Lactobacillus vaginalis ATCC 49540 , whole genome [asmbl_id: NC_000000].1806246, GC%: 40.62%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 66 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1108214..109737 PHAGE_Acanth_moumouvirus: asparaginyl t-RNA synthetase; HMPREF0549_0095; phage(gi441432571) 4e-09 Click
2109923..110243 conserved hypothetical protein; HMPREF0549_0096 0.0 Click
3110937..111365 PHAGE_Lactob_Nu: hypothetical protein; HMPREF0549_0097; phage(gi78000018) 8e-06 Click
4complement(111456..111575) hypothetical protein; HMPREF0549_0098 0.0 Click
5111907..112452 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp78; HMPREF0549_0099; phage(gi90592714) 7e-07 Click
6112498..112686 hypothetical protein; HMPREF0549_0100 0.0 Click
7112673..112819 conserved hypothetical protein; HMPREF0549_0101 0.0 Click
8112907..112919 attL    CGGTTCGATTCCG 0.0 Click
9112954..113235 conserved hypothetical protein; HMPREF0549_0102 0.0 Click
10113252..113755 PHAGE_Lactoc_bIL309: Orf37; HMPREF0549_0103; phage(gi13095842) 7e-24 Click
11113988..114527 PHAGE_Lactoc_bIL309: Orf38; HMPREF0549_0104; phage(gi13095843) 6e-21 Click
12114502..116442 PHAGE_Lactob_1: terminase large subunit; HMPREF0549_0105; phage(gi219563199) 3e-178 Click
13116452..116616 hypothetical protein; HMPREF0549_0106 0.0 Click
14116619..117812 PHAGE_Lactoc_bIL309: portal protein; HMPREF0549_0107; phage(gi13095846) 4e-64 Click
15117781..119694 PHAGE_Lactoc_bIL309: capsid protein; HMPREF0549_0108; phage(gi13095848) 8e-103 Click
16119714..120034 PHAGE_Lactoc_bIL309: Orf44; HMPREF0549_0109; phage(gi13095849) 2e-05 Click
17120018..120380 PHAGE_Strept_Abc2: capsid-tail joining protein; HMPREF0549_0110; phage(gi281416393) 4e-17 Click
18120373..120786 PHAGE_Lactob_phiAT3: putative head-tail joining protein; HMPREF0549_0111; phage(gi48697267) 7e-19 Click
19120803..121192 PHAGE_Strept_DT1: putative tail component protein; HMPREF0549_0112; phage(gi9632428) 3e-14 Click
20121196..121903 PHAGE_Lactoc_bIL309: Orf48; HMPREF0549_0113; phage(gi13095853) 6e-23 Click
21121991..122401 hypothetical protein; HMPREF0549_0114 0.0 Click
22122461..122631 hypothetical protein; HMPREF0549_0115 0.0 Click
23122632..126438 PHAGE_Lactob_phiAT3: putative minor tail protein; HMPREF0549_0116; phage(gi48697271) 0.0 Click
24126445..127290 PHAGE_Staphy_2: phage tail tape measure protein like; HMPREF0549_0117; phage(gi156604006) 6e-14 Click
25127290..129131 PHAGE_Staphy_SMSAP5: prophage endopeptidase tail family protein; HMPREF0549_0118; phage(gi422935801) 2e-11 Click
26129121..129372 conserved hypothetical protein; HMPREF0549_0119 0.0 Click
27129373..129534 hypothetical protein; HMPREF0549_0120 0.0 Click
28129556..130956 PHAGE_Entero_phiFL2A: hypothetical protein; HMPREF0549_0121; phage(gi281416548) 6e-10 Click
29130960..131469 PHAGE_Staphy_GH15: putative major tail protein; HMPREF0549_0122; phage(gi418488061) 6e-15 Click
30131476..131934 hypothetical protein; HMPREF0549_0123 0.0 Click
31131941..132366 conserved hypothetical protein; HMPREF0549_0124 0.0 Click
32132384..132758 hypothetical protein; HMPREF0549_0125 0.0 Click
33132761..132901 hypothetical protein; HMPREF0549_0126 0.0 Click
34133012..133335 PHAGE_Lactob_LF1: hypothetical protein; HMPREF0549_0127; phage(gi418489406) 3e-05 Click
35133316..133759 hypothetical extracellular protein; HMPREF0549_0128 0.0 Click
36133762..134874 PHAGE_Lactob_c5: putative endolysin; HMPREF0549_0129; phage(gi418488198) 5e-42 Click
37complement(135206..136300) PHAGE_Lactoc_bIL309: integrase; HMPREF0549_0130; phage(gi13095806) 2e-58 Click
38complement(136485..136841) hypothetical protein; HMPREF0549_0131 0.0 Click
39complement(136965..137438) hypothetical extracellular protein; HMPREF0549_0132 0.0 Click
40complement(137455..137769) conserved hypothetical protein; HMPREF0549_0133 0.0 Click
41complement(137832..138263) PHAGE_Lister_B054: gp40; HMPREF0549_0134; phage(gi157325324) 6e-11 Click
42complement(138278..138700) PHAGE_Bacill_BCJA1c: repressor; HMPREF0549_0135; phage(gi56694874) 2e-26 Click
43139024..139227 PHAGE_Lactob_phiadh: hypothetical protein phiadhp12; HMPREF0549_0136; phage(gi9633012) 1e-10 Click
44complement(139359..139583) hypothetical protein; HMPREF0549_0137 0.0 Click
45139645..139977 PHAGE_Lactob_LF1: hypothetical protein; HMPREF0549_0138; phage(gi418489424) 3e-10 Click
46complement(140227..140682) hypothetical protein; HMPREF0549_0139 0.0 Click
47140748..140939 hypothetical protein; HMPREF0549_0140 0.0 Click
48140965..141168 conserved hypothetical protein; HMPREF0549_0141 0.0 Click
49141158..141325 hypothetical protein; HMPREF0549_0142 0.0 Click
50141309..141587 hypothetical protein; HMPREF0549_0143 0.0 Click
51141587..142267 PHAGE_Strept_Sfi21: nucleoside triphosphate binding motifs; HMPREF0549_0144; phage(gi9632970) 8e-74 Click
52142260..143615 PHAGE_Lactob_A2: putative helicase; HMPREF0549_0145; phage(gi22296555) 6e-155 Click
53143612..144190 hypothetical protein; HMPREF0549_0146 0.0 Click
54144209..144739 PHAGE_Lactob_A2: putative single stranded binding protein; HMPREF0549_0147; phage(gi22296556) 7e-46 Click
55144723..147134 PHAGE_Lactob_phiadh: putative DNA-polymerase or DNA-primase; HMPREF0549_0148; phage(gi9633023) 0.0 Click
56147409..147837 hypothetical protein; HMPREF0549_0149 0.0 Click
57147841..148035 hypothetical protein; HMPREF0549_0150 0.0 Click
58148035..148205 hypothetical protein; HMPREF0549_0151 0.0 Click
59148195..148362 hypothetical protein; HMPREF0549_0152 0.0 Click
60148355..148714 PHAGE_Lactob_AQ113: phage protein-Restriction nuclease superfamily; HMPREF0549_0153; phage(gi446730281) 1e-38 Click
61148711..148947 hypothetical protein; HMPREF0549_0154 0.0 Click
62148947..149096 hypothetical protein; HMPREF0549_0155 0.0 Click
63149100..149255 hypothetical protein; HMPREF0549_0156 0.0 Click
64149248..149466 conserved hypothetical protein; HMPREF0549_0157 0.0 Click
65149454..149642 hypothetical protein; HMPREF0549_0158 0.0 Click
66149633..149971 hypothetical protein; HMPREF0549_0159 0.0 Click
67149958..150422 PHAGE_Lactob_phig1e: putative methyltransferase; HMPREF0549_0160; phage(gi23455790) 9e-46 Click
68154433..154445 attR    CGGTTCGATTCCG 0.0 Click

Region 2, total : 17 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11723978..1724148 PHAGE_Lactob_JCL1032: hypothetical protein; HMPREF0549_1777; phage(gi418489174) 3e-10 Click
21724212..1724733 PHAGE_Lactob_KC5a: putative phage terminase small subunit; HMPREF0549_1778; phage(gi90592609) 2e-35 Click
31724843..1725571 PHAGE_Lactob_AQ113: HNH endonuclease; HMPREF0549_1779; phage(gi446730230) 2e-37 Click
41725531..1726112 PHAGE_Lactob_KC5a: putative phage terminase large subunit B; HMPREF0549_1780; phage(gi90592610) 2e-56 Click
51726218..1726901 PHAGE_Strept_O1205: hypothetical protein O1205p26; HMPREF0549_1781; phage(gi23455873) 7e-49 Click
61726911..1728659 PHAGE_Entero_phiFL2A: portal protein; HMPREF0549_1782; phage(gi281416526) 7e-77 Click
71728646..1729590 PHAGE_Lactob_KC5a: putative phage head protein; HMPREF0549_1783; phage(gi90592612) 7e-08 Click
81729674..1730336 PHAGE_Lactob_1: putative scaffold protein; HMPREF0549_1784; phage(gi62327100) 8e-15 Click
91730350..1731369 PHAGE_Lactob_phig1e: minor capsid protein; HMPREF0549_1785; phage(gi23455804) 3e-81 Click
101731563..1731910 PHAGE_Clostr_phi8074_B1: hypothetical protein; HMPREF0549_1786; phage(gi431810365) 3e-05 Click
111731904..1732242 conserved hypothetical protein; HMPREF0549_1787 0.0 Click
121732229..1732750 conserved hypothetical protein; HMPREF0549_1788 0.0 Click
131732750..1733145 conserved hypothetical protein; HMPREF0549_1789 0.0 Click
141733177..1733866 conserved hypothetical protein; HMPREF0549_1790 0.0 Click
151733951..1734436 conserved hypothetical protein; HMPREF0549_1791 0.0 Click
161734460..1734825 conserved hypothetical protein; HMPREF0549_1792 0.0 Click
171734818..1738855 PHAGE_Lactob_phiAT3: putative minor tail protein; HMPREF0549_1793; phage(gi48697271) 2e-38 Click

Region 3, total : 22 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11739998..1742025 PHAGE_Entero_1: type measure protein; HMPREF0549_1796; phage(gi225626385) 5e-18 Click
21742034..1743422 PHAGE_Lactob_KC5a: lysin; HMPREF0549_1797; phage(gi90592635) 1e-61 Click
31743422..1745020 PHAGE_Aeromo_65: hypothetical protein; HMPREF0549_1798; phage(gi326536553) 3e-06 Click
41745020..1745550 hypothetical protein; HMPREF0549_1799 0.0 Click
51745576..1746556 PHAGE_Lactob_LF1: GDSL family lipase; HMPREF0549_1800; phage(gi418489403) 1e-32 Click
61746602..1747441 PHAGE_Lister_P70: hypothetical protein; HMPREF0549_1801; phage(gi410490646) 4e-09 Click
71747454..1747897 hypothetical protein; HMPREF0549_1802 0.0 Click
81747914..1748480 PHAGE_Brocho_NF5: gp19; HMPREF0549_1803; phage(gi327197604) 3e-07 Click
91748480..1748623 hypothetical protein; HMPREF0549_1804 0.0 Click
101748746..1749165 PHAGE_Strept_3: putative holin protein; HMPREF0549_1805; phage(gi28876267) 2e-20 Click
111749140..1749625 conserved hypothetical protein; HMPREF0549_1806 0.0 Click
121749606..1750700 PHAGE_Lactoc_ul36: putative lysin; HMPREF0549_1807; phage(gi21716129) 2e-55 Click
131750701..1751321 PHAGE_Lactob_JCL1032: structural protein; HMPREF0549_1808; phage(gi418489132) 2e-10 Click
141751321..1751851 PHAGE_Entero_IME08: unnamed protein product; HMPREF0549_1809; phage(gi299779125) 2e-20 Click
151751956..1752606 PHAGE_Lactoc_712: putative tail accessory fiber/neck passage structure; HMPREF0549_1810; phage(gi115315585) 2e-06 Click
161753010..1754101 penicillin-binding protein; HMPREF0549_1811 0.0 Click
171754164..1754487 PHAGE_Entero_BC_611: nucleoside triphosphate pyrophosphohydrolase; HMPREF0549_1812; phage(gi392972820) 1e-16 Click
181754501..1755328 PHAGE_Cafete_BV_PW1: putative apurinic-apyrimidinic endonuclease 1; HMPREF0549_1813; phage(gi310831095) 3e-40 Click
191755411..1756118 PHAGE_Invert_3: hypothetical protein MIV095L; HMPREF0549_1814; phage(gi109287973) 8e-05 Click
20complement(1756202..1757473) PHAGE_Parame_AR158: hypothetical protein AR158_C785L; HMPREF0549_1815; phage(gi157953975) 1e-09 Click
21complement(1757554..1758036) possible cadmium-/zinc-/cobalt-transporting ATPase; HMPREF0549_1816 0.0 Click
221758315..1759271 PHAGE_Parame_AR158: hypothetical protein AR158_C204R; HMPREF0549_1817; phage(gi157953395) 1e-25 Click