Clostridium difficile QCD-23m63 , whole genome shotgun [asmbl_id: NC_000000].3936085, GC%: 28.56%



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            Hits against Virus and prophage DB
             Hits against Bacterial DB or GenBank file

Region 1, total : 18 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1222609..223307 PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PP_00215; phage(gi326784002) 1e-48 Click
2223319..224686 PHAGE_Parame_FR483: hypothetical protein FR483_N035R; PP_00216; phage(gi155370133) 3e-22 Click
3224680..225756 PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; PP_00217; phage(gi472340860) 8e-64 Click
4225750..226343 PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; PP_00218; phage(gi134288807) 1e-06 Click
5226336..227868 PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; PP_00219; phage(gi61806062) 3e-61 Click
6227879..229129 phosphoribosylamine--glycine ligase [Clostridium difficile R20291] gi|260685596|ref|YP_003216729.1|; PP_00220 0.0 Click
7229154..232960 PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; PP_00221; phage(gi149882852) 1e-33 Click
8233164..234036 PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; PP_00222; phage(gi448260370) 4e-35 Click
9234145..235014 PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; PP_00223; phage(gi448260372) 9e-97 Click
10235063..235620 PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; PP_00224; phage(gi448260371) 4e-46 Click
11235658..236641 PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; PP_00225; phage(gi448260373) 6e-72 Click
12236679..237347 PHAGE_Pseudo_PB1: putative tail protein containing transglycosylase; PP_00226; phage(gi219523908) 1e-16 Click
13237356..237784 hypothetical protein CDR20291_0228 [Clostridium difficile R20291] gi|260685603|ref|YP_003216736.1|; PP_00227 1e-71 Click
14237808..238122 flagellar motor switch protein [Clostridium difficile R20291] gi|260685604|ref|YP_003216737.1|; PP_00228 1e-49 Click
15238274..238549 negative regulator of flagellin synthesis (anti-sigma-d factor) [Clostridium difficile R20291] gi|260685605|ref|YP_003216738.1|; PP_00229 1e-42 Click
16238554..238970 flagellar biosynthesis protein [Clostridium difficile R20291] gi|260685606|ref|YP_003216739.1|; PP_00230 3e-68 Click
17238988..239365 flagellar hook-associated protein [Clostridium difficile R20291] gi|260685607|ref|YP_003216740.1|; PP_00231 6e-64 Click
18239352..240299 PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_00232; phage(gi9631364) 1e-07 Click

Region 2, total : 30 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
11363813..1364013 PHAGE_Lactoc_bIL312: Csp; PP_01297; phage(gi13095918) 6e-17 Click
21364434..1364862 regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01298 4e-77 Click
3complement(1365005..1365760) peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01299 6e-137 Click
4complement(1365881..1366015) hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_01300 2e-16 Click
5complement(1366461..1366967) PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01301; phage(gi209901280) 3e-10 Click
6complement(1367012..1367368) PHAGE_Geobac_GBSV1: immunity repressor protein; PP_01302; phage(gi115334658) 2e-13 Click
71367537..1367734 PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01303; phage(gi17426238) 6e-06 Click
81367838..1368278 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01304; phage(gi90592709) 3e-37 Click
91368527..1368970 PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01305; phage(gi90592649) 4e-24 Click
101368975..1370039 PHAGE_Clostr_phiMMP04: tail sheath; PP_01306; phage(gi414090451) 5e-69 Click
111370053..1370481 PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01307; phage(gi414090452) 8e-08 Click
121370595..1371041 PHAGE_Clostr_CD119: XkdN protein; PP_01308; phage(gi90592652) 2e-15 Click
131371119..1371235 hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01309 1e-14 Click
141371235..1373688 PHAGE_Clostr_phiMMP04: tail tape measure; PP_01310; phage(gi414090455) 1e-22 Click
151373688..1374110 PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01311; phage(gi414090456) 1e-47 Click
161374392..1375921 PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01312; phage(gi414090458) 6e-122 Click
171375937..1376263 PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01313; phage(gi414090459) 1e-54 Click
181376263..1376691 PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01314; phage(gi414090460) 3e-63 Click
191376684..1377736 PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01315; phage(gi414090461) 3e-140 Click
201377733..1378431 PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01316; phage(gi414090462) 4e-52 Click
211378432..1379418 PHAGE_Clostr_phiMMP04: tail fiber; PP_01317; phage(gi414090463) 1e-48 Click
221379440..1384617 PHAGE_Bathyc_BpV1: hypothetical protein; PP_01318; phage(gi313768166) 3e-17 Click
231384634..1384987 hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01319 5e-13 Click
241385249..1385509 PHAGE_Clostr_phiCD38_2: putative holin; PP_01320; phage(gi333798129) 4e-37 Click
25complement(1385719..1386174) hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01321 1e-78 Click
26complement(1386402..1386821) PHAGE_Strept_3: putative cI-like repressor; PP_01322; phage(gi28876313) 8e-08 Click
271387117..1387326 PHAGE_Bacill_BCJA1c: cro; PP_01323; phage(gi56694875) 4e-08 Click
281387358..1387567 hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01324 8e-32 Click
29complement(1387784..1388182) PHAGE_Lister_A118: putative repressor protein; PP_01325; phage(gi16798819) 3e-09 Click
30complement(1388600..1391092) PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01326; phage(gi9631364) 4e-11 Click

Region 3, total : 15 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(2354057..2354749) PHAGE_Feldma_virus: putative sensor histidine kinase; PP_02263; phage(gi197322366) 1e-09 Click
2complement(2355335..2355469) PHAGE_Clostr_phiC2: putative transcriptional regulator; PP_02264; phage(gi134287378) 2e-13 Click
32355614..2355847 putative HTH-type transcriptional regulator [Bifidobacterium bifidum BGN4] gi|390936393|ref|YP_006393952.1|; PP_02265 2e-27 Click
42355831..2356244 hypothetical; PP_02266 0.0 Click
52356841..2357158 hypothetical protein CDR20291_1077 [Clostridium difficile R20291] gi|260686442|ref|YP_003217575.1|; PP_02267 2e-48 Click
6complement(2357219..2358826) PHAGE_Bacill_36: low copy number virion structural protein; PP_02268; phage(gi156564190) 7e-14 Click
7complement(2359125..2359382) PHAGE_Clostr_phiMMP02: endolysin; PP_02269; phage(gi414090399) 6e-39 Click
8complement(2359433..2359654) PROPHAGE_Lactoc_Il1403: IS1077F transposase; PP_02270; phage(gi15674057) 3e-05 Click
92360016..2360366 hypothetical protein CDR20291_2194 [Clostridium difficile R20291] gi|260687545|ref|YP_003218679.1|; PP_02271 6e-57 Click
102360368..2360568 PHAGE_Lactoc_phiLC3: phage repressor; PP_02272; phage(gi45597387) 2e-05 Click
112360994..2361170 hypothetical protein CDR20291_1271 [Clostridium difficile R20291] gi|260686636|ref|YP_003217769.1|; PP_02273 4e-25 Click
122361395..2361595 PHAGE_Lactoc_bIL312: Csp; PP_02274; phage(gi13095918) 7e-21 Click
132362206..2363018 ABC transporter substrate-binding protein [Clostridium difficile R20291] gi|260687550|ref|YP_003218684.1|; PP_02275 2e-140 Click
142363346..2363819 ABC transporter permease [Clostridium difficile R20291] gi|260687551|ref|YP_003218685.1|; PP_02276 2e-81 Click
152363821..2364516 PHAGE_Plankt_PaV_LD: ABC transporter; PP_02277; phage(gi371496158) 2e-17 Click

Region 4, total : 19 CDS.
#CDS_POSITIONBLAST_HITE-VALUESEQUENCE
1complement(3894967..3896346) PHAGE_Lactoc_lato: putative tail lysin; PP_03665; phage(gi30089904) 5e-05 Click
2complement(3896458..3897087) SpoIIIJ-associated protein [Clostridium difficile R20291] gi|260688878|ref|YP_003220012.1|; PP_03666 3e-98 Click
3complement(3897056..3897763) sporulation membrane protein [Clostridium difficile R20291] gi|260688879|ref|YP_003220013.1|; PP_03667 4e-129 Click
4complement(3897795..3898046) PHAGE_Haemop_HP1: hypothetical protein HP1p03; PP_03668; phage(gi9628603) 5e-08 Click
5complement(3898078..3898422) ribonuclease P [Clostridium difficile R20291] gi|260688881|ref|YP_003220015.1|; PP_03669 4e-57 Click
6complement(3898500..3898637) 50S ribosomal protein L34 [Clostridium difficile R20291] gi|260688882|ref|YP_003220016.1|; PP_03670 1e-18 Click
73899296..3900615 PHAGE_Staphy_SpaA1: predicted DNA replication ATPase related to DnaC; PP_03671; phage(gi399498904) 3e-06 Click
83900857..3901963 PHAGE_Rhizob_3: p081; PP_03672; phage(gi195546611) 2e-28 Click
93902100..3902306 RNA-binding mediating protein [Clostridium difficile CD196] gi|260681772|ref|YP_003213057.1|; PP_03673 3e-29 Click
103902323..3903438 PHAGE_Brocho_NF5: gp34; PP_03674; phage(gi327197619) 3e-08 Click
113903439..3904689 PHAGE_Yersin_phiR1_37: DNA-topoisomerase II B-subunit; PP_03675; phage(gi358356794) 6e-42 Click
123904847..3905341 PHAGE_Lactoc_949: putative DNA gyrase subunit B-topoisomerase; PP_03676; phage(gi327197937) 1e-26 Click
133905361..3907787 PHAGE_Cyanop_S_TIM5: DNA gyrase subunit A; PP_03677; phage(gi422936149) 7e-75 Click
143907856..3908152 hypothetical protein CD196_0007 [Clostridium difficile CD196] gi|260681776|ref|YP_003213061.1|; PP_03678 1e-50 Click
153908152..3908412 hypothetical protein CD196_0008 [Clostridium difficile CD196] gi|260681777|ref|YP_003213062.1|; PP_03679 7e-41 Click
163908424..3908741 anti-sigma-B factor antagonist [Clostridium difficile CD196] gi|260681778|ref|YP_003213063.1|; PP_03680 3e-51 Click
173908745..3909152 anti-sigma-B factor (serine-protein kinase) [Clostridium difficile R20291] gi|260685376|ref|YP_003216509.1|; PP_03681 2e-70 Click
183909152..3909571 PHAGE_Bacill_BCP78: putative RNA polymerase sigma 28 subunit SigG; PP_03682; phage(gi410492878) 1e-09 Click
193909609..3909926 PHAGE_Bacill_BCP78: putative RNA polymerase sigma 28 subunit SigF; PP_03683; phage(gi410492877) 1e-06 Click