Lactobacillus gasseri JV-V03 , whole genome shotgun [asmbl_id: NC_000000].2011295, GC%: 34.61%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 59 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1289498..289516 attL    CCCCTCATCTCCATAAATA 0.0 Click
2complement(289601..290785) PHAGE_Lactob_Lj928: putative integrase; HMPREF0514_10279; phage(gi41179288) 1e-150 Click
3complement(290990..291313) conserved hypothetical protein; HMPREF0514_10280 0.0 Click
4complement(291253..291909) PHAGE_Lactob_Lj928: hypothetical protein Ljo_1459; HMPREF0514_10281; phage(gi41179294) 1e-103 Click
5complement(291954..292358) PHAGE_Lactob_Lj928: hypothetical protein Ljo_1458; HMPREF0514_10282; phage(gi41179295) 7e-75 Click
6complement(292348..292677) PHAGE_Lactob_Lj928: putative cI repressor; HMPREF0514_10283; phage(gi41179296) 4e-17 Click
7292955..293164 conserved hypothetical protein; HMPREF0514_10284 0.0 Click
8293161..293379 PHAGE_Lactob_Lj965: hypothetical protein Ljo_1452b; HMPREF0514_10285; phage(gi41179256) 3e-28 Click
9293376..293525 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1452; HMPREF0514_10286; phage(gi41179301) 3e-15 Click
10293582..294145 PHAGE_Entero_HK140: hypothetical protein; HMPREF0514_10287; phage(gi428781979) 1e-14 Click
11294163..294435 phosphoglycerate mutase; HMPREF0514_10288 0.0 Click
12294436..294561 PHAGE_Strept_858: orf37; HMPREF0514_10289; phage(gi168229310) 1e-06 Click
13294554..295822 PHAGE_Strept_5: putative helicase; HMPREF0514_10290; phage(gi28876425) 5e-93 Click
14296005..296178 primosomal protein N; HMPREF0514_10291 0.0 Click
15296183..296326 conserved hypothetical protein; HMPREF0514_10292 0.0 Click
16296330..297097 PHAGE_Strept_PH15: putative NTP-binding protein; HMPREF0514_10293; phage(gi190151434) 3e-57 Click
17297097..297678 PHAGE_Strept_PH15: hypothetical protein phiPH15_gp20; HMPREF0514_10294; phage(gi190151435) 1e-11 Click
18297692..297997 conserved hypothetical protein; HMPREF0514_10295 0.0 Click
19298007..298816 PHAGE_Strept_PH15: putative replication protein; HMPREF0514_10296; phage(gi190151436) 2e-57 Click
20298809..300122 PHAGE_Lactoc_bIL312: helicase; HMPREF0514_10297; phage(gi13095906) 2e-69 Click
21300378..300566 OPT family protein; HMPREF0514_10298 0.0 Click
22300582..300812 conserved hypothetical protein; HMPREF0514_10299 0.0 Click
23301012..301173 conserved hypothetical protein; HMPREF0514_10300 0.0 Click
24301336..301677 PHAGE_Lactob_AQ113: phage protein-Restriction nuclease superfamily; HMPREF0514_10301; phage(gi446730281) 1e-50 Click
25301692..302147 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1443; HMPREF0514_10302; phage(gi41179310) 2e-54 Click
26302398..302479 tRNA 0.0 Click
27302586..303203 PHAGE_Lactob_KC5a: hypothetical protein; HMPREF0514_10303; phage(gi90592606) 7e-119 Click
28303384..304040 PHAGE_Lactob_Lj928: putative terminase large subunit; HMPREF0514_10304; phage(gi41179312) 3e-121 Click
29304104..304613 PHAGE_Lactob_KC5a: putative phage terminase small subunit; HMPREF0514_10305; phage(gi90592609) 5e-43 Click
30304591..305829 PHAGE_Lactob_Lj771: putative phage terminase large subunit B; HMPREF0514_10306; phage(gi163932181) 1e-122 Click
31305842..307248 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1438; HMPREF0514_10307; phage(gi41179315) 6e-124 Click
32307223..308248 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1437; HMPREF0514_10308; phage(gi41179316) 2e-53 Click
33308312..308998 hypothetical protein; HMPREF0514_10309 0.0 Click
34309076..309300 conserved hypothetical protein; HMPREF0514_10310 0.0 Click
35309372..309965 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1434; HMPREF0514_10311; phage(gi41179319) 4e-10 Click
36309979..310887 PHAGE_Staphy_StB27: major head protein; HMPREF0514_10312; phage(gi431809710) 4e-36 Click
37310902..311243 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1432; HMPREF0514_10313; phage(gi41179321) 4e-36 Click
38311233..311544 conserved hypothetical protein; HMPREF0514_10314 0.0 Click
39311537..311902 PHAGE_Strept_TP_J34: hypothetical protein; HMPREF0514_10315; phage(gi444475912) 4e-13 Click
40311899..312288 PHAGE_Entero_phiEf11: putative major structural protein; HMPREF0514_10316; phage(gi282598740) 4e-09 Click
41312289..312918 PHAGE_Lactoc_ul36: major tail protein; HMPREF0514_10317; phage(gi21716118) 3e-12 Click
42312918..313304 PHAGE_Entero_phiEf11: putative phage protein; HMPREF0514_10318; phage(gi282598743) 1e-15 Click
43313352..313672 PHAGE_Lactoc_ul36: hypothetical protein ul36_49; HMPREF0514_10319; phage(gi21716120) 8e-07 Click
44313665..317078 PHAGE_Lactob_1: putative tape measure protein; HMPREF0514_10320; phage(gi62327110) 5e-159 Click
45317066..317881 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1425c; HMPREF0514_10321; phage(gi41179329) 1e-133 Click
46317881..320283 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1425; HMPREF0514_10322; phage(gi41179330) 0.0 Click
47320276..320650 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1424; HMPREF0514_10323; phage(gi41179331) 5e-41 Click
48320650..323166 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1423; HMPREF0514_10324; phage(gi41179332) 5e-72 Click
49323186..323614 conserved hypothetical protein; HMPREF0514_10325 0.0 Click
50323672..324070 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1422; HMPREF0514_10326; phage(gi41179333) 2e-57 Click
51324070..324327 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1421; HMPREF0514_10327; phage(gi41179334) 2e-07 Click
52324320..324514 PHAGE_Lactob_Lj928: hypothetical protein Ljo_1420; HMPREF0514_10328; phage(gi41179335) 4e-22 Click
53324514..324912 PHAGE_Lactob_Lj928: putative holin; HMPREF0514_10329; phage(gi41179336) 3e-63 Click
54324925..325872 PHAGE_Lactob_Lj928: putative lysin; HMPREF0514_10330; phage(gi41179337) 2e-106 Click
55326426..326444 attR    CCCCTCATCTCCATAAATA 0.0 Click
56326643..327116 PHAGE_Equid__4: envelope glycoprotein J; HMPREF0514_10331; phage(gi9629801) 2e-10 Click
57327206..329029 PHAGE_Parame_AR158: hypothetical protein AR158_C024L; HMPREF0514_10332; phage(gi157953215) 4e-12 Click
58329260..329505 aminotransferase; HMPREF0514_10333 0.0 Click
59329562..330527 mannose-6-phosphate isomerase; HMPREF0514_10334 0.0 Click
60330534..330944 integral membrane protein; HMPREF0514_10335 0.0 Click
61330944..331654 PHAGE_Feldma_virus: putative sensor histidine kinase; HMPREF0514_10336; phage(gi197322366) 1e-06 Click
62331658..333109 PHAGE_Ectoca_1: EsV-1-65; HMPREF0514_10337; phage(gi13242537) 2e-21 Click

Region 2, total : 8 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1513031..513045 attL    TATTTTTATCCAAAA 0.0 Click
2520713..522161 PHAGE_Vibrio_ICP1: putative Gp5 baseplate hub subunit and tail lysozyme; HMPREF0514_10528; phage(gi325171175) 7e-08 Click
3522163..523002 ribosome biogenesis GTP-binding protein YlqF; HMPREF0514_10529 0.0 Click
4522999..523751 PHAGE_Cafete_BV_PW1: putative ribonuclease HII; HMPREF0514_10530; phage(gi310831397) 6e-28 Click
5523803..524648 DNA protecting protein DprA; HMPREF0514_10531 0.0 Click
6524714..526795 PHAGE_Acanth_mimivirus: DNA topoisomerase 1; HMPREF0514_10532; phage(gi311977597) 6e-104 Click
7526893..528209 tRNA:M(5)U-54 methyltransferase; HMPREF0514_10533 0.0 Click
8528212..529135 PHAGE_Staphy_PT1028: ORF002; HMPREF0514_10534; phage(gi66395166) 1e-13 Click
9529140..529664 PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; HMPREF0514_10535; phage(gi15834113) 1e-40 Click
10529675..531069 PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; HMPREF0514_10536; phage(gi15834112) 7e-117 Click
11544872..544886 attR    TATTTTTATCCAAAA 0.0 Click

Region 3, total : 58 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(925228..927066) PHAGE_Parame_1: Glutamine:fructose-6-phosphate amidotransferase; HMPREF0514_10927; phage(gi340025710) 2e-96 Click
2927102..927275 conserved hypothetical protein; HMPREF0514_10928 0.0 Click
3complement(927835..928767) PHAGE_Lactob_phiadh: lysin; HMPREF0514_10929; phage(gi9633062) 1e-127 Click
4complement(928777..929208) PHAGE_Lactob_Lj771: putative holin; HMPREF0514_10930; phage(gi163932151) 5e-47 Click
5complement(929205..929483) PHAGE_Lactob_Lj771: hypothetical protein LJ771_052; HMPREF0514_10931; phage(gi163932200) 7e-47 Click
6complement(929494..929997) PHAGE_Lactob_Lj771: hypothetical protein LJ771_051; HMPREF0514_10932; phage(gi163932150) 1e-74 Click
7complement(930064..930582) PHAGE_Lactob_Lj771: hypothetical protein LJ771_050; HMPREF0514_10933; phage(gi163932149) 5e-82 Click
8complement(930622..932790) PHAGE_Lactob_Lj771: hypothetical protein LJ771_049; HMPREF0514_10934; phage(gi163932148) 0.0 Click
9931909..931920 attL    TAAAGTTGGTAA 0.0 Click
10complement(932803..933363) PHAGE_Lactob_Lj771: hypothetical protein LJ771_048; HMPREF0514_10935; phage(gi163932147) 2e-95 Click
11complement(933353..934504) PHAGE_Lactob_Lj771: element PBSX protein; HMPREF0514_10936; phage(gi163932146) 0.0 Click
12complement(934501..934881) PHAGE_Lactob_Lj771: hypothetical protein LJ771_046; HMPREF0514_10937; phage(gi163932199) 7e-64 Click
13complement(934874..935236) PHAGE_Lactob_Lj771: hypothetical protein LJ771_045; HMPREF0514_10938; phage(gi163932198) 6e-62 Click
14complement(935215..936261) PHAGE_Lactob_Lj771: hypothetical protein LJ771_044; HMPREF0514_10939; phage(gi163932197) 0.0 Click
15complement(936258..936947) PHAGE_Lactob_Lj771: hypothetical protein LJ771_043; HMPREF0514_10940; phage(gi163932196) 2e-129 Click
16complement(936940..940353) PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; HMPREF0514_10941; phage(gi163932195) 0.0 Click
17complement(940590..941009) PHAGE_Lactob_Lj771: hypothetical protein LJ771_041; HMPREF0514_10942; phage(gi163932194) 2e-73 Click
18complement(941021..941491) PHAGE_Lactob_Lj771: sheath tail protein; HMPREF0514_10943; phage(gi163932193) 4e-87 Click
19complement(941503..942858) PHAGE_Lactob_Lj771: hypothetical protein LJ771_039; HMPREF0514_10944; phage(gi163932192) 0.0 Click
20complement(942858..943076) PHAGE_Lactob_Lj771: hypothetical protein LJ771_038; HMPREF0514_10945; phage(gi163932191) 2e-29 Click
21complement(943060..943467) PHAGE_Lactob_Lj771: hypothetical protein LJ771_037; HMPREF0514_10946; phage(gi163932190) 7e-69 Click
22complement(943464..943898) PHAGE_Lactob_Lj771: hypothetical protein LJ771_036; HMPREF0514_10947; phage(gi163932189) 7e-76 Click
23complement(943895..944257) PHAGE_Lactob_Lj771: hypothetical protein LJ771_035; HMPREF0514_10948; phage(gi163932188) 9e-61 Click
24complement(944254..944643) PHAGE_Lactob_Lj771: hypothetical protein LJ771_034; HMPREF0514_10949; phage(gi163932187) 2e-67 Click
25complement(944652..945707) PHAGE_Lactob_Lj771: major head protein; HMPREF0514_10950; phage(gi163932186) 5e-109 Click
26complement(945712..946266) PHAGE_Lactob_Lj771: scaffolding protein SbcC-like protein; HMPREF0514_10951; phage(gi163932185) 2e-78 Click
27complement(946440..946646) conserved hypothetical protein; HMPREF0514_10952 0.0 Click
28complement(946646..948250) PHAGE_Lactob_Lj771: minor head protein; HMPREF0514_10953; phage(gi163932184) 0.0 Click
29complement(948240..949652) PHAGE_Lactob_Lj771: portal protein; HMPREF0514_10954; phage(gi169794179) 0.0 Click
30complement(949643..950872) PHAGE_Lactob_Lj771: putative phage terminase large subunit B; HMPREF0514_10955; phage(gi163932181) 0.0 Click
31complement(950835..951344) PHAGE_Lactob_Lj771: small terminase subunit; HMPREF0514_10956; phage(gi163932180) 2e-84 Click
32complement(951393..951836) conserved hypothetical protein; HMPREF0514_10957 0.0 Click
33complement(951811..952281) PHAGE_Lactoc_bIL311: Orf21; HMPREF0514_10958; phage(gi13095679) 8e-29 Click
34complement(952502..952575) tRNA 0.0 Click
35complement(953071..953247) hypothetical protein; HMPREF0514_10959 0.0 Click
36complement(953580..954122) PHAGE_Lactob_Lj771: hypothetical protein LJ771_025; HMPREF0514_10960; phage(gi163932177) 7e-10 Click
37complement(954139..954348) PHAGE_Lactob_Lj771: hypothetical protein LJ771_024; HMPREF0514_10961; phage(gi163932176) 4e-27 Click
38complement(954351..954638) PHAGE_Lactob_Lj771: hypothetical protein LJ771_023; HMPREF0514_10962; phage(gi163932175) 3e-42 Click
39complement(954628..954759) conserved hypothetical protein; HMPREF0514_10963 0.0 Click
40complement(954829..955056) conserved hypothetical protein; HMPREF0514_10964 0.0 Click
41complement(955059..955520) PHAGE_Lactob_Lj771: holliday junction resolvase; HMPREF0514_10965; phage(gi163932172) 1e-81 Click
42complement(955517..955765) conserved hypothetical protein; HMPREF0514_10966 0.0 Click
43complement(955762..956010) PHAGE_Lactob_Lj771: hypothetical protein LJ771_015; HMPREF0514_10967; phage(gi163932167) 2e-15 Click
44complement(956013..956282) PHAGE_Lactob_phiadh: hypothetical protein phiadhp26; HMPREF0514_10968; phage(gi9633026) 2e-06 Click
45complement(956507..956788) PHAGE_Lactob_KC5a: putative transcriptional regulator; HMPREF0514_10969; phage(gi90592588) 8e-30 Click
46complement(956794..957714) PHAGE_Lactob_Lj771: DNA replication protein; HMPREF0514_10970; phage(gi163932162) 3e-150 Click
47complement(957724..958545) PHAGE_Lactob_Lj771: putative recombination protein; HMPREF0514_10971; phage(gi163932161) 1e-145 Click
48complement(958551..959411) PHAGE_Lactob_Lj771: hypothetical protein LJ771_008; HMPREF0514_10972; phage(gi163932160) 2e-151 Click
49complement(959411..959740) PHAGE_Lactob_Lj771: hypothetical protein LJ771_007; HMPREF0514_10973; phage(gi163932159) 1e-58 Click
50complement(959787..959999) PHAGE_Lactob_KC5a: putative recombination protein; HMPREF0514_10974; phage(gi90592583) 3e-18 Click
51complement(960074..960283) Trp operon repressor; HMPREF0514_10975 0.0 Click
52complement(960277..960579) PHAGE_Lactob_KC5a: hypothetical protein; HMPREF0514_10976; phage(gi90592582) 7e-18 Click
53complement(960582..960911) PHAGE_Lactob_KC5a: hypothetical protein; HMPREF0514_10977; phage(gi90592581) 2e-52 Click
54complement(960998..961213) transcriptional regulator; HMPREF0514_10978 0.0 Click
55961361..961708 PHAGE_Lactob_Lj771: cl repressor; HMPREF0514_10979; phage(gi163932156) 2e-28 Click
56961708..962166 PHAGE_Lactob_Lj771: conserved hypothetical protein; HMPREF0514_10980; phage(gi163932155) 3e-77 Click
57962175..962912 PHAGE_Strept_SMP: hypothetical protein; HMPREF0514_10981; phage(gi119953754) 6e-22 Click
58962958..963488 conserved hypothetical protein; HMPREF0514_10982 0.0 Click
59963317..963328 attR    TAAAGTTGGTAA 0.0 Click
60963560..963697 conserved hypothetical protein; HMPREF0514_10983 0.0 Click
61963699..964802 PHAGE_Lactob_KC5a: integrase; HMPREF0514_10984; phage(gi90592576) 5e-111 Click

Region 4, total : 21 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11740595..1740607 attL    TAAGAAAAAAGAT 0.0 Click
21753825..1754436 PHAGE_Clostr_phiCD6356: putative site-specific recombinase; HMPREF0514_11740; phage(gi326536904) 5e-20 Click
31754544..1755134 possible transcriptional regulator; HMPREF0514_11741 0.0 Click
41755131..1756009 conserved hypothetical protein; HMPREF0514_11742 0.0 Click
5complement(1756218..1756502) conserved hypothetical protein; HMPREF0514_11743 0.0 Click
61757375..1757869 conserved hypothetical protein; HMPREF0514_11744 0.0 Click
7complement(1758647..1759906) major facilitator superfamily transporter permease; HMPREF0514_11745 0.0 Click
81760002..1760850 XRE family transcriptional regulator; HMPREF0514_11746 0.0 Click
9complement(1761039..1761371) PHAGE_Lactob_AQ113: single-strand DNA binding protein; HMPREF0514_11747; phage(gi446730277) 1e-08 Click
10complement(1761638..1761859) conserved hypothetical protein; HMPREF0514_11748 0.0 Click
11complement(1761880..1762098) conserved hypothetical protein; HMPREF0514_11749 0.0 Click
12complement(1762387..1763958) PHAGE_Bacill_SPBc2: ABC transporter; HMPREF0514_11750; phage(gi9630145) 1e-17 Click
13complement(1763965..1765551) PHAGE_Bacill_SPBc2: ABC transporter; HMPREF0514_11751; phage(gi9630145) 9e-20 Click
14complement(1765562..1765870) conserved hypothetical protein; HMPREF0514_11752 0.0 Click
15complement(1766112..1766432) RelE/ParE family plasmid stabilization system protein; HMPREF0514_11753 0.0 Click
16complement(1766432..1766665) prevent-host-death family antitoxin; HMPREF0514_11754 0.0 Click
171766839..1767645 PHAGE_Entero_EF62phi: chromosome partitioning ATPase; HMPREF0514_11755; phage(gi384519759) 2e-58 Click
181767638..1767940 PHAGE_Entero_EF62phi: hypothetical protein; HMPREF0514_11756; phage(gi384519758) 4e-05 Click
19complement(1768054..1768425) probable replication associated protein; HMPREF0514_11757 0.0 Click
20complement(1768418..1768678) RelB/DinJ family addiction module antitoxin; HMPREF0514_11758 0.0 Click
21complement(1768925..1769095) conserved hypothetical protein; HMPREF0514_11759 0.0 Click
22complement(1769680..1770843) PROPHAGE_Escher_CFT073: transposase; HMPREF0514_11760; phage(gi26246249) 1e-49 Click
231776360..1776372 attR    TAAGAAAAAAGAT 0.0 Click