Enterococcus faecalis ATCC 29200 , whole genome shotgun [asmbl_id: NC_000000].2936061, GC%: 37.49%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 17 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1601961..601973 attL    ATGAGAAAATAAA 0.0 Click
2complement(614418..615587) PHAGE_Bacill_phBC6A52: DNA integration/recombination/invertion protein; HMPREF0345_0613; phage(gi31415821) 6e-39 Click
3complement(615631..615861) excisionase; HMPREF0345_0614 0.0 Click
4615938..616010 tRNA 0.0 Click
5616180..616434 conserved hypothetical protein; HMPREF0345_0615 0.0 Click
6616762..617067 PROPHAGE_Escher_CFT073: transposase; HMPREF0345_0616; phage(gi26246249) 4e-08 Click
7complement(617372..618409) PHAGE_Lactob_KC5a: putative minor tail protein; HMPREF0345_0617; phage(gi90592623) 3e-11 Click
8complement(618435..619373) 2-dehydropantoate 2-reductase; HMPREF0345_0618 0.0 Click
9619508..619520 attR    ATGAGAAAATAAA 0.0 Click
10619819..619830 attL    CCTTTTTTCTAT 0.0 Click
11619898..620497 PHAGE_Bacill_phBC6A52: DNA integration/recombination/invertion protein; HMPREF0345_0619; phage(gi31415840) 2e-27 Click
12620546..620845 conserved hypothetical protein; HMPREF0345_0620 0.0 Click
13620921..621256 conserved hypothetical protein; HMPREF0345_0621 0.0 Click
14621376..621483 conserved hypothetical protein; HMPREF0345_0622 0.0 Click
15621526..621978 PROPHAGE_Brucel_1330: transposase, putative; HMPREF0345_0623; phage(gi23502708) 9e-22 Click
16622281..623468 PHAGE_Parame_1: UDP-glucose dehydrogenase; HMPREF0345_0624; phage(gi9632145) 4e-96 Click
17623505..624698 PHAGE_Parame_FR483: hypothetical protein FR483_N124R; HMPREF0345_0625; phage(gi155370222) 2e-50 Click
18624760..624932 hypothetical protein; HMPREF0345_0626 0.0 Click
19624925..625521 PHAGE_Staphy_phi7401PVL: phage tail tape measure protein; HMPREF0345_0627; phage(gi448244674) 3e-05 Click
20complement(625816..626634) PROPHAGE_Lactoc_Il1403: IS1077F transposase; HMPREF0345_0628; phage(gi15674057) 2e-162 Click
21complement(626631..627188) PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; HMPREF0345_0629; phage(gi17546156) 2e-10 Click
22635044..635055 attR    CCTTTTTTCTAT 0.0 Click

Region 2, total : 12 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11182723..1184144 PHAGE_Ostreo_2: 6-phosphogluconate dehydrogenase; HMPREF0345_1201; phage(gi314055262) 3e-47 Click
21184302..1184988 PHAGE_Feldma_virus: putative sensor histidine kinase; HMPREF0345_1202; phage(gi197322366) 5e-07 Click
31184999..1186507 PHAGE_Ectoca_1: EsV-1-65; HMPREF0345_1203; phage(gi13242537) 4e-11 Click
4complement(1186763..1186867) conserved hypothetical protein; HMPREF0345_1204 0.0 Click
5complement(1187039..1188355) PROPHAGE_Staphy_N315: transposase; HMPREF0345_1205; phage(gi15927655) 3e-69 Click
6complement(1188963..1189164) conserved hypothetical protein; HMPREF0345_1206 0.0 Click
7complement(1189423..1189584) hypothetical protein; HMPREF0345_1207 0.0 Click
81189608..1189846 MerR family transcriptional regulator; HMPREF0345_1208 0.0 Click
91189847..1190066 hypothetical protein; HMPREF0345_1209 0.0 Click
101190067..1190284 PHAGE_Tupaii_1: T54; HMPREF0345_1210; phage(gi14251046) 2e-05 Click
111190549..1190789 conserved hypothetical protein; HMPREF0345_1211 0.0 Click
121190812..1191191 PHAGE_Strept_1: tail protein; HMPREF0345_1212; phage(gi9629545) 3e-07 Click

Region 3, total : 54 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11224740..1224754 attL    AGCCTAGAATCCTTG 0.0 Click
2complement(1224829..1226010) PHAGE_Temper_1: integrase-like protein; HMPREF0345_1248; phage(gi16271777) 6e-55 Click
3complement(1226165..1226893) PHAGE_Mycoba_Myrna: gp260; HMPREF0345_1249; phage(gi203454821) 1e-05 Click
4complement(1226951..1227295) PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF0345_1250; phage(gi281416215) 3e-50 Click
5complement(1227314..1227646) PHAGE_Entero_phiFL3A: CI phage repressor protein; HMPREF0345_1251; phage(gi281416216) 3e-34 Click
61227943..1228161 PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; HMPREF0345_1252; phage(gi399498907) 1e-05 Click
7complement(1228158..1228541) PHAGE_Staphy_69: ORF039; HMPREF0345_1253; phage(gi66395329) 2e-16 Click
81228625..1228801 PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF0345_1254; phage(gi281416219) 1e-16 Click
91228817..1228945 conserved hypothetical protein; HMPREF0345_1255 0.0 Click
10complement(1228926..1229240) PHAGE_Clostr_phiC2: hypothetical protein phiC2p84; HMPREF0345_1256; phage(gi134287416) 2e-07 Click
111229316..1229585 conserved hypothetical protein; HMPREF0345_1257 0.0 Click
121229561..1229800 PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF0345_1258; phage(gi282598741) 4e-20 Click
131229867..1230166 PHAGE_Entero_phiFL2A: hypothetical protein; HMPREF0345_1259; phage(gi281416503) 1e-09 Click
141230163..1230387 PHAGE_Entero_phiFL2A: hypothetical protein; HMPREF0345_1260; phage(gi281416504) 1e-24 Click
151230384..1230497 PHAGE_Entero_phiFL2A: hypothetical protein; HMPREF0345_1261; phage(gi281416505) 7e-11 Click
161230490..1231461 PHAGE_Strept_1: hypothetical protein EJ-1p21; HMPREF0345_1262; phage(gi39653695) 1e-64 Click
171231424..1232239 PHAGE_Strept_3: hypothetical protein SpyM3_1132; HMPREF0345_1263; phage(gi28876302) 1e-62 Click
181232255..1233043 PHAGE_Lister_A118: gp49; HMPREF0345_1264; phage(gi16798836) 5e-62 Click
191233055..1233906 PHAGE_Bacill_phBC6A52: hypothetical protein BC2564; HMPREF0345_1265; phage(gi31415829) 4e-19 Click
201234045..1234314 PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF0345_1266; phage(gi282598762) 1e-08 Click
211234463..1234933 conserved hypothetical protein; HMPREF0345_1267 0.0 Click
221234953..1235558 PHAGE_Lister_B054: gp58; HMPREF0345_1268; phage(gi157325342) 3e-19 Click
231235574..1235780 conserved hypothetical protein; HMPREF0345_1269 0.0 Click
241235964..1236329 PHAGE_Entero_phiFL1A: hypothetical protein; HMPREF0345_1270; phage(gi281416352) 1e-31 Click
251236464..1236721 PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF0345_1271; phage(gi282598761) 6e-26 Click
261237300..1237767 PHAGE_Brocho_NF5: gp53; HMPREF0345_1272; phage(gi327197638) 2e-11 Click
271238067..1238138 tRNA 0.0 Click
281238294..1238701 PHAGE_Bacill_phBC6A52: hypothetical protein BC2580; HMPREF0345_1273; phage(gi31415845) 5e-14 Click
291238701..1239075 PHAGE_Bacill_phBC6A52: endonuclease; HMPREF0345_1274; phage(gi31415846) 8e-49 Click
301239187..1239639 PHAGE_Bacill_phBC6A52: Terminase small subunit; HMPREF0345_1275; phage(gi31415847) 5e-28 Click
311239636..1241363 PHAGE_Bacill_phBC6A52: Terminase large subunit; HMPREF0345_1276; phage(gi31415848) 0.0 Click
321241382..1242608 PHAGE_Bacill_phBC6A52: Portal protein; HMPREF0345_1277; phage(gi31415850) 2e-141 Click
331242580..1243152 PHAGE_Clostr_phi3626: putative prohead protease; HMPREF0345_1278; phage(gi20065968) 1e-33 Click
341243165..1244529 PHAGE_Bacill_phBC6A52: prohead protease; HMPREF0345_1279; phage(gi31415852) 2e-126 Click
351244522..1244812 PHAGE_Bacill_phBC6A52: hypothetical protein BC2588; HMPREF0345_1280; phage(gi31415853) 6e-23 Click
361244790..1245116 PHAGE_Bacill_phBC6A52: hypothetical protein BC2589; HMPREF0345_1281; phage(gi31415854) 9e-16 Click
371245106..1245444 PHAGE_Bacill_phBC6A52: hypothetical protein BC2590; HMPREF0345_1282; phage(gi31415855) 5e-28 Click
381245434..1245796 PHAGE_Bacill_phBC6A52: hypothetical protein BC2591; HMPREF0345_1283; phage(gi31415856) 1e-15 Click
391245793..1246437 PHAGE_Bacill_phBC6A52: hypothetical protein BC2592; HMPREF0345_1284; phage(gi31415857) 7e-20 Click
401246437..1246892 PHAGE_Bacill_phBC6A52: hypothetical protein BC2593; HMPREF0345_1285; phage(gi31415858) 5e-15 Click
411247084..1249387 PHAGE_Lister_2389: tail tape measure protein; HMPREF0345_1286; phage(gi17488515) 6e-108 Click
421249384..1250097 conserved hypothetical protein; HMPREF0345_1287 0.0 Click
431250094..1252393 PHAGE_Bacill_phBC6A52: endopeptidase; HMPREF0345_1288; phage(gi31415861) 6e-45 Click
441252509..1253384 PHAGE_Lactoc_bIL285: Orf55; HMPREF0345_1289; phage(gi13095735) 3e-17 Click
451253377..1253694 hypothetical protein; HMPREF0345_1290 0.0 Click
461253687..1254004 hypothetical protein; HMPREF0345_1291 0.0 Click
471254004..1254162 conserved hypothetical protein; HMPREF0345_1292 0.0 Click
481254163..1254460 conserved hypothetical protein; HMPREF0345_1293 0.0 Click
491254460..1254597 conserved bactriophage protein; HMPREF0345_1294 0.0 Click
501254631..1254864 PHAGE_Entero_phiFL4A: holin; HMPREF0345_1295; phage(gi281416487) 2e-26 Click
511254867..1255073 PHAGE_Entero_phiEf11: phage holin; HMPREF0345_1296; phage(gi282598749) 3e-31 Click
521255076..1256377 PHAGE_Entero_phiFL4A: endolysin; HMPREF0345_1297; phage(gi281416489) 0.0 Click
531256620..1256634 attR    AGCCTAGAATCCTTG 0.0 Click
541256702..1256791 tRNA 0.0 Click
551256881..1257096 hypothetical protein; HMPREF0345_1298 0.0 Click
561257387..1258451 conserved hypothetical protein; HMPREF0345_1299 0.0 Click
571258579..1258755 hypothetical protein; HMPREF0345_1300 0.0 Click
581259171..1259551 PHAGE_Entero_phiEf11: putative phage autolysin regulator; HMPREF0345_1301; phage(gi282598769) 6e-39 Click

Region 4, total : 24 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11807463..1807474 attL    TTCTTTTTGATT 0.0 Click
2complement(1812012..1813181) PHAGE_Clostr_phiC2: putative integrase; HMPREF0345_1830; phage(gi134287379) 1e-32 Click
3complement(1813235..1813564) PHAGE_Lactob_Lj928: hypothetical protein Ljo_1464; HMPREF0345_1831; phage(gi41179289) 2e-19 Click
4complement(1813579..1814442) PHAGE_Entero_phiEf11: LysM domain protein; HMPREF0345_1832; phage(gi282598770) 3e-06 Click
5complement(1814461..1815108) PHAGE_Entero_phiFL4A: hypothetical protein; HMPREF0345_1833; phage(gi281416437) 1e-10 Click
6complement(1815113..1815457) PHAGE_Strept_6: putative repressor; HMPREF0345_1834; phage(gi28876485) 5e-18 Click
71815748..1815939 PHAGE_Strept_MM1: hypothetical protein MM1p05; HMPREF0345_1835; phage(gi15088748) 5e-06 Click
81815945..1816262 conserved hypothetical protein; HMPREF0345_1836 0.0 Click
91816285..1817007 PHAGE_Entero_phiFL3A: anti-repressor protein; HMPREF0345_1837; phage(gi281416221) 1e-46 Click
10complement(1817033..1817221) conserved hypothetical protein; HMPREF0345_1838 0.0 Click
111817276..1817485 PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF0345_1839; phage(gi281416225) 1e-20 Click
121817522..1817860 PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF0345_1840; phage(gi281416230) 6e-10 Click
131817958..1818164 hypothetical protein; HMPREF0345_1841 0.0 Click
14complement(1818145..1818699) hypothetical protein; HMPREF0345_1842 0.0 Click
151818919..1819236 conserved hypothetical protein; HMPREF0345_1843 0.0 Click
161819229..1819963 PHAGE_Staphy_vB_SepiS_phiIPLA5: recombination protein; HMPREF0345_1844; phage(gi399528935) 2e-22 Click
171819968..1820609 PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF0345_1845; phage(gi282598737) 1e-26 Click
181820614..1820814 conserved hypothetical protein; HMPREF0345_1846 0.0 Click
191820814..1821671 PHAGE_Lactob_c5: putative DNA replication protein; HMPREF0345_1847; phage(gi418488187) 2e-32 Click
201821675..1821977 PHAGE_Entero_phiFL3A: hypothetical protein; HMPREF0345_1848; phage(gi281416234) 7e-50 Click
211821978..1822277 PHAGE_Entero_phiFL3A: ArpR DNA binding protein; HMPREF0345_1849; phage(gi281416235) 1e-45 Click
221822295..1822720 PHAGE_Entero_phiFL3A: resolvase; HMPREF0345_1850; phage(gi281416236) 4e-61 Click
231822720..1822869 hypothetical protein; HMPREF0345_1851 0.0 Click
241823000..1823260 conserved hypothetical protein; HMPREF0345_1852 0.0 Click
251823628..1824044 PHAGE_Entero_phiFL3A: transcriptional regulator; HMPREF0345_1853; phage(gi281416247) 1e-60 Click
261824709..1824720 attR    TTCTTTTTGATT 0.0 Click

Region 5, total : 27 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11827288..1828091 PHAGE_Entero_phiFL1A: terminase small subunit; HMPREF0345_1857; phage(gi281416361) 2e-113 Click
21828063..1829352 PHAGE_Brocho_NF5: gp2; HMPREF0345_1858; phage(gi327197586) 0.0 Click
31829364..1830851 PHAGE_Deep_s_D6E: portal protein; HMPREF0345_1859; phage(gi423262330) 8e-42 Click
41830826..1832583 PHAGE_Clostr_CD119: putative head protein; HMPREF0345_1860; phage(gi90592642) 1e-22 Click
51832580..1832801 hypothetical protein; HMPREF0345_1861 0.0 Click
61832842..1833186 conserved hypothetical protein; HMPREF0345_1862 0.0 Click
71833383..1834027 PHAGE_Strept_5: hypothetical protein SpyM3_1323; HMPREF0345_1863; phage(gi28876405) 3e-06 Click
81834041..1834928 PHAGE_Pseudo_UFV_P2: major head protein; HMPREF0345_1864; phage(gi410491826) 2e-09 Click
91834957..1835139 conserved hypothetical protein; HMPREF0345_1865 0.0 Click
101835153..1835497 hypothetical protein; HMPREF0345_1866 0.0 Click
111835494..1835862 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp11; HMPREF0345_1867; phage(gi90592647) 3e-10 Click
121835855..1836253 PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; HMPREF0345_1868; phage(gi134287346) 6e-06 Click
131836256..1836630 conserved hypothetical protein; HMPREF0345_1869 0.0 Click
141836631..1837479 PHAGE_Brocho_NF5: gp6.1; HMPREF0345_1870; phage(gi327197590) 6e-16 Click
151837532..1837882 conserved hypothetical protein; HMPREF0345_1871 0.0 Click
161838130..1841027 PHAGE_Brocho_NF5: gp14; HMPREF0345_1872; phage(gi327197599) 1e-96 Click
171841017..1841751 PHAGE_Lactob_1: tail protein; HMPREF0345_1873; phage(gi219563208) 3e-16 Click
181841733..1844041 PHAGE_Brocho_NF5: gp16; HMPREF0345_1874; phage(gi327197601) 4e-67 Click
191844156..1845037 PHAGE_Lactoc_bIL285: Orf55; HMPREF0345_1875; phage(gi13095735) 4e-18 Click
201845030..1845626 PHAGE_Ralsto_RSL1: unnamed protein product; HMPREF0345_1876; phage(gi189426961) 9e-11 Click
211845623..1845910 PHAGE_Weisse_phiYS61: putative tail fiber protein; HMPREF0345_1877; phage(gi399528395) 4e-09 Click
221845910..1846071 conserved hypothetical protein; HMPREF0345_1878 0.0 Click
231846079..1846369 conserved hypothetical protein; HMPREF0345_1879 0.0 Click
241846369..1846491 conserved bactriophage protein; HMPREF0345_1880 0.0 Click
251846481..1846882 PHAGE_Strept_SMP: putative holin; HMPREF0345_1881; phage(gi119953751) 6e-26 Click
261846895..1848133 PHAGE_Entero_phiFL3A: endolysin; HMPREF0345_1882; phage(gi281416276) 1e-177 Click
271848949..1849170 PHAGE_Lactoc_bIL312: Csp; HMPREF0345_1883; phage(gi13095918) 1e-26 Click

Region 6, total : 19 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(2413736..2414860) PHAGE_Entero_1: amidase; HMPREF0345_2433; phage(gi225626379) 3e-38 Click
2complement(2414979..2415374) PHAGE_Entero_EF62phi: holin; HMPREF0345_2434; phage(gi384519787) 5e-38 Click
3complement(2415398..2417167) PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF0345_2435; phage(gi282598748) 0.0 Click
4complement(2417200..2418657) PHAGE_Entero_phiEf11: putative phage structural protein; HMPREF0345_2436; phage(gi282598760) 8e-172 Click
5complement(2418670..2419596) PHAGE_Entero_phiEf11: putative phage tail protein; HMPREF0345_2437; phage(gi282598752) 2e-146 Click
6complement(2419598..2422531) PHAGE_Strept_Dp_1: TMP; HMPREF0345_2438; phage(gi327198366) 4e-123 Click
7complement(2422532..2422888) PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_45; HMPREF0345_2439; phage(gi13487846) 2e-11 Click
8complement(2422906..2423265) PHAGE_Strept_858: orf17; HMPREF0345_2440; phage(gi168229290) 3e-12 Click
9complement(2423298..2423810) PHAGE_Strept_TP_J34: putative major tail protein; HMPREF0345_2441; phage(gi444475914) 3e-38 Click
10complement(2423823..2424215) PHAGE_Entero_phiEf11: putative major structural protein; HMPREF0345_2442; phage(gi282598740) 2e-07 Click
11complement(2424461..2424868) PHAGE_Lactob_Sha1: phage transcriptional activator RinA; HMPREF0345_2443; phage(gi418489798) 1e-18 Click
12complement(2424888..2425280) conserved hypothetical protein; HMPREF0345_2444 0.0 Click
13complement(2425347..2426189) PHAGE_Entero_EF62phi: D replication protein DC; HMPREF0345_2445; phage(gi384519773) 2e-27 Click
14complement(2426208..2426978) PHAGE_Strept_M102: hypothetical protein M102_gp21; HMPREF0345_2446; phage(gi242345592) 8e-36 Click
15complement(2427009..2427143) conserved hypothetical protein; HMPREF0345_2447 0.0 Click
162427360..2427842 PHAGE_Entero_phiEf11: cI-like repressor; HMPREF0345_2448; phage(gi282598745) 3e-20 Click
172427877..2428362 PHAGE_Entero_phiEf11: conserved hypothetical protein; HMPREF0345_2449; phage(gi282598746) 4e-62 Click
18complement(2428735..2429085) ribosome-binding factor A; HMPREF0345_2450 0.0 Click
19complement(2429110..2431506) PHAGE_Cafete_BV_PW1: putative eIF-2/eIF-5B; HMPREF0345_2451; phage(gi310831102) 2e-23 Click