Vibrio cholerae RC9 , whole genome shotgun sequence. [asmbl_id: NC_000000].4211011, GC%: 47.67%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
12701240..2709132 PHAGE_Acanth_mimivirus: putative alpha/beta hydrolase; VCC_002499; phage(gi311977788) 4e-08 Click
22701438..2701453 attL    TTCGCATCGACATCCA 0.0 Click
3complement(2709818..2710189) PHAGE_Vibrio_CTX: RstB; VCC_002500; phage(gi332672297) 5e-69 Click
4complement(2710170..2711249) PHAGE_Vibrio_CTX: RstA; VCC_002501; phage(gi332672300) 0.0 Click
52711375..2711713 PHAGE_Vibrio_CTX: RstR; VCC_002502; phage(gi332672299) 2e-57 Click
62712054..2712206 hypothetical protein; VCC_002503 0.0 Click
7complement(2712315..2712689) PHAGE_Vibrio_CTX: CtxB; VCC_002504; phage(gi332672307) 7e-66 Click
8complement(2712686..2713462) PHAGE_Vibrio_CTX: CtxA; VCC_002505; phage(gi332672306) 3e-154 Click
9complement(2713554..2714753) PHAGE_Vibrio_CTX: Zot; VCC_002506; phage(gi332672305) 0.0 Click
10complement(2714750..2715040) PHAGE_Vibrio_CTX: Ace; VCC_002507; phage(gi332672304) 1e-50 Click
11complement(2715040..2716227) PHAGE_Vibrio_CTX: hypothetical protein; VCC_002508; phage(gi332672303) 0.0 Click
12complement(2716334..2716582) PHAGE_Vibrio_CTX: Cep; VCC_002509; phage(gi332672302) 8e-38 Click
13complement(2716718..2717098) PHAGE_Vibrio_CTX: RstB; VCC_002510; phage(gi332672301) 1e-70 Click
14complement(2717079..2718032) PHAGE_Vibrio_CTX: RstA; VCC_002511; phage(gi332672300) 0.0 Click
152718066..2718354 PHAGE_Vibrio_CTX: RstR; VCC_002512; phage(gi332672299) 7e-48 Click
162718695..2718847 hypothetical protein; VCC_002513 0.0 Click
17complement(2718844..2719428) hypothetical protein; VCC_002514 0.0 Click
18complement(2719666..2720358) hypothetical protein; VCC_002515 0.0 Click
19complement(2720488..2720772) hypothetical protein; VCC_002516 0.0 Click
20complement(2720777..2722291) PHAGE_Entero_Ike: G II protein; VCC_002517; phage(gi9626233) 2e-62 Click
212722522..2723073 phage protein; VCC_002518 0.0 Click
222723382..2723735 PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; VCC_002519; phage(gi24373865) 7e-08 Click
232723732..2724604 PHAGE_Entero_Sf6: putative transposase OrfB; VCC_002520; phage(gi41057343) 3e-115 Click
242734124..2734139 attR    TTCGCATCGACATCCA 0.0 Click

Region 2, total : 15 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(3076029..3076235) PHAGE_Entero_P4: transcriptional regulator; VCC_002812; phage(gi9627517) 3e-09 Click
23076349..3076825 DNA repair protein RadC; VCC_002813 0.0 Click
33076822..3076959 hypothetical protein; VCC_002814 0.0 Click
4complement(3077055..3077750) hypothetical protein; VCC_002815 0.0 Click
5complement(3077747..3078619) PHAGE_Entero_Sf6: putative transposase OrfB; VCC_002816; phage(gi41057343) 3e-115 Click
6complement(3078616..3078960) PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; VCC_002817; phage(gi24373865) 7e-08 Click
7complement(3078967..3079926) PHAGE_Mannhe_phiMHaA1: tail protein T; VCC_002818; phage(gi109289951) 4e-25 Click
8complement(3080142..3080501) PHAGE_Entero_Mu: hypothetical protein Mup41; VCC_002819; phage(gi9633532) 2e-09 Click
9complement(3080550..3080927) hypothetical protein; VCC_002820 0.0 Click
10complement(3080982..3081560) hypothetical protein; VCC_002821 0.0 Click
11complement(3081886..3082260) PHAGE_Entero_Mu: Mor; VCC_002822; phage(gi9633507) 3e-07 Click
12complement(3082662..3082928) phage protein; VCC_002823 0.0 Click
13complement(3083070..3083531) hypothetical protein; VCC_002824 0.0 Click
14complement(3083534..3084574) PHAGE_Pseudo_B3: putative transposase B subunit; VCC_002825; phage(gi56692579) 1e-45 Click
15complement(3084615..3086372) PHAGE_Pseudo_B3: putative transposase A subunit; VCC_002826; phage(gi56692580) 2e-93 Click

Region 3, total : 40 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
13471453..3471464 attL    AATCATCACAGC 0.0 Click
2complement(3475357..3476988) PHAGE_Vibrio_K139: hypothetical protein K139p44; VCC_003195; phage(gi17975149) 0.0 Click
3complement(3476985..3477458) PHAGE_Vibrio_K139: hypothetical protein K139p43; VCC_003196; phage(gi17975148) 5e-83 Click
4complement(3477446..3478339) PHAGE_Vibrio_K139: hypothetical protein K139p42; VCC_003197; phage(gi17975147) 8e-166 Click
5complement(3478342..3478866) PHAGE_Vibrio_K139: putative tail fiber assembly protein; VCC_003198; phage(gi17975146) 3e-98 Click
6complement(3478866..3480728) PHAGE_Vibrio_K139: putative tail fiber protein; VCC_003199; phage(gi17975145) 0.0 Click
7complement(3480725..3481384) PHAGE_Vibrio_K139: hypothetical protein K139p39; VCC_003200; phage(gi17975144) 4e-128 Click
8complement(3481381..3482580) PHAGE_Vibrio_K139: hypothetical protein K139p38; VCC_003201; phage(gi17975143) 0.0 Click
9complement(3482577..3482918) PHAGE_Vibrio_K139: hypothetical protein K139p37; VCC_003202; phage(gi17975142) 2e-57 Click
10complement(3482899..3484716) PHAGE_Vibrio_K139: putative tail length determinator; VCC_003203; phage(gi17975141) 0.0 Click
11complement(3484728..3484862) PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_37; VCC_003204; phage(gi148727165) 3e-06 Click
12complement(3484913..3485194) PHAGE_Vibrio_K139: hypothetical protein K139p35; VCC_003205; phage(gi17975140) 7e-48 Click
13complement(3485191..3485385) PHAGE_Vibrio_K139: hypothetical protein K139p35; VCC_003206; phage(gi17975140) 2e-27 Click
14complement(3485402..3485752) PHAGE_Vibrio_K139: hypothetical protein K139p34; VCC_003207; phage(gi17975139) 2e-60 Click
15complement(3485718..3486305) PHAGE_Vibrio_K139: putative endolysin; VCC_003208; phage(gi17975138) 2e-112 Click
16complement(3486292..3486561) PHAGE_Vibrio_K139: hypothetical protein K139p32; VCC_003209; phage(gi17975137) 2e-39 Click
17complement(3486740..3487198) PHAGE_Vibrio_K139: putative tail tube protein; VCC_003210; phage(gi17975135) 1e-83 Click
18complement(3487198..3488307) PHAGE_Vibrio_K139: putative tail sheath protein; VCC_003211; phage(gi17975134) 0.0 Click
19complement(3488309..3488980) PHAGE_Vibrio_K139: putative tail completion protein; VCC_003212; phage(gi17975132) 4e-75 Click
20complement(3488955..3489443) PHAGE_Vibrio_K139: hypothetical protein K139p26; VCC_003213; phage(gi17975131) 3e-91 Click
21complement(3489440..3489901) PHAGE_Vibrio_K139: putative head completion protein; VCC_003214; phage(gi17975130) 1e-81 Click
22complement(3490008..3490724) PHAGE_Vibrio_K139: putative terminase, endonuclease subunit; VCC_003215; phage(gi17975129) 2e-135 Click
23complement(3490740..3491750) PHAGE_Vibrio_K139: putative major capsid protein; VCC_003216; phage(gi17975128) 3e-173 Click
24complement(3491787..3492596) PHAGE_Vibrio_K139: putative capsid scaffolding protein; VCC_003217; phage(gi17975127) 2e-158 Click
253492860..3494677 PHAGE_Vibrio_K139: putative terminase, ATPase subunit; VCC_003218; phage(gi17975126) 0.0 Click
263494659..3495720 PHAGE_Vibrio_K139: putative capsid portal protein; VCC_003219; phage(gi17975125) 0.0 Click
273495704..3495919 PHAGE_Vibrio_K139: hypothetical protein K139p19; VCC_003220; phage(gi17975124) 5e-36 Click
283496725..3497063 PHAGE_Vibrio_K139: hypothetical protein K139p16; VCC_003221; phage(gi17975121) 1e-56 Click
29complement(3497683..3500268) PHAGE_Vibrio_K139: rep; VCC_003222; phage(gi17975119) 0.0 Click
30complement(3500265..3500903) PHAGE_Vibrio_K139: hypothetical protein K139p13; VCC_003223; phage(gi17975118) 1e-97 Click
31complement(3500846..3500956) hypothetical protein; VCC_003224 0.0 Click
32complement(3500953..3501570) PHAGE_Vibrio_K139: putative DNA methyltransferase; VCC_003225; phage(gi17975117) 9e-119 Click
33complement(3501567..3501830) PHAGE_Vibrio_K139: hypothetical protein K139p11; VCC_003226; phage(gi17975116) 1e-38 Click
34complement(3502044..3502454) PHAGE_Vibrio_K139: hypothetical protein K139p09; VCC_003227; phage(gi17975114) 4e-34 Click
35complement(3502451..3502990) PHAGE_Vibrio_K139: hypothetical protein K139p08; VCC_003228; phage(gi17975113) 7e-94 Click
36complement(3503066..3503500) PHAGE_Vibrio_K139: hypothetical protein K139p07; VCC_003229; phage(gi17975112) 2e-78 Click
37complement(3503513..3504052) PHAGE_Vibrio_K139: CII; VCC_003230; phage(gi17975111) 1e-95 Click
38complement(3504163..3504444) PHAGE_Vibrio_K139: Cox; VCC_003231; phage(gi17975110) 3e-34 Click
393504911..3505168 PHAGE_Vibrio_K139: CI; VCC_003232; phage(gi17975109) 5e-42 Click
403505194..3506099 PHAGE_Vibrio_K139: hypothetical protein K139p03; VCC_003233; phage(gi17975108) 1e-173 Click
413506293..3506304 attR    AATCATCACAGC 0.0 Click
423506512..3507549 PHAGE_Vibrio_K139: Int; VCC_003234; phage(gi17975106) 0.0 Click