Staphylococcus epidermidis BCM-HMP0060 , whole genome [asmbl_id: NC_000000].2552994, GC%: 31.93%



Text file for download

            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 26 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1484763..484776 attL    TAACTTAGAAATTA 0.0 Click
2485954..485967 attL    TTAATACTTTTTAA 0.0 Click
3494245..496623 PHAGE_Lactoc_Q54: putative ribonuclease; HMPREF0789_0497; phage(gi115304286) 1e-97 Click
4496648..497118 SsrA-binding protein; HMPREF0789_0498 0.0 Click
5497224..497582 tRNA 0.0 Click
6complement(497693..498253) conserved hypothetical protein; HMPREF0789_0499 0.0 Click
7complement(498266..499381) PHAGE_Bacill_phIS3501: phage integrase; HMPREF0789_0500; phage(gi422934298) 6e-81 Click
8complement(499387..499953) conserved hypothetical protein; HMPREF0789_0501 0.0 Click
9500253..500495 PHAGE_Strept_PH15: cro-like protein; HMPREF0789_0502; phage(gi190151423) 5e-08 Click
10500671..500880 PHAGE_Staphy_PT1028: ORF021; HMPREF0789_0503; phage(gi66395185) 2e-16 Click
11500864..501226 hypothetical protein; HMPREF0789_0504 0.0 Click
12501311..502180 PHAGE_Staphy_PT1028: ORF003; HMPREF0789_0505; phage(gi66395167) 3e-93 Click
13502192..503559 PHAGE_Strept_2: primase; HMPREF0789_0506; phage(gi273809764) 2e-32 Click
14503802..504155 PHAGE_Staphy_PT1028: ORF013; HMPREF0789_0507; phage(gi66395177) 1e-09 Click
15504148..504510 PHAGE_Staphy_PT1028: ORF013; HMPREF0789_0508; phage(gi66395177) 2e-15 Click
16504507..505148 PHAGE_Staphy_PT1028: ORF008; HMPREF0789_0509; phage(gi66395172) 1e-96 Click
17505484..505822 PHAGE_Staphy_PT1028: ORF015; HMPREF0789_0510; phage(gi66395179) 4e-40 Click
18505835..506368 PHAGE_Staphy_PT1028: ORF010; HMPREF0789_0511; phage(gi66395174) 4e-08 Click
19506388..507074 PHAGE_Staphy_PT1028: ORF007; HMPREF0789_0512; phage(gi66395171) 1e-33 Click
20507098..507649 PHAGE_Staphy_PT1028: ORF009; HMPREF0789_0513; phage(gi66395173) 7e-60 Click
21507869..508870 PHAGE_Yoka_poxvirus: truncated A-type inclusion protein; HMPREF0789_0514; phage(gi345107317) 4e-05 Click
22508889..509452 hypothetical protein; HMPREF0789_0515 0.0 Click
23complement(509673..509795) hypothetical protein; HMPREF0789_0516 0.0 Click
24complement(510357..510968) PHAGE_Staphy_42E: ORF022; HMPREF0789_0517; phage(gi66395530) 1e-12 Click
25511239..511559 conserved hypothetical protein; HMPREF0789_0518 0.0 Click
26511790..512575 conserved hypothetical protein; HMPREF0789_0519 0.0 Click
27512750..512763 attR    TTAATACTTTTTAA 0.0 Click
28complement(513025..513255) conserved hypothetical protein; HMPREF0789_0520 0.0 Click
29complement(513268..513498) PHAGE_Bacill_phIS3501: phage integrase; HMPREF0789_0521; phage(gi422934298) 2e-12 Click
30complement(513520..513714) PHAGE_Bacill_phIS3501: phage integrase; HMPREF0789_0522; phage(gi422934298) 9e-08 Click
31516674..516687 attR    TAACTTAGAAATTA 0.0 Click

Region 2, total : 88 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1654462..654475 attL    TTTTTTATTTAGAA 0.0 Click
2complement(659634..660683) PHAGE_Staphy_vB_SepiS_phiIPLA5: integrase; HMPREF0789_0684; phage(gi399528924) 0.0 Click
3complement(660742..661287) PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0685; phage(gi399528925) 2e-101 Click
4complement(661289..661765) PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0686; phage(gi399528926) 2e-85 Click
5661779..661791 attL    TTTTTATATTTCT 0.0 Click
6complement(661853..662020) PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0687; phage(gi399528927) 2e-26 Click
7complement(662145..662867) PHAGE_Staphy_26: phage repressor protein; HMPREF0789_0688; phage(gi304443270) 7e-71 Click
8663009..663248 PHAGE_Staphy_vB_SepiS_phiIPLA5: cro; HMPREF0789_0689; phage(gi399528928) 2e-34 Click
9663262..663423 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0690; phage(gi399528929) 2e-23 Click
10complement(663416..663664) PHAGE_Staphy_29: ORF056; HMPREF0789_0691; phage(gi66396240) 1e-34 Click
11663717..664472 PHAGE_Staphy_vB_SepiS_phiIPLA5: antirepressor; HMPREF0789_0692; phage(gi399528930) 6e-141 Click
12complement(664606..664842) hypothetical protein; HMPREF0789_0693 0.0 Click
13664895..665104 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0694; phage(gi399528932) 1e-34 Click
14665168..665344 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0695; phage(gi399528933) 8e-28 Click
15665399..665674 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0696; phage(gi399528934) 4e-47 Click
16665658..665870 PHAGE_Staphy_PH15: hypothetical protein ph45; HMPREF0789_0697; phage(gi119967877) 2e-34 Click
17665863..666507 PHAGE_Staphy_vB_SepiS_phiIPLA5: recombination protein; HMPREF0789_0698; phage(gi399528935) 6e-120 Click
18666507..666917 PHAGE_Staphy_vB_SepiS_phiIPLA5: single stranded DNA binding protein; HMPREF0789_0699; phage(gi399528936) 3e-74 Click
19666931..667605 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0700; phage(gi399528937) 2e-131 Click
20667602..668303 PHAGE_Staphy_vB_SepiS_phiIPLA5: DNA replication protein; HMPREF0789_0701; phage(gi399528938) 3e-134 Click
21668309..668662 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0702; phage(gi399528939) 2e-65 Click
22668649..669899 PHAGE_Staphy_vB_SepiS_phiIPLA5: DNA helicase; HMPREF0789_0703; phage(gi399528940) 0.0 Click
23669896..670117 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0704; phage(gi399528941) 3e-38 Click
24670095..670340 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0705; phage(gi399528942) 7e-43 Click
25670349..670756 PHAGE_Staphy_vB_SepiS_phiIPLA5: resolvase; HMPREF0789_0706; phage(gi399528943) 5e-76 Click
26670757..670954 PHAGE_Staphy_vB_SepiS_phiIPLA5: transcriptional regulator; HMPREF0789_0707; phage(gi399528944) 1e-32 Click
27670955..671314 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0708; phage(gi399528945) 2e-65 Click
28671311..671766 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0709; phage(gi399528946) 6e-85 Click
29671771..672001 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0710; phage(gi399528947) 2e-36 Click
30672007..672621 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0711; phage(gi399528948) 6e-120 Click
31672608..672805 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0712; phage(gi399528949) 9e-32 Click
32672792..672971 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0713; phage(gi399528950) 2e-27 Click
33672988..673188 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0714; phage(gi399528951) 7e-34 Click
34673214..673603 PHAGE_Staphy_vB_SepiS_phiIPLA5: YopX family protein; HMPREF0789_0715; phage(gi399528952) 2e-72 Click
35673604..673948 PHAGE_Staphy_vB_SepiS_phiIPLA5: nuclease; HMPREF0789_0716; phage(gi399528953) 5e-65 Click
36673953..674105 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0717; phage(gi399528954) 2e-21 Click
37674095..674274 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0718; phage(gi399528955) 9e-29 Click
38674267..674809 PHAGE_Staphy_vB_SepiS_phiIPLA5: dUTPase; HMPREF0789_0719; phage(gi399528956) 1e-98 Click
39674846..675058 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0720; phage(gi399528957) 3e-34 Click
40675055..675234 PHAGE_Staphy_vB_SepiS_phiIPLA5: RinB; HMPREF0789_0721; phage(gi399528958) 6e-31 Click
41675237..675377 PHAGE_Staphy_PH15: hypothetical protein ph66; HMPREF0789_0722; phage(gi119967898) 1e-19 Click
42675378..675599 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0723; phage(gi399528959) 1e-35 Click
43675617..676033 PHAGE_Staphy_vB_SepiS_phiIPLA5: RinA; HMPREF0789_0724; phage(gi399528960) 5e-77 Click
44676483..676863 PHAGE_Staphy_vB_SepiS_phiIPLA7: terminase smal subunit; HMPREF0789_0725; phage(gi399529120) 3e-68 Click
45676850..678112 PHAGE_Staphy_vB_SepiS_phiIPLA5: large terminase subunit; HMPREF0789_0726; phage(gi399528896) 0.0 Click
46678118..679554 PHAGE_Staphy_vB_SepiS_phiIPLA5: portal protein; HMPREF0789_0727; phage(gi399528897) 0.0 Click
47679511..680464 PHAGE_Staphy_vB_SepiS_phiIPLA5: minor capsid protein; HMPREF0789_0728; phage(gi399528898) 1e-178 Click
48680467..680571 PHAGE_Staphy_CNPH82: hypothetical protein cn5; HMPREF0789_0729; phage(gi119953683) 2e-13 Click
49680572..680778 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0730; phage(gi399528899) 2e-27 Click
50680892..681488 PHAGE_Staphy_vB_SepiS_phiIPLA5: scaffolding protein; HMPREF0789_0731; phage(gi399528900) 9e-105 Click
51681506..682336 PHAGE_Staphy_vB_SepiS_phiIPLA5: major head protein; HMPREF0789_0732; phage(gi399528901) 9e-152 Click
52682353..682643 PHAGE_Staphy_vB_SepiS_phiIPLA5: rho termination factor; HMPREF0789_0733; phage(gi399528902) 3e-47 Click
53682643..682957 PHAGE_Staphy_vB_SepiS_phiIPLA5: DNA packaging protein; HMPREF0789_0734; phage(gi399528903) 7e-56 Click
54682950..683279 PHAGE_Staphy_vB_SepiS_phiIPLA5: head tail adaptor; HMPREF0789_0735; phage(gi399528904) 7e-58 Click
55683272..683538 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0736; phage(gi399528905) 4e-39 Click
56683604..684296 PHAGE_Staphy_ROSA: ORF019; HMPREF0789_0737; phage(gi66395983) 5e-58 Click
57684667..685104 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0738; phage(gi399528906) 8e-75 Click
58685091..685630 PHAGE_Staphy_vB_SepiS_phiIPLA5: major tail protein; HMPREF0789_0739; phage(gi399528907) 2e-100 Click
59685691..686185 PHAGE_Staphy_vB_SepiS_phiIPLA5: tail protein; HMPREF0789_0740; phage(gi399528908) 1e-88 Click
60686248..686550 PHAGE_Staphy_vB_SepiS_phiIPLA5: tail protein; HMPREF0789_0741; phage(gi399528909) 2e-47 Click
61686553..689657 PHAGE_Staphy_vB_SepiS_phiIPLA5: tail tape measure protein; HMPREF0789_0742; phage(gi399528910) 0.0 Click
62689673..690611 PHAGE_Staphy_vB_SepiS_phiIPLA5: tail protein; HMPREF0789_0743; phage(gi399528911) 4e-180 Click
63690625..692481 PHAGE_Staphy_vB_SepiS_phiIPLA5: virion associated hydrolase; HMPREF0789_0744; phage(gi399528912) 0.0 Click
64692496..695162 PHAGE_Staphy_vB_SepiS_phiIPLA5: pre neck appendage protein; HMPREF0789_0745; phage(gi399528913) 0.0 Click
65695162..696694 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0746; phage(gi399528914) 0.0 Click
66696678..697037 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0747; phage(gi399528915) 3e-60 Click
67697039..697179 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0748; phage(gi399528916) 1e-21 Click
68697183..697515 PHAGE_Staphy_vB_SepiS_phiIPLA7: hypothetical protein; HMPREF0789_0749; phage(gi399529140) 2e-57 Click
69697986..699809 PHAGE_Staphy_vB_SepiS_phiIPLA5: peptidoglycan hydrolase; HMPREF0789_0750; phage(gi399528919) 0.0 Click
70699862..700845 PHAGE_Staphy_vB_SepiS_phiIPLA5: tail fiber protein; HMPREF0789_0751; phage(gi399528920) 1e-163 Click
71700857..701210 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0752; phage(gi399528921) 4e-67 Click
72701203..701349 PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0753; phage(gi399528916) 4e-05 Click
73701411..701698 PHAGE_Staphy_vB_SepiS_phiIPLA5: holin; HMPREF0789_0754; phage(gi399528922) 6e-50 Click
74701711..703435 PHAGE_Staphy_vB_SepiS_phiIPLA5: amidase; HMPREF0789_0755; phage(gi399528923) 0.0 Click
75complement(703868..704212) PHAGE_Staphy_IPLA88: integrase; HMPREF0789_0756; phage(gi215401172) 6e-49 Click
76complement(704336..704932) PHAGE_Staphy_IPLA88: integrase; HMPREF0789_0757; phage(gi215401172) 3e-92 Click
77complement(704988..705323) PHAGE_Staphy_phiETA: hypothetical protein phiETA_02; HMPREF0789_0758; phage(gi17426230) 1e-35 Click
78complement(705325..705840) hypothetical protein; HMPREF0789_0759 0.0 Click
79complement(705909..706103) conserved hypothetical protein; HMPREF0789_0760 0.0 Click
80complement(706176..706619) PHAGE_Staphy_96: ORF025; HMPREF0789_0761; phage(gi66395910) 9e-16 Click
81complement(706621..707139) PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; HMPREF0789_0762; phage(gi399528926) 2e-12 Click
82complement(707155..707616) PHAGE_Staphy_PH15: conserved phage protein; HMPREF0789_0763; phage(gi119967866) 3e-82 Click
83complement(707628..707957) PHAGE_Staphy_phi7401PVL: phage repressor; HMPREF0789_0764; phage(gi448244648) 3e-26 Click
84708151..708405 PHAGE_Lactob_A2: Cro protein; HMPREF0789_0765; phage(gi22296546) 2e-20 Click
85708402..708566 PHAGE_Staphy_187: ORF100; HMPREF0789_0766; phage(gi66395282) 3e-16 Click
86complement(708555..708761) PHAGE_Staphy_CNPH82: hypothetical protein cn37; HMPREF0789_0767; phage(gi119953715) 3e-35 Click
87708811..709575 PHAGE_Staphy_vB_SepiS_phiIPLA5: antirepressor; HMPREF0789_0768; phage(gi399528930) 1e-69 Click
88709805..709939 PHAGE_Staphy_CNPH82: hypothetical protein cn39; HMPREF0789_0769; phage(gi119953717) 7e-05 Click
89complement(709922..710281) PHAGE_Lactob_Sha1: RNA polymerase III; HMPREF0789_0770; phage(gi418489835) 2e-07 Click
90710611..710865 PHAGE_Staphy_StB27: exonuclease; HMPREF0789_0771; phage(gi431809689) 2e-30 Click
91712411..712423 attR    TTTTTATATTTCT 0.0 Click
92713029..713042 attR    TTTTTTATTTAGAA 0.0 Click

Region 3, total : 11 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1985090..986430 PHAGE_Megavi_lba: putative glutamine synthetase; HMPREF0789_1021; phage(gi448825676) 7e-12 Click
2986602..986614 attL    AAATTTTCTTTAG 0.0 Click
3complement(986624..986806) PHAGE_Temper_1: integrase-like protein; HMPREF0789_1022; phage(gi16271777) 2e-09 Click
4987010..987249 PHAGE_Staphy_StB27: portal protein; HMPREF0789_1023; phage(gi431809707) 6e-25 Click
5987314..988660 PHAGE_Staphy_StB27: minor head protein; HMPREF0789_1024; phage(gi431809708) 9e-101 Click
6988666..988857 conserved hypothetical protein; HMPREF0789_1025 0.0 Click
7989034..989411 PHAGE_Staphy_phiNM: hypothetical protein SAPPV1_gp42; HMPREF0789_1026; phage(gi118430766) 8e-25 Click
8989418..989606 PHAGE_Staphy_StB27: scaffold protein; HMPREF0789_1027; phage(gi431809709) 1e-05 Click
9complement(989857..990540) PHAGE_Lactob_Lj965: putative superinfection immunity protein; HMPREF0789_1028; phage(gi41179219) 3e-23 Click
10complement(990610..991704) threonine aldolase; HMPREF0789_1029 0.0 Click
11991940..992146 conserved hypothetical protein; HMPREF0789_1030 0.0 Click
12992204..993676 PHAGE_Monkey_16: C19L; HMPREF0789_1031; phage(gi17974958) 2e-05 Click
13997623..997635 attR    AAATTTTCTTTAG 0.0 Click