(119331..120059) PHAGE_Vibrio_VvAW1: hypothetical protein; VCE_000108; phage(gi460042923) 2e-39 Click
9complement(119980..120849) hypothetical protein; VCE_000109 0.0 Click
10complement(120905..121156) PHAGE_Aggreg_S1249: phage protein; VCE_000110; phage(gi273809591) 8e-09 Click
11121274..121921 PHAGE_Entero_IME10: repressor protein; VCE_000111; phage(gi422934295) 8e-36 Click
12122178..123767 PHAGE_Lausan: putative translation elongation factor 1-alpha; VCE_000112; phage(gi327409596) 4e-05 Click
13complement(123889..125160) PHAGE_Cafete_BV_PW1: putative superfamily II helicase/eIF-4AIII; VCE_000113; phage(gi310831360) 7e-44 Click
14complement(125248..125970) PHAGE_Parame_NY2A: hypothetical protein NY2A_B016L; VCE_000114; phage(gi157952320) 3e-08 Click
15126315..127592 PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; VCE_000115; phage(gi163932195) 9e-07 Click
16127961..128860 PHAGE_Pseudo_73: hypothetical protein ORF037; VCE_000116; phage(gi148912865) 8e-09 Click
17128885..130423 PHAGE_Acanth_moumouvirus: asparaginyl t-RNA synthetase; VCE_000117; phage(gi441432571) 1e-09 Click
18138095..138106 attR    AACCCAGCTCGC 0.0 Click

Region 2, total : 7 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11099111..1100190 PHAGE_Vibrio_CTX: RstA; VCE_001022; phage(gi332672300) 0.0 Click
21100171..1100551 PHAGE_Vibrio_CTX: RstB; VCE_001023; phage(gi332672301) 1e-69 Click
31100687..1100935 PHAGE_Vibrio_CTX: Cep; VCE_001024; phage(gi332672302) 8e-38 Click
41101042..1102229 PHAGE_Vibrio_CTX: hypothetical protein; VCE_001025; phage(gi332672303) 0.0 Click
51102229..1102519 PHAGE_Vibrio_CTX: Ace; VCE_001026; phage(gi332672304) 1e-50 Click
61102516..1103715 PHAGE_Vibrio_CTX: Zot; VCE_001027; phage(gi332672305) 0.0 Click
71103814..1104590 PHAGE_Vibrio_CTX: CtxA; VCE_001028; phage(gi332672306) 3e-154 Click

Region 3, total : 15 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(3380469..3380675) PHAGE_Entero_P4: transcriptional regulator; VCE_003057; phage(gi9627517) 3e-09 Click
23380789..3381265 DNA repair protein RadC; VCE_003058 0.0 Click
33381262..3381399 hypothetical protein; VCE_003059 0.0 Click
4complement(3381495..3382190) hypothetical protein; VCE_003060 0.0 Click
5complement(3382187..3383059) PHAGE_Entero_Sf6: putative transposase OrfB; VCE_003061; phage(gi41057343) 3e-115 Click
6complement(3383056..3383400) PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; VCE_003062; phage(gi24373865) 7e-08 Click
7complement(3383407..3384366) PHAGE_Mannhe_phiMHaA1: tail protein T; VCE_003063; phage(gi109289951) 4e-25 Click
8complement(3384582..3384941) PHAGE_Entero_Mu: hypothetical protein Mup41; VCE_003064; phage(gi9633532) 2e-09 Click
9complement(3384990..3385367) hypothetical protein; VCE_003065 0.0 Click
10complement(3385422..3386000) hypothetical protein; VCE_003066 0.0 Click
11complement(3386326..3386700) PHAGE_Entero_Mu: Mor; VCE_003067; phage(gi9633507) 3e-07 Click
12complement(3387102..3387368) phage protein; VCE_003068 0.0 Click
13complement(3387510..3387971) hypothetical protein; VCE_003069 0.0 Click
14complement(3387974..3389014) PHAGE_Pseudo_B3: putative transposase B subunit; VCE_003070; phage(gi56692579) 1e-45 Click
15complement(3389055..3390812) PHAGE_Pseudo_B3: putative transposase A subunit; VCE_003071; phage(gi56692580) 2e-93 Click

Region 4, total : 40 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
13775891..3775902 attL    AATCATCACAGC 0.0 Click
2complement(3779795..3781426) PHAGE_Vibrio_K139: hypothetical protein K139p44; VCE_003441; phage(gi17975149) 0.0 Click
3complement(3781423..3781896) PHAGE_Vibrio_K139: hypothetical protein K139p43; VCE_003442; phage(gi17975148) 5e-83 Click
4complement(3781884..3782777) PHAGE_Vibrio_K139: hypothetical protein K139p42; VCE_003443; phage(gi17975147) 8e-166 Click
5complement(3782780..3783304) PHAGE_Vibrio_K139: putative tail fiber assembly protein; VCE_003444; phage(gi17975146) 7e-99 Click
6complement(3783304..3785166) PHAGE_Vibrio_K139: putative tail fiber protein; VCE_003445; phage(gi17975145) 0.0 Click
7complement(3785163..3785822) PHAGE_Vibrio_K139: hypothetical protein K139p39; VCE_003446; phage(gi17975144) 4e-128 Click
8complement(3785819..3787018) PHAGE_Vibrio_K139: hypothetical protein K139p38; VCE_003447; phage(gi17975143) 0.0 Click
9complement(3787015..3787356) PHAGE_Vibrio_K139: hypothetical protein K139p37; VCE_003448; phage(gi17975142) 2e-57 Click
10complement(3787337..3789154) PHAGE_Vibrio_K139: putative tail length determinator; VCE_003449; phage(gi17975141) 0.0 Click
11complement(3789166..3789300) PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_37; VCE_003450; phage(gi148727165) 3e-06 Click
12complement(3789351..3789632) PHAGE_Vibrio_K139: hypothetical protein K139p35; VCE_003451; phage(gi17975140) 7e-48 Click
13complement(3789629..3789823) PHAGE_Vibrio_K139: hypothetical protein K139p35; VCE_003452; phage(gi17975140) 2e-27 Click
14complement(3789840..3790190) PHAGE_Vibrio_K139: hypothetical protein K139p34; VCE_003453; phage(gi17975139) 2e-60 Click
15complement(3790156..3790743) PHAGE_Vibrio_K139: putative endolysin; VCE_003454; phage(gi17975138) 2e-112 Click
16complement(3790730..3790999) PHAGE_Vibrio_K139: hypothetical protein K139p32; VCE_003455; phage(gi17975137) 2e-39 Click
17complement(3791178..3791636) PHAGE_Vibrio_K139: putative tail tube protein; VCE_003456; phage(gi17975135) 1e-83 Click
18complement(3791636..3792745) PHAGE_Vibrio_K139: putative tail sheath protein; VCE_003457; phage(gi17975134) 0.0 Click
19complement(3792747..3793418) PHAGE_Vibrio_K139: putative tail completion protein; VCE_003458; phage(gi17975132) 4e-75 Click
20complement(3793393..3793881) PHAGE_Vibrio_K139: hypothetical protein K139p26; VCE_003459; phage(gi17975131) 3e-91 Click
21complement(3793878..3794339) PHAGE_Vibrio_K139: putative head completion protein; VCE_003460; phage(gi17975130) 1e-81 Click
22complement(3794446..3795162) PHAGE_Vibrio_K139: putative terminase, endonuclease subunit; VCE_003461; phage(gi17975129) 2e-135 Click
23complement(3795178..3796188) PHAGE_Vibrio_K139: putative major capsid protein; VCE_003462; phage(gi17975128) 3e-173 Click
24complement(3796225..3797034) PHAGE_Vibrio_K139: putative capsid scaffolding protein; VCE_003463; phage(gi17975127) 2e-158 Click
253797298..3799115 PHAGE_Vibrio_K139: putative terminase, ATPase subunit; VCE_003464; phage(gi17975126) 0.0 Click
263799097..3800158 PHAGE_Vibrio_K139: putative capsid portal protein; VCE_003465; phage(gi17975125) 0.0 Click
273800142..3800357 PHAGE_Vibrio_K139: hypothetical protein K139p19; VCE_003466; phage(gi17975124) 5e-36 Click
283801163..3801501 PHAGE_Vibrio_K139: hypothetical protein K139p16; VCE_003467; phage(gi17975121) 1e-56 Click
29complement(3802121..3804706) PHAGE_Vibrio_K139: rep; VCE_003468; phage(gi17975119) 0.0 Click
30complement(3804703..3805341) PHAGE_Vibrio_K139: hypothetical protein K139p13; VCE_003469; phage(gi17975118) 1e-97 Click
31complement(3805284..3805394) hypothetical protein; VCE_003470 0.0 Click
32complement(3805391..3806008) PHAGE_Vibrio_K139: putative DNA methyltransferase; VCE_003471; phage(gi17975117) 9e-119 Click
33complement(3806005..3806268) PHAGE_Vibrio_K139: hypothetical protein K139p11; VCE_003472; phage(gi17975116) 1e-38 Click
34complement(3806482..3806892) PHAGE_Vibrio_K139: hypothetical protein K139p09; VCE_003473; phage(gi17975114) 4e-34 Click
35complement(3806889..3807428) PHAGE_Vibrio_K139: hypothetical protein K139p08; VCE_003474; phage(gi17975113) 7e-94 Click
36complement(3807504..3807938) PHAGE_Vibrio_K139: hypothetical protein K139p07; VCE_003475; phage(gi17975112) 2e-78 Click
37complement(3807951..3808490) PHAGE_Vibrio_K139: CII; VCE_003476; phage(gi17975111) 1e-95 Click
38complement(3808601..3808882) PHAGE_Vibrio_K139: Cox; VCE_003477; phage(gi17975110) 3e-34 Click
393809349..3809606 PHAGE_Vibrio_K139: CI; VCE_003478; phage(gi17975109) 5e-42 Click
403809632..3810537 PHAGE_Vibrio_K139: hypothetical protein K139p03; VCE_003479; phage(gi17975108) 1e-173 Click
413810731..3810742 attR    AATCATCACAGC 0.0 Click
423810950..3811987 PHAGE_Vibrio_K139: Int; VCE_003480; phage(gi17975106) 0.0 Click